Wall clock time and date at job start Tue Mar 31 2020 14:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.01575 * 2 1 4 4 C 1.50974 * 109.95752 * 121.24809 * 2 1 3 5 5 N 1.29721 * 128.67096 * 288.72303 * 4 2 1 6 6 N 1.28934 * 109.42647 * 179.61511 * 5 4 2 7 7 C 1.30820 * 109.74102 * 0.06412 * 6 5 4 8 8 N 1.34801 * 107.11734 * 0.15588 * 7 6 5 9 9 C 1.46219 * 128.60337 * 179.48964 * 8 7 6 10 10 C 1.53336 * 109.17287 * 161.75392 * 9 8 7 11 11 N 1.47073 * 109.23860 * 45.66731 * 10 9 8 12 12 C 1.34776 * 120.94831 * 116.45397 * 11 10 9 13 13 O 1.21284 * 119.99972 * 179.97438 * 12 11 10 14 14 C 1.50694 * 120.00057 * 359.97277 * 12 11 10 15 15 H 1.09002 * 109.46924 * 60.00575 * 14 12 11 16 16 C 1.50691 * 109.47623 * 300.00344 * 14 12 11 17 17 H 1.08004 * 120.00081 * 335.06600 * 16 14 12 18 18 C 1.37873 * 120.00504 * 155.06927 * 16 14 12 19 19 N 1.31511 * 120.00529 * 183.96503 * 18 16 14 20 20 Si 1.86797 * 119.99938 * 3.96081 * 18 16 14 21 21 H 1.48499 * 109.47194 * 84.81841 * 20 18 16 22 22 H 1.48499 * 109.47655 * 204.82479 * 20 18 16 23 23 H 1.48507 * 109.47274 * 324.82415 * 20 18 16 24 24 C 1.50694 * 109.47162 * 179.97438 * 14 12 11 25 25 C 1.38236 * 120.00228 * 66.25711 * 24 14 12 26 26 C 1.38240 * 120.00403 * 179.74414 * 25 24 14 27 27 C 1.38232 * 119.99825 * 0.52786 * 26 25 24 28 28 C 1.38237 * 119.99751 * 359.74781 * 27 26 25 29 29 C 1.38231 * 120.00599 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.46548 * 298.75608 * 1 2 3 31 31 H 1.08999 * 109.47127 * 58.75367 * 1 2 3 32 32 H 1.08993 * 109.46938 * 178.75565 * 1 2 3 33 33 H 1.07992 * 126.44503 * 180.13180 * 7 6 5 34 34 H 1.09001 * 109.52246 * 41.84223 * 9 8 7 35 35 H 1.09004 * 109.56928 * 281.69336 * 9 8 7 36 36 H 1.08990 * 109.51005 * 285.73683 * 10 9 8 37 37 H 1.09007 * 109.50510 * 165.59521 * 10 9 8 38 38 H 0.97000 * 120.00918 * 179.97438 * 19 18 16 39 39 H 1.08003 * 119.99679 * 359.97438 * 25 24 14 40 40 H 1.08001 * 119.99970 * 180.29448 * 26 25 24 41 41 H 1.07991 * 120.00002 * 179.76923 * 27 26 25 42 42 H 1.08000 * 119.99420 * 180.02562 * 28 27 26 43 43 H 1.07994 * 120.00401 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0453 -0.7361 1.2132 5 7 2.0164 -0.3689 2.4570 6 7 2.5528 -1.2859 3.1875 7 6 2.9477 -2.2781 2.4319 8 7 2.6406 -1.9546 1.1598 9 6 2.8829 -2.7225 -0.0607 10 6 1.9797 -2.1889 -1.1791 11 7 2.0335 -0.7192 -1.1857 12 6 2.5281 -0.0485 -2.2449 13 8 2.5638 1.1638 -2.2322 14 6 3.0368 -0.8048 -3.4450 15 1 2.2292 -1.4034 -3.8662 16 6 4.1671 -1.7093 -3.0267 17 1 4.7517 -1.4730 -2.1499 18 6 4.4552 -2.8386 -3.7634 19 7 5.3898 -3.6691 -3.3557 20 14 3.5179 -3.1890 -5.3408 21 1 4.1545 -2.4602 -6.4672 22 1 3.5427 -4.6477 -5.6178 23 1 2.1110 -2.7375 -5.1913 24 6 3.5310 0.1713 -4.4814 25 6 4.6416 0.9522 -4.2214 26 6 5.0981 1.8437 -5.1742 27 6 4.4375 1.9622 -6.3826 28 6 3.3235 1.1854 -6.6404 29 6 2.8703 0.2897 -5.6900 30 1 -0.3632 0.4944 0.9010 31 1 -0.3633 0.5331 -0.8786 32 1 -0.3633 -1.0274 -0.0223 33 1 3.4294 -3.1856 2.7645 34 1 2.6574 -3.7736 0.1194 35 1 3.9273 -2.6195 -0.3556 36 1 0.9543 -2.5149 -1.0055 37 1 2.3260 -2.5703 -2.1398 38 1 5.5922 -4.4638 -3.8737 39 1 5.1549 0.8631 -3.2753 40 1 5.9686 2.4504 -4.9728 41 1 4.7919 2.6614 -7.1254 42 1 2.8076 1.2777 -7.5847 43 1 2.0003 -0.3174 -5.8915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361796272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:13 Heat of formation + Delta-G solvation = 68.805215 kcal Electronic energy + Delta-G solvation = -28630.044570 eV Core-core repulsion = 24869.372125 eV Total energy + Delta-G solvation = -3760.672445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.33052 -41.33258 -39.69155 -37.90993 -35.83539 -35.47753 -33.59406 -32.91483 -31.64495 -31.01844 -29.92161 -29.27559 -25.98171 -25.12638 -24.79870 -23.50952 -23.38671 -22.65125 -21.16334 -19.58296 -19.10919 -18.55729 -18.02597 -17.58277 -17.38387 -16.87118 -16.48716 -16.08992 -16.04810 -15.61507 -15.46067 -15.21634 -14.87702 -14.46703 -14.27949 -14.17073 -14.01303 -13.69083 -13.60522 -13.45428 -13.11270 -12.97540 -12.95156 -12.71496 -12.47389 -12.34880 -12.06889 -11.96197 -11.62382 -11.52409 -11.44202 -11.08295 -10.87487 -10.58144 -10.34903 -9.89030 -9.65518 -9.39397 -8.31995 -6.38076 0.61725 0.67787 0.80694 1.35381 1.42065 1.46791 1.47408 1.65243 1.78036 1.96624 2.32077 2.97559 3.02769 3.11234 3.49798 3.70655 3.82284 4.01796 4.05279 4.10760 4.15273 4.18209 4.19131 4.31063 4.34933 4.37383 4.57989 4.65178 4.72569 4.76764 4.80132 4.82060 4.88777 4.94821 5.05103 5.14991 5.16574 5.30084 5.38957 5.46087 5.68240 5.72652 5.84598 5.93174 6.18827 6.25070 6.35539 6.60496 7.20802 7.24031 7.62139 8.80014 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.005074 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.413040 B = 5516.839440 C = 6548.313564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.227 3.773 3 H 0.099 0.901 4 C 0.164 3.836 5 N -0.319 5.319 6 N -0.344 5.344 7 C 0.169 3.831 8 N -0.463 5.463 9 C 0.095 3.905 10 C 0.094 3.906 11 N -0.610 5.610 12 C 0.543 3.457 13 O -0.576 6.576 14 C 0.027 3.973 15 H 0.084 0.916 16 C -0.493 4.493 17 H 0.044 0.956 18 C 0.056 3.944 19 N -0.916 5.916 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.230 1.230 24 C -0.059 4.059 25 C -0.101 4.101 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.127 4.127 29 C -0.151 4.151 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.261 0.739 34 H 0.141 0.859 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.271 0.729 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.359 -0.969 -1.493 8.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.121 3.879 3 H 0.117 0.883 4 C -0.106 4.106 5 N -0.159 5.159 6 N -0.183 5.183 7 C -0.119 4.119 8 N -0.152 5.152 9 C -0.028 4.028 10 C -0.028 4.028 11 N -0.344 5.344 12 C 0.334 3.666 13 O -0.455 6.455 14 C 0.006 3.994 15 H 0.102 0.898 16 C -0.531 4.531 17 H 0.062 0.938 18 C -0.147 4.147 19 N -0.553 5.553 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.153 1.153 24 C -0.060 4.060 25 C -0.119 4.119 26 C -0.154 4.154 27 C -0.154 4.154 28 C -0.145 4.145 29 C -0.169 4.169 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.277 0.723 34 H 0.159 0.841 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.149 0.851 41 H 0.165 0.835 42 H 0.165 0.835 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.471 0.282 -0.296 8.481 hybrid contribution 0.824 -1.155 -1.452 2.030 sum -7.648 -0.873 -1.749 7.894 Atomic orbital electron populations 1.21967 0.90159 1.03687 1.03859 1.19585 0.96207 0.94880 0.77187 0.88275 1.24995 1.01239 0.87582 0.96775 1.73907 1.19568 1.22517 0.99869 1.74366 1.16158 1.00417 1.27356 1.27105 1.02125 1.02951 0.79739 1.46372 1.43061 1.16137 1.09678 1.22581 1.02662 0.97182 0.80339 1.22352 1.00308 0.78556 1.01632 1.48232 1.62621 1.07651 1.15859 1.21099 0.74063 0.87091 0.84320 1.90607 1.57110 1.15603 1.82186 1.18505 0.97913 0.93464 0.89513 0.89834 1.20256 1.14823 1.05742 1.12274 0.93825 1.25357 0.95296 0.95180 0.98820 1.69929 1.32164 1.13180 1.39994 0.86419 0.81904 0.77287 0.81672 1.20416 1.21163 1.15310 1.20123 0.95090 0.95214 0.95585 1.20822 0.96419 0.96170 0.98530 1.21350 1.00648 0.98884 0.94483 1.21340 0.96359 1.00550 0.97193 1.21371 0.97344 0.96116 0.99634 1.21267 1.00598 1.00589 0.94416 0.89911 0.90514 0.90903 0.72288 0.84107 0.89712 0.88038 0.85245 0.91976 0.89289 0.85119 0.83493 0.83529 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.45 71.98 0.68 -2.69 16 2 C 0.23 7.23 3.25 44.14 0.14 7.37 16 3 H 0.10 3.62 7.23 -2.39 -0.02 3.61 16 4 C 0.16 5.45 7.16 138.23 0.99 6.44 16 5 N -0.32 -11.70 12.21 -50.19 -0.61 -12.32 16 6 N -0.34 -11.79 12.23 -60.27 -0.74 -12.53 16 7 C 0.17 4.51 12.81 180.25 2.31 6.82 16 8 N -0.46 -13.35 3.11 -519.24 -1.62 -14.97 16 9 C 0.09 2.49 7.18 86.55 0.62 3.11 16 10 C 0.09 2.59 5.55 86.38 0.48 3.07 16 11 N -0.61 -20.34 2.63 -796.94 -2.10 -22.44 16 12 C 0.54 21.76 6.99 87.66 0.61 22.37 16 13 O -0.58 -26.19 14.97 -3.04 -0.05 -26.24 16 14 C 0.03 1.10 1.10 -13.04 -0.01 1.09 16 15 H 0.08 3.12 5.07 -2.39 -0.01 3.11 16 16 C -0.49 -22.29 5.59 25.60 0.14 -22.15 16 17 H 0.04 2.29 7.65 -2.91 -0.02 2.27 16 18 C 0.06 2.58 5.33 84.65 0.45 3.03 16 19 N -0.92 -46.08 13.96 21.45 0.30 -45.79 16 20 Si 0.90 35.78 25.97 68.60 1.78 37.56 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.29 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.23 -7.87 6.14 99.48 0.61 -7.26 16 24 C -0.06 -2.44 3.59 -19.86 -0.07 -2.51 16 25 C -0.10 -4.27 8.32 22.27 0.19 -4.09 16 26 C -0.14 -4.79 10.05 22.27 0.22 -4.57 16 27 C -0.14 -4.16 10.05 22.27 0.22 -3.94 16 28 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 29 C -0.15 -5.41 8.58 22.27 0.19 -5.22 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.56 7.46 -2.39 -0.02 1.54 16 33 H 0.26 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.08 2.82 7.49 -2.38 -0.02 2.80 16 36 H 0.10 2.11 7.47 -2.39 -0.02 2.10 16 37 H 0.13 4.01 4.78 -2.38 -0.01 4.00 16 38 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 39 H 0.09 4.12 7.89 -2.91 -0.02 4.10 16 40 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 41 H 0.15 3.35 8.06 -2.92 -0.02 3.33 16 42 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 43 H 0.12 3.96 7.95 -2.91 -0.02 3.94 16 Total: -1.00 -65.75 348.41 5.30 -60.44 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.94 Total: 31.83 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 7.39 Total: 4.44 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -4.76 Total: -108.04 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 1.78 Total: 37.56 kcal Total: -65.75 5.30 -60.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361796272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.249 kcal (2) G-P(sol) polarization free energy of solvation -65.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds