Wall clock time and date at job start Tue Mar 31 2020 14:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 120.00098 * 2 1 4 4 S 1.81402 * 109.47001 * 115.00544 * 3 2 1 5 5 C 1.81394 * 102.99720 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46803 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47082 * 180.02562 * 6 5 4 8 8 C 1.34774 * 120.00243 * 180.02562 * 7 6 5 9 9 O 1.21357 * 119.99737 * 359.97438 * 8 7 6 10 10 C 1.49450 * 120.00173 * 179.97438 * 8 7 6 11 11 O 1.21345 * 120.00237 * 353.32917 * 10 8 7 12 12 N 1.34779 * 119.99959 * 173.33642 * 10 8 7 13 13 C 1.46926 * 120.62965 * 173.06654 * 12 10 8 14 14 C 1.53192 * 108.89029 * 233.55576 * 13 12 10 15 15 C 1.53071 * 109.29669 * 305.57921 * 14 13 12 16 16 C 1.50702 * 109.44365 * 181.24072 * 15 14 13 17 17 H 1.08007 * 119.99829 * 239.79782 * 16 15 14 18 18 C 1.37879 * 120.00166 * 59.78883 * 16 15 14 19 19 N 1.31515 * 119.99785 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99970 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46998 * 359.97438 * 20 18 16 22 22 H 1.48489 * 109.46978 * 120.00571 * 20 18 16 23 23 H 1.48503 * 109.46712 * 240.00375 * 20 18 16 24 24 C 1.53039 * 109.66157 * 61.15585 * 15 14 13 25 25 C 1.46927 * 120.62872 * 353.08530 * 12 10 8 26 26 H 1.08000 * 119.99959 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00084 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99959 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47033 * 355.00506 * 3 2 1 30 30 H 1.08996 * 109.47194 * 235.00897 * 3 2 1 31 31 H 1.09001 * 109.47434 * 60.00232 * 5 4 3 32 32 H 1.09003 * 109.47527 * 299.99755 * 5 4 3 33 33 H 1.08993 * 109.47263 * 59.99918 * 6 5 4 34 34 H 1.09003 * 109.47332 * 299.99532 * 6 5 4 35 35 H 0.96998 * 119.99852 * 359.97438 * 7 6 5 36 36 H 1.08995 * 109.58498 * 353.41300 * 13 12 10 37 37 H 1.09003 * 109.58798 * 113.70109 * 13 12 10 38 38 H 1.08998 * 109.49941 * 65.39130 * 14 13 12 39 39 H 1.09008 * 109.49729 * 185.48788 * 14 13 12 40 40 H 1.09009 * 109.34867 * 301.12720 * 15 14 13 41 41 H 0.97002 * 119.99706 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.49875 * 178.74934 * 24 15 14 43 43 H 1.09001 * 109.52161 * 58.66408 * 24 15 14 44 44 H 1.08997 * 109.58946 * 246.15605 * 25 12 10 45 45 H 1.08998 * 109.59100 * 6.44429 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 16 2.9919 1.4673 1.5500 5 6 3.8177 3.0717 1.3650 6 6 4.6564 3.3603 2.6117 7 7 5.3229 4.6564 2.4626 8 6 6.1208 5.1208 3.4445 9 8 6.2868 4.4655 4.4523 10 6 6.8011 6.4428 3.2921 11 8 6.7339 7.0420 2.2391 12 7 7.4895 6.9693 4.3243 13 6 8.2878 8.1899 4.1467 14 6 9.7174 7.9219 4.6275 15 6 9.6777 7.3968 6.0648 16 6 11.0842 7.1608 6.5517 17 1 11.3891 6.1726 6.8631 18 6 11.9818 8.2063 6.5995 19 7 11.6103 9.4096 6.2206 20 14 13.7254 7.9135 7.2024 21 1 13.8893 6.4835 7.5676 22 1 14.6866 8.2635 6.1260 23 1 13.9861 8.7611 8.3936 24 6 8.8947 6.0827 6.1114 25 6 7.4561 6.3334 5.6484 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3586 2.1317 -0.0895 30 1 2.7555 1.3251 -0.8419 31 1 3.0685 3.8539 1.2416 32 1 4.4659 3.0480 0.4890 33 1 5.4055 2.5782 2.7347 34 1 4.0086 3.3840 3.4880 35 1 5.1905 5.1800 1.6569 36 1 8.3026 8.4666 3.0926 37 1 7.8516 9.0001 4.7312 38 1 10.1844 7.1772 3.9829 39 1 10.2928 8.8470 4.5915 40 1 9.1906 8.1327 6.7048 41 1 12.2417 10.1453 6.2545 42 1 8.8870 5.6998 7.1320 43 1 9.3670 5.3537 5.4529 44 1 6.9536 6.9915 6.3573 45 1 6.9200 5.3865 5.5857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341031007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:47 Heat of formation + Delta-G solvation = -41.428480 kcal Electronic energy + Delta-G solvation = -24768.947244 eV Core-core repulsion = 21106.645907 eV Total energy + Delta-G solvation = -3662.301337 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74185 -38.58463 -37.06106 -35.74299 -35.30611 -33.48116 -31.13559 -31.06882 -30.19522 -28.01832 -26.63286 -25.05195 -23.27943 -22.53637 -21.79683 -20.58240 -20.33109 -18.86621 -17.49098 -17.00999 -16.67874 -16.43072 -16.24262 -15.79063 -15.65824 -15.11856 -14.92765 -14.54341 -14.45125 -14.16784 -13.87572 -13.50322 -13.21593 -12.83467 -12.79338 -12.75433 -12.55293 -12.27822 -12.12087 -11.85452 -11.75311 -11.20593 -10.99570 -10.91022 -10.70980 -10.58440 -10.33823 -10.07723 -9.84881 -9.56674 -9.53957 -9.48029 -8.93838 -8.59656 -8.34970 -8.15188 -8.10182 -6.00570 -4.06659 0.74166 1.53910 1.80422 2.19666 2.56788 3.29085 3.35944 3.37564 3.41720 3.74836 4.15006 4.22432 4.38081 4.40423 4.43175 4.48271 4.79186 4.89280 5.01121 5.29062 5.30306 5.31956 5.41939 5.64984 5.86272 5.91675 6.00227 6.01110 6.08929 6.17252 6.33196 6.37157 6.58378 6.69717 6.81436 6.96266 7.02941 7.17118 7.32001 7.68126 7.72949 7.83860 7.94931 8.07234 8.20969 8.43251 8.97223 9.58410 11.04957 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.034098 B = 0.001901 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.959958 B =14729.135956 C =15133.572159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.145 4.145 3 C -0.062 4.062 4 S -0.230 6.230 5 C -0.109 4.109 6 C 0.135 3.865 7 N -0.703 5.703 8 C 0.513 3.487 9 O -0.501 6.501 10 C 0.500 3.500 11 O -0.542 6.542 12 N -0.559 5.559 13 C 0.104 3.896 14 C -0.122 4.122 15 C 0.044 3.956 16 C -0.510 4.510 17 H 0.056 0.944 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.117 4.117 25 C 0.047 3.953 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.413 0.587 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.107 0.893 40 H 0.027 0.973 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.746 -13.543 -12.503 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.209 4.209 4 S -0.001 6.001 5 C -0.258 4.258 6 C 0.010 3.990 7 N -0.358 5.358 8 C 0.296 3.704 9 O -0.377 6.377 10 C 0.281 3.719 11 O -0.422 6.422 12 N -0.290 5.290 13 C -0.017 4.017 14 C -0.160 4.160 15 C 0.026 3.974 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.155 4.155 25 C -0.074 4.074 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.137 0.863 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.249 0.751 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.125 0.875 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.474 -14.184 -11.453 27.415 hybrid contribution 0.979 1.107 -1.075 1.827 sum -19.495 -13.077 -12.528 26.608 Atomic orbital electron populations 1.23971 0.95602 1.02494 0.98533 1.22372 0.95761 0.96761 1.01525 1.22507 1.01306 0.99684 0.97427 1.87146 1.60271 1.25614 1.27096 1.23563 1.02116 0.98065 1.02013 1.21033 0.96069 0.85304 0.96555 1.45753 1.47323 1.21242 1.21521 1.20526 0.79322 0.87444 0.83157 1.90386 1.61050 1.58711 1.27556 1.19756 0.81437 0.85844 0.84861 1.90704 1.62126 1.61675 1.27649 1.48227 1.43954 1.26641 1.10159 1.22098 0.93489 0.84394 1.01670 1.22043 0.91560 1.03922 0.98506 1.18703 0.94849 0.91333 0.92526 1.21256 0.96002 0.95118 1.42484 0.92595 1.24974 0.98585 0.95172 0.95314 1.69848 1.35070 1.00095 1.48103 0.86556 0.84848 0.78279 0.78440 1.19824 1.21091 1.21068 1.21915 0.93030 1.00612 0.99992 1.23313 1.00957 1.01510 0.81588 0.88226 0.87633 0.86318 0.89539 0.88996 0.89029 0.88968 0.89787 0.89826 0.75108 0.90463 0.91603 0.94279 0.87531 0.95485 0.93044 0.92043 0.93027 0.92376 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 14.32 29.02 0.42 -0.34 16 2 C -0.14 -0.78 9.52 -36.02 -0.34 -1.12 16 3 C -0.06 -0.34 6.38 36.01 0.23 -0.11 16 4 S -0.23 -1.77 21.72 -107.50 -2.33 -4.10 16 5 C -0.11 -0.72 6.05 37.16 0.22 -0.49 16 6 C 0.13 1.22 5.68 -4.04 -0.02 1.19 16 7 N -0.70 -7.65 5.55 -60.73 -0.34 -7.99 16 8 C 0.51 7.60 7.78 -11.59 -0.09 7.51 16 9 O -0.50 -8.25 13.10 5.49 0.07 -8.18 16 10 C 0.50 8.68 7.74 -11.58 -0.09 8.59 16 11 O -0.54 -10.03 15.94 5.50 0.09 -9.94 16 12 N -0.56 -10.48 2.97 -173.27 -0.52 -10.99 16 13 C 0.10 2.08 6.41 -3.71 -0.02 2.06 16 14 C -0.12 -2.84 5.16 -26.60 -0.14 -2.98 16 15 C 0.04 1.08 2.06 -91.71 -0.19 0.90 16 16 C -0.51 -13.87 8.56 -34.44 -0.29 -14.16 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 19 N -0.89 -24.95 11.30 55.43 0.63 -24.33 16 20 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 25 C 0.05 0.86 6.27 -3.71 -0.02 0.84 16 26 H 0.10 0.39 7.84 -52.49 -0.41 -0.02 16 27 H 0.11 0.36 8.06 -52.49 -0.42 -0.06 16 28 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 29 H 0.09 0.40 7.79 -51.93 -0.40 0.00 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.51 8.14 -51.92 -0.42 0.08 16 32 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.41 3.88 7.96 -40.82 -0.33 3.55 16 36 H 0.08 1.51 7.05 -51.93 -0.37 1.14 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.11 2.74 6.03 -51.92 -0.31 2.43 16 40 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.14 2.48 3.78 -56.75 -0.21 2.27 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -30.23 380.18 -9.35 -39.57 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.07 Total: 3.21 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -0.58 Total: 0.85 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.23 Total: -43.30 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.16 Total: -18.12 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.33 Total: -4.10 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.23 -9.35 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341031007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.855 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds