Wall clock time and date at job start Tue Mar 31 2020 14:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.48013 * 2 1 4 4 C 1.53994 * 109.48604 * 239.97662 * 2 1 3 5 5 C 1.45820 * 113.29493 * 158.99965 * 4 2 1 6 6 S 1.82225 * 112.64831 * 65.13180 * 5 4 2 7 7 C 1.79951 * 103.24146 * 286.05513 * 6 5 4 8 8 C 1.54167 * 111.28609 * 83.91455 * 7 6 5 9 9 N 1.44684 * 109.47740 * 120.01902 * 2 1 3 10 10 C 1.34771 * 119.72793 * 38.46568 * 9 2 1 11 11 O 1.21358 * 120.00037 * 8.20956 * 10 9 2 12 12 C 1.49444 * 120.00345 * 188.19835 * 10 9 2 13 13 O 1.21351 * 119.99778 * 6.87287 * 12 10 9 14 14 N 1.34772 * 120.00464 * 187.14449 * 12 10 9 15 15 C 1.46503 * 120.00493 * 184.76021 * 14 12 10 16 16 C 1.53000 * 109.47279 * 184.87938 * 15 14 12 17 17 C 1.50703 * 115.54774 * 305.95124 * 16 15 14 18 18 H 1.07998 * 119.99605 * 146.08740 * 17 16 15 19 19 C 1.37869 * 120.00061 * 326.07808 * 17 16 15 20 20 N 1.31509 * 120.00264 * 3.87622 * 19 17 16 21 21 Si 1.86806 * 119.99869 * 183.87240 * 19 17 16 22 22 H 1.48498 * 109.46898 * 90.00218 * 21 19 17 23 23 H 1.48498 * 109.47072 * 210.00244 * 21 19 17 24 24 H 1.48496 * 109.47004 * 330.00317 * 21 19 17 25 25 C 1.53002 * 117.49772 * 160.28121 * 16 15 14 26 26 C 1.52997 * 117.49969 * 91.62027 * 16 15 14 27 27 H 1.08997 * 109.46751 * 288.50180 * 1 2 3 28 28 H 1.09002 * 109.46861 * 48.49250 * 1 2 3 29 29 H 1.08995 * 109.46895 * 168.49880 * 1 2 3 30 30 H 1.09001 * 108.71986 * 279.99003 * 4 2 1 31 31 H 1.09004 * 108.71807 * 38.01700 * 4 2 1 32 32 H 1.09000 * 108.84948 * 185.94731 * 5 4 2 33 33 H 1.08999 * 108.84799 * 304.31846 * 5 4 2 34 34 H 1.09005 * 109.14012 * 204.41788 * 7 6 5 35 35 H 1.08993 * 109.14695 * 323.61611 * 7 6 5 36 36 H 1.09004 * 108.58946 * 195.79585 * 8 7 6 37 37 H 1.08999 * 108.40242 * 78.51865 * 8 7 6 38 38 H 0.97001 * 120.00025 * 4.76422 * 14 12 10 39 39 H 1.08997 * 109.46826 * 304.88105 * 15 14 12 40 40 H 1.09004 * 109.46896 * 64.87769 * 15 14 12 41 41 H 0.97006 * 120.00427 * 185.00159 * 20 19 17 42 42 H 1.09001 * 117.49847 * 359.97438 * 25 16 15 43 43 H 1.09000 * 117.49319 * 145.01795 * 25 16 15 44 44 H 1.08997 * 117.50382 * 214.97829 * 26 16 15 45 45 H 1.09003 * 117.50073 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0437 -0.7264 -1.2569 5 6 3.4148 -0.3741 -1.6067 6 16 4.6196 -0.9099 -0.3488 7 6 4.3566 0.2557 0.9967 8 6 3.1875 -0.1860 1.8993 9 7 2.0125 -0.6824 1.1811 10 6 1.3714 -1.7808 1.6270 11 8 0.4888 -2.2807 0.9607 12 6 1.7475 -2.3835 2.9418 13 8 2.5401 -1.8163 3.6646 14 7 1.2105 -3.5596 3.3223 15 6 1.4974 -4.0993 4.6537 16 6 0.8712 -5.4890 4.7866 17 6 -0.6025 -5.5695 4.4817 18 1 -1.0109 -6.4570 4.0212 19 6 -1.4293 -4.5105 4.7909 20 7 -0.9214 -3.4010 5.2812 21 14 -3.2712 -4.6516 4.5131 22 1 -3.9165 -5.1905 5.7372 23 1 -3.8301 -3.3099 4.2087 24 1 -3.5312 -5.5665 3.3728 25 6 1.4177 -6.4085 5.8806 26 6 1.7372 -6.6930 4.4108 27 1 -0.3633 0.3261 0.9745 28 1 -0.3633 0.6811 -0.7696 29 1 -0.3633 -1.0070 -0.2049 30 1 1.9916 -1.8016 -1.0855 31 1 1.3937 -0.4766 -2.0955 32 1 3.6671 -0.8427 -2.5579 33 1 3.4823 0.7078 -1.7205 34 1 5.2652 0.3214 1.5954 35 1 4.1314 1.2375 0.5803 36 1 2.8827 0.6619 2.5128 37 1 3.5435 -0.9744 2.5624 38 1 0.6341 -4.0488 2.7146 39 1 2.5762 -4.1723 4.7914 40 1 1.0783 -3.4379 5.4119 41 1 -1.5084 -2.6834 5.5665 42 1 2.2236 -6.0235 6.5053 43 1 0.7113 -7.0719 6.3795 44 1 1.2411 -7.5436 3.9435 45 1 2.7533 -6.4952 4.0693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330223033.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:00 Heat of formation + Delta-G solvation = -37.072798 kcal Electronic energy + Delta-G solvation = -27149.872033 eV Core-core repulsion = 23487.759573 eV Total energy + Delta-G solvation = -3662.112460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.03098 -39.96215 -38.48900 -37.97225 -35.30788 -34.58248 -34.10611 -32.34986 -30.64264 -28.36029 -27.49020 -25.64695 -24.63695 -24.13334 -22.98477 -22.31030 -21.21222 -20.32274 -18.75155 -18.14092 -17.69004 -17.53464 -17.06765 -16.79392 -16.57480 -16.35295 -15.71661 -15.60050 -15.47441 -15.11254 -14.88289 -14.83116 -14.40038 -14.12231 -13.79258 -13.68992 -13.39071 -13.24062 -13.06828 -12.94191 -12.85019 -12.67898 -12.59896 -12.31785 -12.24472 -12.05218 -11.93237 -11.51089 -11.43169 -10.92827 -10.72088 -10.68968 -10.26948 -10.00758 -9.87827 -9.64950 -8.68569 -7.99267 -6.21472 0.51857 0.76626 1.40211 1.44989 1.47277 1.51783 1.65376 2.27548 2.40236 2.66113 3.03969 3.48815 3.57959 3.67434 3.71662 3.87579 4.08642 4.13209 4.24156 4.27684 4.40681 4.50877 4.51484 4.62655 4.71568 4.75173 4.77307 4.77715 4.83468 4.90237 4.96493 4.99022 5.10745 5.16476 5.24437 5.28284 5.50944 5.58650 5.60469 5.75820 5.93078 6.04189 6.34714 6.51671 6.79911 6.93472 7.20700 7.43096 8.88079 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015743 B = 0.004138 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.170398 B = 6764.567255 C = 7694.804132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 H 0.112 0.888 4 C -0.130 4.130 5 C -0.062 4.062 6 S -0.306 6.306 7 C -0.083 4.083 8 C 0.076 3.924 9 N -0.565 5.565 10 C 0.513 3.487 11 O -0.533 6.533 12 C 0.488 3.512 13 O -0.554 6.554 14 N -0.644 5.644 15 C 0.176 3.824 16 C 0.001 3.999 17 C -0.504 4.504 18 H 0.055 0.945 19 C 0.038 3.962 20 N -0.890 5.890 21 Si 0.945 3.055 22 H -0.276 1.276 23 H -0.292 1.292 24 H -0.270 1.270 25 C -0.190 4.190 26 C -0.191 4.191 27 H 0.036 0.964 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.407 0.593 39 H 0.033 0.967 40 H 0.088 0.912 41 H 0.258 0.742 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.317 10.761 -12.320 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 H 0.130 0.870 4 C -0.170 4.170 5 C -0.210 4.210 6 S -0.079 6.079 7 C -0.232 4.232 8 C -0.048 4.048 9 N -0.297 5.297 10 C 0.296 3.704 11 O -0.410 6.410 12 C 0.269 3.731 13 O -0.437 6.437 14 N -0.290 5.290 15 C 0.053 3.947 16 C 0.001 3.999 17 C -0.541 4.541 18 H 0.074 0.926 19 C -0.163 4.163 20 N -0.528 5.528 21 Si 0.772 3.228 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.195 1.195 25 C -0.229 4.229 26 C -0.228 4.228 27 H 0.056 0.944 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.242 0.758 39 H 0.051 0.949 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.062 10.266 -12.211 18.348 hybrid contribution -2.212 0.476 0.237 2.275 sum 6.850 10.743 -11.974 17.485 Atomic orbital electron populations 1.22242 0.94026 1.04086 1.01900 1.21309 0.95287 0.96545 0.83534 0.86969 1.20992 0.96566 1.01142 0.98334 1.22218 0.94458 1.05562 0.98733 1.87030 1.51949 1.50797 1.18160 1.23829 1.01739 1.00166 0.97494 1.22684 0.84718 1.03156 0.94207 1.47348 1.28243 1.26040 1.28108 1.20094 0.82562 0.81560 0.86144 1.90657 1.32080 1.60796 1.57442 1.20271 0.82417 0.82549 0.87824 1.90463 1.35297 1.61999 1.55915 1.45539 1.46378 1.19539 1.17495 1.20960 0.94763 0.95117 0.83837 1.19295 0.93259 0.87621 0.99763 1.20714 0.91330 1.01159 1.40885 0.92637 1.25509 1.01847 0.94443 0.94522 1.70013 1.34947 1.05422 1.42382 0.85739 0.81557 0.76974 0.78522 1.20188 1.21770 1.19502 1.22967 1.02960 1.05686 0.91279 1.22963 0.99977 1.01699 0.98156 0.94433 0.89024 0.91319 0.93157 0.87541 0.86505 0.87489 0.85301 0.87379 0.90364 0.87112 0.75810 0.94905 0.89402 0.93261 0.90014 0.90260 0.90030 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 8.13 71.98 0.59 -3.45 16 2 C 0.14 2.96 2.39 45.67 0.11 3.07 16 3 H 0.11 1.77 7.52 -2.39 -0.02 1.75 16 4 C -0.13 -2.52 4.72 28.73 0.14 -2.38 16 5 C -0.06 -0.98 5.79 69.78 0.40 -0.58 16 6 S -0.31 -6.81 21.63 -56.49 -1.22 -8.03 16 7 C -0.08 -1.53 5.90 72.38 0.43 -1.10 16 8 C 0.08 1.95 5.33 86.79 0.46 2.42 16 9 N -0.56 -16.22 2.32 -799.71 -1.86 -18.08 16 10 C 0.51 19.29 7.03 87.27 0.61 19.90 16 11 O -0.53 -21.70 13.16 -3.27 -0.04 -21.74 16 12 C 0.49 20.84 7.67 87.27 0.67 21.51 16 13 O -0.55 -24.15 13.17 -3.25 -0.04 -24.19 16 14 N -0.64 -29.30 4.95 -464.41 -2.30 -31.60 16 15 C 0.18 8.33 4.61 86.38 0.40 8.72 16 16 C 0.00 0.06 2.09 -52.93 -0.11 -0.05 16 17 C -0.50 -25.82 8.30 25.60 0.21 -25.61 16 18 H 0.06 2.86 7.82 -2.91 -0.02 2.84 16 19 C 0.04 1.98 5.28 84.65 0.45 2.43 16 20 N -0.89 -47.74 9.99 21.44 0.21 -47.53 16 21 Si 0.95 42.45 29.54 68.60 2.03 44.48 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 C -0.19 -7.97 9.96 30.62 0.30 -7.67 16 26 C -0.19 -7.70 9.92 30.62 0.30 -7.40 16 27 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 2.11 5.81 -2.39 -0.01 2.09 16 30 H 0.05 1.35 7.43 -2.39 -0.02 1.34 16 31 H 0.11 1.55 7.93 -2.39 -0.02 1.53 16 32 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.11 1.13 8.11 -2.39 -0.02 1.11 16 34 H 0.13 2.08 8.14 -2.47 -0.02 2.06 16 35 H 0.11 1.38 7.90 -2.47 -0.02 1.36 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.11 3.59 4.62 -30.17 -0.14 3.45 16 38 H 0.41 19.17 7.44 -92.71 -0.69 18.48 16 39 H 0.03 1.49 8.05 -2.39 -0.02 1.47 16 40 H 0.09 4.70 5.95 -2.38 -0.01 4.69 16 41 H 0.26 13.60 8.32 -92.70 -0.77 12.83 16 42 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -60.27 363.39 1.92 -58.35 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: 0.18 Total: 38.52 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 4.96 Total: 9.82 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -3.94 Total: -97.20 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -0.09 Total: -45.93 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: -6.81 SS G_CDS: -1.22 Total: -8.03 kcal Total: -60.27 1.92 -58.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330223033.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.276 kcal (2) G-P(sol) polarization free energy of solvation -60.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds