Wall clock time and date at job start Tue Mar 31 2020 14:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.57892 * 2 1 4 4 C 1.53242 * 109.57995 * 239.73012 * 2 1 3 5 5 N 1.46379 * 109.48543 * 182.41024 * 4 2 1 6 6 C 1.34773 * 119.64682 * 245.06596 * 5 4 2 7 7 O 1.21348 * 120.00090 * 354.93314 * 6 5 4 8 8 C 1.49458 * 119.99813 * 174.93739 * 6 5 4 9 9 O 1.21352 * 119.99794 * 275.12815 * 8 6 5 10 10 N 1.34773 * 120.00106 * 95.12947 * 8 6 5 11 11 C 1.46928 * 120.62980 * 5.04957 * 10 8 6 12 12 C 1.53195 * 108.77389 * 233.58238 * 11 10 8 13 13 C 1.53049 * 109.31323 * 305.36420 * 12 11 10 14 14 C 1.53038 * 109.53316 * 61.36256 * 13 12 11 15 15 H 1.09009 * 109.50015 * 58.58907 * 14 13 12 16 16 C 1.50703 * 109.49465 * 178.65009 * 14 13 12 17 17 H 1.07996 * 120.00084 * 0.02562 * 16 14 13 18 18 C 1.37875 * 119.99909 * 180.02562 * 16 14 13 19 19 N 1.31511 * 120.00150 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99758 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47437 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47431 * 120.00563 * 20 18 16 23 23 H 1.48510 * 109.47216 * 240.00102 * 20 18 16 24 24 C 1.46921 * 120.62874 * 184.76265 * 10 8 6 25 25 C 1.46384 * 120.70498 * 65.08852 * 5 4 2 26 26 C 1.53242 * 109.48695 * 294.90979 * 25 5 4 27 27 S 1.81741 * 108.79867 * 57.65733 * 26 25 5 28 28 H 1.08995 * 109.47426 * 180.27549 * 1 2 3 29 29 H 1.09000 * 109.47048 * 300.27072 * 1 2 3 30 30 H 1.09006 * 109.47527 * 60.27052 * 1 2 3 31 31 H 1.08992 * 109.46468 * 302.41451 * 4 2 1 32 32 H 1.08998 * 109.47035 * 62.40713 * 4 2 1 33 33 H 1.08999 * 109.58896 * 353.37089 * 11 10 8 34 34 H 1.09001 * 109.58811 * 113.80115 * 11 10 8 35 35 H 1.08999 * 109.49823 * 65.31147 * 12 11 10 36 36 H 1.08996 * 109.49899 * 185.41478 * 12 11 10 37 37 H 1.08997 * 109.45810 * 181.38077 * 13 12 11 38 38 H 1.09004 * 109.45766 * 301.36084 * 13 12 11 39 39 H 0.97011 * 119.99854 * 180.02562 * 19 18 16 40 40 H 1.09011 * 109.59104 * 246.20157 * 24 10 8 41 41 H 1.08995 * 109.59285 * 6.63127 * 24 10 8 42 42 H 1.09007 * 109.46334 * 174.90888 * 25 5 4 43 43 H 1.08993 * 109.46829 * 54.91592 * 25 5 4 44 44 H 1.09008 * 109.57927 * 297.86320 * 26 25 5 45 45 H 1.08998 * 109.69571 * 177.52072 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2470 5 7 3.5061 -0.7769 -1.2160 6 6 4.2153 -0.1181 -2.1538 7 8 3.6432 0.4347 -3.0701 8 6 5.7064 -0.0685 -2.0652 9 8 6.2458 0.7772 -1.3822 10 7 6.4519 -0.9629 -2.7438 11 6 5.8203 -1.9218 -3.6605 12 6 6.2652 -3.3367 -3.2772 13 6 7.7943 -3.3989 -3.2583 14 6 8.3332 -2.4225 -2.2104 15 1 7.9273 -2.6786 -1.2316 16 6 9.8372 -2.5084 -2.1693 17 1 10.3572 -3.1908 -2.8252 18 6 10.5493 -1.7158 -1.2942 19 7 9.9161 -0.8853 -0.4951 20 14 12.4136 -1.8219 -1.2438 21 1 12.8795 -2.8247 -2.2351 22 1 12.9940 -0.4951 -1.5725 23 1 12.8497 -2.2297 0.1160 24 6 7.9123 -0.9935 -2.5857 25 6 4.2067 -1.5343 -0.1776 26 6 3.9368 -0.8973 1.1898 27 16 2.1425 -0.8645 1.4766 28 1 -0.3634 -1.0276 0.0049 29 1 -0.3633 0.5180 0.8876 30 1 -0.3634 0.5096 -0.8924 31 1 1.6462 -1.7426 -1.2646 32 1 1.7168 -0.1941 -2.1395 33 1 4.7361 -1.8451 -3.5794 34 1 6.1284 -1.7066 -4.6837 35 1 5.8789 -3.5843 -2.2885 36 1 5.8812 -4.0492 -4.0073 37 1 8.1135 -4.4110 -3.0098 38 1 8.1809 -3.1269 -4.2406 39 1 10.4172 -0.3273 0.1204 40 1 8.3876 -0.7040 -3.5231 41 1 8.2089 -0.3042 -1.7953 42 1 5.2779 -1.5217 -0.3791 43 1 3.8495 -2.5640 -0.1755 44 1 4.3275 0.1202 1.2023 45 1 4.4209 -1.4842 1.9704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348697516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:13 Heat of formation + Delta-G solvation = -88.149969 kcal Electronic energy + Delta-G solvation = -27250.396980 eV Core-core repulsion = 23586.069648 eV Total energy + Delta-G solvation = -3664.327333 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22727 -40.19185 -38.49217 -37.95274 -35.35881 -34.82347 -33.56154 -31.82205 -31.62755 -28.83535 -27.18074 -26.64389 -25.03214 -23.82469 -23.52144 -22.68937 -21.07341 -20.10569 -19.04763 -18.51785 -18.14441 -17.72514 -17.29028 -16.57498 -16.42653 -16.01779 -15.91438 -15.71404 -15.29380 -15.20279 -15.18233 -14.62831 -14.52010 -14.40453 -14.12494 -13.92952 -13.64818 -13.48617 -13.13559 -13.05304 -12.92459 -12.75405 -12.62300 -12.40658 -12.32678 -12.24407 -11.94008 -11.85880 -11.68242 -11.14583 -10.97504 -10.92091 -10.64665 -10.52568 -10.27539 -9.66846 -8.78818 -8.12501 -6.27101 0.56603 0.82873 0.96057 1.33807 1.40496 1.43865 1.44574 1.54114 2.16173 2.42744 2.97764 3.18064 3.44684 3.62028 3.82102 3.88418 3.89254 4.05123 4.07551 4.10901 4.26489 4.41044 4.47946 4.51635 4.59766 4.65633 4.70094 4.72629 4.76977 4.79609 4.91560 5.03116 5.06751 5.16734 5.22316 5.24139 5.30360 5.39985 5.59266 5.66875 5.85734 5.93625 6.25580 6.31293 6.44585 6.75919 6.86925 7.43140 8.91407 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.003740 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.369646 B = 7485.394444 C = 8066.632042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.070 4.070 3 H 0.073 0.927 4 C 0.110 3.890 5 N -0.591 5.591 6 C 0.528 3.472 7 O -0.536 6.536 8 C 0.499 3.501 9 O -0.560 6.560 10 N -0.584 5.584 11 C 0.102 3.898 12 C -0.121 4.121 13 C -0.106 4.106 14 C 0.043 3.957 15 H 0.002 0.998 16 C -0.532 4.532 17 H 0.063 0.937 18 C 0.014 3.986 19 N -0.913 5.913 20 Si 0.952 3.048 21 H -0.262 1.262 22 H -0.287 1.287 23 H -0.282 1.282 24 C 0.123 3.877 25 C 0.107 3.893 26 C -0.101 4.101 27 S -0.247 6.247 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.260 0.740 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.125 0.875 44 H 0.067 0.933 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.861 -5.270 -1.186 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.200 4.200 3 H 0.092 0.908 4 C -0.012 4.012 5 N -0.324 5.324 6 C 0.311 3.689 7 O -0.413 6.413 8 C 0.281 3.719 9 O -0.438 6.438 10 N -0.317 5.317 11 C -0.020 4.020 12 C -0.159 4.159 13 C -0.144 4.144 14 C 0.024 3.976 15 H 0.020 0.980 16 C -0.570 4.570 17 H 0.081 0.919 18 C -0.185 4.185 19 N -0.552 5.552 20 Si 0.778 3.222 21 H -0.186 1.186 22 H -0.213 1.213 23 H -0.208 1.208 24 C 0.001 3.999 25 C -0.017 4.017 26 C -0.250 4.250 27 S -0.020 6.020 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.136 0.864 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.143 0.857 44 H 0.086 0.914 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.425 -4.832 -0.304 20.020 hybrid contribution 2.395 1.216 -0.492 2.731 sum -17.030 -3.616 -0.796 17.428 Atomic orbital electron populations 1.21553 0.88315 1.04409 1.03913 1.23664 1.01932 1.00547 0.93829 0.90833 1.22133 0.76623 1.03882 0.98583 1.48030 1.07882 1.48538 1.27973 1.20240 0.87618 0.78471 0.82565 1.90736 1.70828 1.45781 1.33947 1.20537 0.88239 0.82406 0.80685 1.90800 1.72902 1.37495 1.42638 1.48630 1.08947 1.32048 1.42048 1.22046 0.97374 0.89196 0.93361 1.21901 0.96161 0.94953 1.02843 1.21539 0.94608 0.99337 0.98906 1.18976 0.94464 0.90156 0.94023 0.97976 1.21524 0.92429 1.22431 1.20643 0.91920 1.25794 1.02699 0.94973 0.95060 1.70038 1.36741 1.24915 1.23481 0.85589 0.80805 0.77801 0.77976 1.18563 1.21291 1.20839 1.22083 0.74871 1.02568 1.00336 1.21980 0.97414 0.96885 0.85390 1.23806 0.95514 1.04797 1.00853 1.86800 1.05076 1.77046 1.33091 0.90007 0.91181 0.89271 0.86352 0.87577 0.89626 0.89874 0.91740 0.87588 0.92093 0.92631 0.93116 0.94068 0.90051 0.90820 0.85712 0.91390 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.23 71.98 0.66 -0.82 16 2 C -0.07 -1.29 3.32 30.67 0.10 -1.19 16 3 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.11 2.09 5.52 86.48 0.48 2.57 16 5 N -0.59 -15.31 2.79 -823.06 -2.30 -17.60 16 6 C 0.53 17.98 5.45 87.27 0.48 18.46 16 7 O -0.54 -19.71 16.37 -3.24 -0.05 -19.76 16 8 C 0.50 20.71 5.37 87.27 0.47 21.18 16 9 O -0.56 -28.34 16.53 -3.25 -0.05 -28.39 16 10 N -0.58 -22.92 2.97 -819.62 -2.43 -25.35 16 11 C 0.10 2.96 6.35 86.36 0.55 3.51 16 12 C -0.12 -3.18 6.08 30.68 0.19 -3.00 16 13 C -0.11 -3.70 5.10 30.62 0.16 -3.54 16 14 C 0.04 1.99 2.26 -11.32 -0.03 1.96 16 15 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 16 C -0.53 -27.54 8.56 25.60 0.22 -27.32 16 17 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 18 C 0.01 0.78 5.30 84.65 0.45 1.22 16 19 N -0.91 -52.60 11.41 21.45 0.24 -52.36 16 20 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 21 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 C 0.12 5.82 5.42 86.51 0.47 6.28 16 25 C 0.11 2.65 6.12 86.48 0.53 3.18 16 26 C -0.10 -2.43 6.67 72.06 0.48 -1.95 16 27 S -0.25 -5.14 21.67 -56.49 -1.22 -6.37 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.11 2.11 6.88 -2.39 -0.02 2.10 16 33 H 0.09 2.21 6.29 -2.39 -0.02 2.19 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 40 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.08 4.62 5.18 -2.39 -0.01 4.61 16 42 H 0.07 2.34 6.21 -2.38 -0.01 2.32 16 43 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 45 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -68.71 366.09 2.39 -66.31 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.98 Total: 18.28 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: 5.20 Total: 20.55 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -4.48 Total: -95.32 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -0.11 Total: -48.16 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -1.22 Total: -6.37 kcal Total: -68.71 2.39 -66.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348697516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.837 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds