Wall clock time and date at job start Tue Mar 31 2020 14:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.57892 * 2 1 4 4 C 1.53242 * 109.57995 * 239.73012 * 2 1 3 5 5 N 1.46379 * 109.48543 * 182.41024 * 4 2 1 6 6 C 1.34773 * 119.64682 * 245.06596 * 5 4 2 7 7 O 1.21348 * 120.00090 * 354.93314 * 6 5 4 8 8 C 1.49458 * 119.99813 * 174.93739 * 6 5 4 9 9 O 1.21352 * 119.99794 * 275.12815 * 8 6 5 10 10 N 1.34773 * 120.00106 * 95.12947 * 8 6 5 11 11 C 1.46928 * 120.62980 * 5.04957 * 10 8 6 12 12 C 1.53195 * 108.77389 * 233.58238 * 11 10 8 13 13 C 1.53049 * 109.31323 * 305.36420 * 12 11 10 14 14 C 1.53038 * 109.53316 * 61.36256 * 13 12 11 15 15 H 1.09009 * 109.50015 * 58.58907 * 14 13 12 16 16 C 1.50703 * 109.49465 * 178.65009 * 14 13 12 17 17 H 1.07996 * 120.00084 * 0.02562 * 16 14 13 18 18 C 1.37875 * 119.99909 * 180.02562 * 16 14 13 19 19 N 1.31511 * 120.00150 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99758 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47437 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47431 * 120.00563 * 20 18 16 23 23 H 1.48510 * 109.47216 * 240.00102 * 20 18 16 24 24 C 1.46921 * 120.62874 * 184.76265 * 10 8 6 25 25 C 1.46384 * 120.70498 * 65.08852 * 5 4 2 26 26 C 1.53242 * 109.48695 * 294.90979 * 25 5 4 27 27 S 1.81741 * 108.79867 * 57.65733 * 26 25 5 28 28 H 1.08995 * 109.47426 * 180.27549 * 1 2 3 29 29 H 1.09000 * 109.47048 * 300.27072 * 1 2 3 30 30 H 1.09006 * 109.47527 * 60.27052 * 1 2 3 31 31 H 1.08992 * 109.46468 * 302.41451 * 4 2 1 32 32 H 1.08998 * 109.47035 * 62.40713 * 4 2 1 33 33 H 1.08999 * 109.58896 * 353.37089 * 11 10 8 34 34 H 1.09001 * 109.58811 * 113.80115 * 11 10 8 35 35 H 1.08999 * 109.49823 * 65.31147 * 12 11 10 36 36 H 1.08996 * 109.49899 * 185.41478 * 12 11 10 37 37 H 1.08997 * 109.45810 * 181.38077 * 13 12 11 38 38 H 1.09004 * 109.45766 * 301.36084 * 13 12 11 39 39 H 0.97011 * 119.99854 * 180.02562 * 19 18 16 40 40 H 1.09011 * 109.59104 * 246.20157 * 24 10 8 41 41 H 1.08995 * 109.59285 * 6.63127 * 24 10 8 42 42 H 1.09007 * 109.46334 * 174.90888 * 25 5 4 43 43 H 1.08993 * 109.46829 * 54.91592 * 25 5 4 44 44 H 1.09008 * 109.57927 * 297.86320 * 26 25 5 45 45 H 1.08998 * 109.69571 * 177.52072 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2470 5 7 3.5061 -0.7769 -1.2160 6 6 4.2153 -0.1181 -2.1538 7 8 3.6432 0.4347 -3.0701 8 6 5.7064 -0.0685 -2.0652 9 8 6.2458 0.7772 -1.3822 10 7 6.4519 -0.9629 -2.7438 11 6 5.8203 -1.9218 -3.6605 12 6 6.2652 -3.3367 -3.2772 13 6 7.7943 -3.3989 -3.2583 14 6 8.3332 -2.4225 -2.2104 15 1 7.9273 -2.6786 -1.2316 16 6 9.8372 -2.5084 -2.1693 17 1 10.3572 -3.1908 -2.8252 18 6 10.5493 -1.7158 -1.2942 19 7 9.9161 -0.8853 -0.4951 20 14 12.4136 -1.8219 -1.2438 21 1 12.8795 -2.8247 -2.2351 22 1 12.9940 -0.4951 -1.5725 23 1 12.8497 -2.2297 0.1160 24 6 7.9123 -0.9935 -2.5857 25 6 4.2067 -1.5343 -0.1776 26 6 3.9368 -0.8973 1.1898 27 16 2.1425 -0.8645 1.4766 28 1 -0.3634 -1.0276 0.0049 29 1 -0.3633 0.5180 0.8876 30 1 -0.3634 0.5096 -0.8924 31 1 1.6462 -1.7426 -1.2646 32 1 1.7168 -0.1941 -2.1395 33 1 4.7361 -1.8451 -3.5794 34 1 6.1284 -1.7066 -4.6837 35 1 5.8789 -3.5843 -2.2885 36 1 5.8812 -4.0492 -4.0073 37 1 8.1135 -4.4110 -3.0098 38 1 8.1809 -3.1269 -4.2406 39 1 10.4172 -0.3273 0.1204 40 1 8.3876 -0.7040 -3.5231 41 1 8.2089 -0.3042 -1.7953 42 1 5.2779 -1.5217 -0.3791 43 1 3.8495 -2.5640 -0.1755 44 1 4.3275 0.1202 1.2023 45 1 4.4209 -1.4842 1.9704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348697516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:14 Heat of formation + Delta-G solvation = -70.544886 kcal Electronic energy + Delta-G solvation = -27249.633567 eV Core-core repulsion = 23586.069648 eV Total energy + Delta-G solvation = -3663.563919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81815 -38.74246 -36.91007 -36.71816 -33.99517 -33.48048 -31.95087 -30.72062 -29.97177 -27.72082 -25.55094 -25.12280 -23.79111 -22.69772 -22.00001 -21.61161 -19.54516 -18.77160 -17.60979 -17.14276 -16.51870 -16.29781 -16.01213 -15.33034 -14.87910 -14.77157 -14.61971 -14.37457 -14.21587 -13.86527 -13.69641 -13.34792 -13.14922 -12.94986 -12.75453 -12.51802 -12.37859 -12.32113 -12.24066 -12.04462 -11.63828 -11.18627 -11.12488 -11.03132 -10.98565 -10.59836 -10.48991 -10.36534 -10.05525 -9.98679 -9.38361 -9.27020 -9.17323 -8.96995 -8.55674 -8.02461 -7.86145 -6.11670 -4.19611 1.48257 2.21455 2.28625 2.32633 2.92073 3.24172 3.33582 3.35983 3.53319 4.30380 4.34941 4.38371 4.57744 4.70372 4.86108 4.89810 5.11657 5.15707 5.19358 5.20595 5.33749 5.38016 5.43040 5.49293 5.54320 5.59727 5.69402 5.78415 5.87708 6.02472 6.14833 6.17445 6.43783 6.49626 6.69672 6.81493 6.88405 6.95371 7.01442 7.44633 7.69283 7.75320 7.81125 7.95323 8.21718 8.39098 8.84381 9.46986 10.94198 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.003740 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.369646 B = 7485.394444 C = 8066.632042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.092 0.908 4 C 0.112 3.888 5 N -0.604 5.604 6 C 0.519 3.481 7 O -0.519 6.519 8 C 0.505 3.495 9 O -0.510 6.510 10 N -0.586 5.586 11 C 0.107 3.893 12 C -0.132 4.132 13 C -0.112 4.112 14 C 0.042 3.958 15 H 0.031 0.969 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.064 3.936 19 N -0.882 5.882 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.110 3.890 25 C 0.106 3.894 26 C -0.099 4.099 27 S -0.256 6.256 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.264 0.736 40 H 0.049 0.951 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.678 -3.110 -0.200 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.202 4.202 3 H 0.111 0.889 4 C -0.012 4.012 5 N -0.339 5.339 6 C 0.303 3.697 7 O -0.393 6.393 8 C 0.286 3.714 9 O -0.385 6.385 10 N -0.320 5.320 11 C -0.017 4.017 12 C -0.170 4.170 13 C -0.150 4.150 14 C 0.023 3.977 15 H 0.049 0.951 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.139 4.139 19 N -0.519 5.519 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.010 4.010 25 C -0.019 4.019 26 C -0.248 4.248 27 S -0.030 6.030 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.142 0.858 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.205 -2.617 0.688 17.416 hybrid contribution 1.749 0.544 -0.830 2.011 sum -15.455 -2.073 -0.142 15.594 Atomic orbital electron populations 1.21543 0.90865 1.03299 1.03080 1.23588 1.00000 1.01872 0.94689 0.88944 1.21826 0.79025 1.01982 0.98364 1.47996 1.06611 1.50089 1.29197 1.20936 0.89277 0.77805 0.81684 1.90742 1.71143 1.44562 1.32856 1.19923 0.86589 0.83235 0.81640 1.90836 1.71505 1.35466 1.40644 1.48643 1.10161 1.31450 1.41734 1.21737 0.96504 0.89687 0.93746 1.21953 0.99031 0.94780 1.01238 1.21651 0.91952 1.00687 1.00672 1.19055 0.95719 0.89086 0.93812 0.95137 1.21101 0.90623 1.22980 1.21182 0.92138 1.25043 0.98676 0.95105 0.95112 1.69864 1.35438 1.23997 1.22651 0.86518 0.85536 0.77961 0.77905 1.19746 1.20928 1.20949 1.22611 0.72496 1.03421 1.02441 1.21904 0.99048 0.95387 0.85543 1.23881 0.94051 1.06157 1.00718 1.86817 1.06780 1.77221 1.32153 0.91315 0.91317 0.90768 0.89423 0.87591 0.91553 0.91098 0.92081 0.91804 0.92657 0.92941 0.92595 0.93233 0.85805 0.87751 0.88943 0.88778 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 9.23 37.15 0.34 -0.63 16 2 C -0.07 -0.73 3.32 -26.61 -0.09 -0.82 16 3 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 4 C 0.11 1.21 5.52 -3.98 -0.02 1.19 16 5 N -0.60 -8.21 2.79 -174.09 -0.49 -8.69 16 6 C 0.52 8.92 5.45 -11.58 -0.06 8.86 16 7 O -0.52 -9.74 16.37 5.50 0.09 -9.65 16 8 C 0.51 10.14 5.37 -11.58 -0.06 10.08 16 9 O -0.51 -12.08 16.53 5.49 0.09 -11.99 16 10 N -0.59 -11.32 2.97 -173.00 -0.51 -11.83 16 11 C 0.11 1.66 6.35 -3.71 -0.02 1.63 16 12 C -0.13 -1.94 6.08 -26.60 -0.16 -2.10 16 13 C -0.11 -2.04 5.10 -26.69 -0.14 -2.17 16 14 C 0.04 0.96 2.26 -91.43 -0.21 0.75 16 15 H 0.03 0.76 8.14 -51.92 -0.42 0.33 16 16 C -0.52 -13.26 8.56 -34.44 -0.29 -13.55 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.88 -24.26 11.41 55.43 0.63 -23.63 16 20 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 C 0.11 2.50 5.42 -3.49 -0.02 2.48 16 25 C 0.11 1.35 6.12 -3.98 -0.02 1.32 16 26 C -0.10 -1.20 6.67 37.28 0.25 -0.95 16 27 S -0.26 -2.90 21.67 -107.50 -2.33 -5.23 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.11 1.20 6.88 -51.93 -0.36 0.84 16 33 H 0.07 0.95 6.29 -51.93 -0.33 0.62 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.05 1.14 8.14 -51.92 -0.42 0.71 16 41 H 0.12 3.30 5.18 -51.93 -0.27 3.03 16 42 H 0.10 1.61 6.21 -51.93 -0.32 1.29 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.09 1.30 8.14 -51.92 -0.42 0.88 16 45 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -29.88 366.09 -9.78 -39.66 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.16 Total: 2.77 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -0.60 Total: 7.66 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.37 Total: -44.15 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.18 Total: -21.64 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: -2.90 SS G_CDS: -2.33 Total: -5.23 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.88 -9.78 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348697516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.881 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds