Wall clock time and date at job start Tue Mar 31 2020 14:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.01575 * 2 1 4 4 C 1.50974 * 109.95752 * 121.24809 * 2 1 3 5 5 N 1.29721 * 128.67096 * 288.72303 * 4 2 1 6 6 N 1.28934 * 109.42647 * 179.61511 * 5 4 2 7 7 C 1.30820 * 109.74102 * 0.06412 * 6 5 4 8 8 N 1.34801 * 107.11734 * 0.15588 * 7 6 5 9 9 C 1.46219 * 128.60337 * 179.48964 * 8 7 6 10 10 C 1.53336 * 109.17287 * 161.75392 * 9 8 7 11 11 N 1.47073 * 109.23860 * 45.66731 * 10 9 8 12 12 C 1.34776 * 120.94831 * 116.45397 * 11 10 9 13 13 O 1.21284 * 119.99972 * 179.97438 * 12 11 10 14 14 C 1.50694 * 120.00057 * 359.97277 * 12 11 10 15 15 H 1.09002 * 109.46924 * 60.00575 * 14 12 11 16 16 C 1.50691 * 109.47623 * 300.00344 * 14 12 11 17 17 H 1.08004 * 120.00081 * 335.06600 * 16 14 12 18 18 C 1.37873 * 120.00504 * 155.06927 * 16 14 12 19 19 N 1.31511 * 120.00529 * 183.96503 * 18 16 14 20 20 Si 1.86797 * 119.99938 * 3.96081 * 18 16 14 21 21 H 1.48499 * 109.47194 * 84.81841 * 20 18 16 22 22 H 1.48499 * 109.47655 * 204.82479 * 20 18 16 23 23 H 1.48507 * 109.47274 * 324.82415 * 20 18 16 24 24 C 1.50694 * 109.47162 * 179.97438 * 14 12 11 25 25 C 1.38236 * 120.00228 * 66.25711 * 24 14 12 26 26 C 1.38240 * 120.00403 * 179.74414 * 25 24 14 27 27 C 1.38232 * 119.99825 * 0.52786 * 26 25 24 28 28 C 1.38237 * 119.99751 * 359.74781 * 27 26 25 29 29 C 1.38231 * 120.00599 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.46548 * 298.75608 * 1 2 3 31 31 H 1.08999 * 109.47127 * 58.75367 * 1 2 3 32 32 H 1.08993 * 109.46938 * 178.75565 * 1 2 3 33 33 H 1.07992 * 126.44503 * 180.13180 * 7 6 5 34 34 H 1.09001 * 109.52246 * 41.84223 * 9 8 7 35 35 H 1.09004 * 109.56928 * 281.69336 * 9 8 7 36 36 H 1.08990 * 109.51005 * 285.73683 * 10 9 8 37 37 H 1.09007 * 109.50510 * 165.59521 * 10 9 8 38 38 H 0.97000 * 120.00918 * 179.97438 * 19 18 16 39 39 H 1.08003 * 119.99679 * 359.97438 * 25 24 14 40 40 H 1.08001 * 119.99970 * 180.29448 * 26 25 24 41 41 H 1.07991 * 120.00002 * 179.76923 * 27 26 25 42 42 H 1.08000 * 119.99420 * 180.02562 * 28 27 26 43 43 H 1.07994 * 120.00401 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0453 -0.7361 1.2132 5 7 2.0164 -0.3689 2.4570 6 7 2.5528 -1.2859 3.1875 7 6 2.9477 -2.2781 2.4319 8 7 2.6406 -1.9546 1.1598 9 6 2.8829 -2.7225 -0.0607 10 6 1.9797 -2.1889 -1.1791 11 7 2.0335 -0.7192 -1.1857 12 6 2.5281 -0.0485 -2.2449 13 8 2.5638 1.1638 -2.2322 14 6 3.0368 -0.8048 -3.4450 15 1 2.2292 -1.4034 -3.8662 16 6 4.1671 -1.7093 -3.0267 17 1 4.7517 -1.4730 -2.1499 18 6 4.4552 -2.8386 -3.7634 19 7 5.3898 -3.6691 -3.3557 20 14 3.5179 -3.1890 -5.3408 21 1 4.1545 -2.4602 -6.4672 22 1 3.5427 -4.6477 -5.6178 23 1 2.1110 -2.7375 -5.1913 24 6 3.5310 0.1713 -4.4814 25 6 4.6416 0.9522 -4.2214 26 6 5.0981 1.8437 -5.1742 27 6 4.4375 1.9622 -6.3826 28 6 3.3235 1.1854 -6.6404 29 6 2.8703 0.2897 -5.6900 30 1 -0.3632 0.4944 0.9010 31 1 -0.3633 0.5331 -0.8786 32 1 -0.3633 -1.0274 -0.0223 33 1 3.4294 -3.1856 2.7645 34 1 2.6574 -3.7736 0.1194 35 1 3.9273 -2.6195 -0.3556 36 1 0.9543 -2.5149 -1.0055 37 1 2.3260 -2.5703 -2.1398 38 1 5.5922 -4.4638 -3.8737 39 1 5.1549 0.8631 -3.2753 40 1 5.9686 2.4504 -4.9728 41 1 4.7919 2.6614 -7.1254 42 1 2.8076 1.2777 -7.5847 43 1 2.0003 -0.3174 -5.8915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361796272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:14 Heat of formation + Delta-G solvation = 83.422283 kcal Electronic energy + Delta-G solvation = -28629.410727 eV Core-core repulsion = 24869.372125 eV Total energy + Delta-G solvation = -3760.038602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.08060 -39.86092 -38.30441 -36.51225 -34.44556 -33.98855 -32.05758 -31.50232 -30.23571 -29.78058 -28.65397 -27.80624 -24.51351 -23.86009 -23.37319 -22.28591 -21.97007 -21.26296 -19.78424 -18.23267 -17.45273 -17.21577 -16.61663 -16.24577 -16.03168 -15.55261 -15.02828 -14.70734 -14.65747 -14.25705 -14.12310 -13.91427 -13.36981 -13.01940 -12.86510 -12.75310 -12.64833 -12.46860 -12.17553 -12.07449 -11.92890 -11.69815 -11.40732 -11.27553 -11.13627 -11.02962 -10.60803 -10.42071 -10.26924 -10.08771 -9.92272 -9.70670 -9.18541 -9.06284 -8.92188 -8.53843 -8.23007 -7.94079 -6.53384 -4.58030 2.01653 2.03922 2.10614 2.62635 2.99694 3.02657 3.09248 3.15063 3.17801 3.33146 4.03061 4.25873 4.49134 4.65805 4.75756 4.77847 5.06450 5.17120 5.22284 5.27965 5.44457 5.49451 5.50105 5.54872 5.67171 5.71186 5.79643 5.89577 5.96017 5.99144 6.13013 6.15312 6.17983 6.20246 6.30534 6.32955 6.59098 6.73892 6.75998 7.01268 7.03903 7.07562 7.15275 7.45406 7.65093 7.74906 7.99046 8.43055 8.72988 8.88349 9.02734 10.55918 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.005074 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.413040 B = 5516.839440 C = 6548.313564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.227 3.773 3 H 0.123 0.877 4 C 0.173 3.827 5 N -0.292 5.292 6 N -0.308 5.308 7 C 0.151 3.849 8 N -0.461 5.461 9 C 0.089 3.911 10 C 0.098 3.902 11 N -0.614 5.614 12 C 0.547 3.453 13 O -0.545 6.545 14 C 0.023 3.977 15 H 0.072 0.928 16 C -0.517 4.517 17 H 0.083 0.917 18 C 0.090 3.910 19 N -0.877 5.877 20 Si 0.860 3.140 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.261 1.261 24 C -0.034 4.034 25 C -0.070 4.070 26 C -0.129 4.129 27 C -0.140 4.140 28 C -0.129 4.129 29 C -0.136 4.136 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.217 0.783 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.066 0.934 37 H 0.144 0.856 38 H 0.272 0.728 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.590 -0.297 0.066 6.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.121 3.879 3 H 0.141 0.859 4 C -0.097 4.097 5 N -0.132 5.132 6 N -0.148 5.148 7 C -0.137 4.137 8 N -0.151 5.151 9 C -0.034 4.034 10 C -0.025 4.025 11 N -0.349 5.349 12 C 0.338 3.662 13 O -0.422 6.422 14 C 0.001 3.999 15 H 0.090 0.910 16 C -0.554 4.554 17 H 0.101 0.899 18 C -0.117 4.117 19 N -0.511 5.511 20 Si 0.687 3.313 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.186 1.186 24 C -0.035 4.035 25 C -0.088 4.088 26 C -0.147 4.147 27 C -0.158 4.158 28 C -0.147 4.147 29 C -0.154 4.154 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.233 0.767 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.084 0.916 37 H 0.161 0.839 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.672 0.961 1.232 6.853 hybrid contribution 0.174 -1.430 -1.979 2.448 sum -6.498 -0.469 -0.747 6.557 Atomic orbital electron populations 1.22038 0.92863 1.02574 1.03348 1.19533 0.94287 0.96298 0.77794 0.85887 1.24926 1.00833 0.86884 0.97026 1.73977 1.18494 1.21616 0.99100 1.74428 1.14582 0.99406 1.26433 1.26257 1.04253 1.02652 0.80547 1.46257 1.43272 1.16512 1.09042 1.22591 1.04630 0.95271 0.80936 1.22197 0.98171 0.80163 1.02004 1.48233 1.63669 1.06568 1.16461 1.21140 0.74032 0.87437 0.83628 1.90634 1.55689 1.14386 1.81451 1.18579 0.98582 0.93649 0.89077 0.91011 1.20484 1.15154 1.05771 1.13970 0.89909 1.24893 0.94686 0.95364 0.96709 1.69827 1.30208 1.12427 1.38661 0.87107 0.81187 0.77777 0.85275 1.18824 1.21085 1.18602 1.20027 0.94467 0.94412 0.94630 1.20845 0.95386 0.94025 0.98583 1.21052 0.99892 0.99446 0.94292 1.20891 0.97000 1.00549 0.97349 1.20892 0.97521 0.97487 0.98780 1.20985 1.00039 0.99640 0.94744 0.90577 0.90902 0.92411 0.76655 0.88130 0.86619 0.91625 0.83860 0.91820 0.86474 0.87037 0.87228 0.87188 0.87319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.45 37.16 0.35 -1.57 16 2 C 0.23 3.60 3.25 -68.38 -0.22 3.37 16 3 H 0.12 2.14 7.23 -51.93 -0.38 1.77 16 4 C 0.17 2.88 7.16 -155.31 -1.11 1.77 16 5 N -0.29 -5.34 12.21 32.78 0.40 -4.94 16 6 N -0.31 -5.39 12.23 29.60 0.36 -5.03 16 7 C 0.15 2.15 12.81 -90.33 -1.16 0.99 16 8 N -0.46 -6.91 3.11 -115.47 -0.36 -7.27 16 9 C 0.09 1.22 7.18 -4.02 -0.03 1.19 16 10 C 0.10 1.42 5.55 -3.56 -0.02 1.40 16 11 N -0.61 -10.25 2.63 -165.83 -0.44 -10.69 16 12 C 0.55 10.72 6.99 -10.99 -0.08 10.64 16 13 O -0.55 -11.96 14.97 5.55 0.08 -11.88 16 14 C 0.02 0.45 1.10 -94.09 -0.10 0.35 16 15 H 0.07 1.39 5.07 -51.93 -0.26 1.13 16 16 C -0.52 -11.33 5.59 -34.45 -0.19 -11.52 16 17 H 0.08 2.04 7.65 -52.48 -0.40 1.64 16 18 C 0.09 2.05 5.33 -17.82 -0.09 1.95 16 19 N -0.88 -21.56 13.96 55.43 0.77 -20.79 16 20 Si 0.86 17.83 25.97 -169.99 -4.41 13.42 16 21 H -0.26 -5.78 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.26 -4.96 6.14 56.52 0.35 -4.61 16 24 C -0.03 -0.71 3.59 -104.62 -0.38 -1.08 16 25 C -0.07 -1.44 8.32 -39.58 -0.33 -1.77 16 26 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 27 C -0.14 -2.33 10.05 -39.58 -0.40 -2.73 16 28 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 16 29 C -0.14 -2.57 8.58 -39.58 -0.34 -2.91 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.69 7.46 -51.93 -0.39 0.31 16 33 H 0.22 2.07 8.06 -52.49 -0.42 1.65 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.12 1.88 7.49 -51.93 -0.39 1.49 16 36 H 0.07 0.79 7.47 -51.93 -0.39 0.40 16 37 H 0.14 2.29 4.78 -51.93 -0.25 2.05 16 38 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 39 H 0.12 2.51 7.89 -52.48 -0.41 2.09 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 43 H 0.11 1.89 7.95 -52.49 -0.42 1.47 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -28.83 348.41 -8.67 -37.49 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.43 Total: 9.67 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -4.90 Total: -5.24 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.74 Total: -48.72 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -4.41 Total: 13.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.83 -8.67 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361796272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.916 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds