Wall clock time and date at job start Tue Mar 31 2020 14:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.93942 * 2 1 4 4 C 1.50969 * 109.95874 * 238.79895 * 2 1 3 5 5 N 1.29724 * 128.67585 * 50.01144 * 4 2 1 6 6 N 1.28930 * 109.42653 * 179.41042 * 5 4 2 7 7 C 1.30821 * 109.74253 * 0.10886 * 6 5 4 8 8 N 1.34794 * 107.11962 * 0.13035 * 7 6 5 9 9 C 1.46216 * 128.60794 * 179.54587 * 8 7 6 10 10 C 1.53331 * 109.17896 * 161.62315 * 9 8 7 11 11 N 1.47082 * 109.28030 * 45.63718 * 10 9 8 12 12 C 1.34780 * 120.94240 * 116.45446 * 11 10 9 13 13 O 1.21284 * 119.99898 * 185.36082 * 12 11 10 14 14 C 1.50696 * 120.00027 * 5.36642 * 12 11 10 15 15 H 1.09005 * 109.47274 * 299.99670 * 14 12 11 16 16 C 1.50703 * 109.47471 * 59.99888 * 14 12 11 17 17 H 1.07995 * 119.99801 * 236.30962 * 16 14 12 18 18 C 1.37877 * 119.99575 * 56.30617 * 16 14 12 19 19 N 1.31509 * 120.00244 * 349.28905 * 18 16 14 20 20 Si 1.86799 * 119.99630 * 169.28834 * 18 16 14 21 21 H 1.48503 * 109.47140 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47255 * 119.99828 * 20 18 16 23 23 H 1.48502 * 109.47193 * 240.00039 * 20 18 16 24 24 C 1.50704 * 109.47036 * 180.02562 * 14 12 11 25 25 C 1.38233 * 119.99601 * 226.88294 * 24 14 12 26 26 C 1.38243 * 119.99900 * 179.76481 * 25 24 14 27 27 C 1.38236 * 119.99539 * 0.50410 * 26 25 24 28 28 C 1.38231 * 120.00175 * 359.74818 * 27 26 25 29 29 C 1.38236 * 119.99976 * 47.15189 * 24 14 12 30 30 H 1.08997 * 109.46983 * 188.47523 * 1 2 3 31 31 H 1.09001 * 109.47202 * 308.47560 * 1 2 3 32 32 H 1.09000 * 109.46668 * 68.47338 * 1 2 3 33 33 H 1.08003 * 126.44461 * 180.09673 * 7 6 5 34 34 H 1.08996 * 109.52661 * 41.71018 * 9 8 7 35 35 H 1.09005 * 109.51711 * 281.52867 * 9 8 7 36 36 H 1.08997 * 109.51581 * 165.59332 * 10 9 8 37 37 H 1.09003 * 109.50581 * 285.68982 * 10 9 8 38 38 H 0.97003 * 119.99668 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.00339 * 359.97438 * 25 24 14 40 40 H 1.07990 * 120.00204 * 180.22990 * 26 25 24 41 41 H 1.08002 * 119.99650 * 179.72694 * 27 26 25 42 42 H 1.08001 * 119.99944 * 179.97438 * 28 27 26 43 43 H 1.07994 * 119.99767 * 0.02562 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9018 1.0247 0.0000 4 6 2.0454 -0.7351 -1.2138 5 7 1.7104 -0.5812 -2.4575 6 7 2.3916 -1.3956 -3.1890 7 6 3.1900 -2.1055 -2.4341 8 7 2.9891 -1.7092 -1.1614 9 6 3.6288 -2.1995 0.0585 10 6 3.4352 -1.1694 1.1777 11 7 2.0354 -0.7180 1.1854 12 6 1.2367 -0.9550 2.2449 13 8 0.0607 -0.6624 2.1952 14 6 1.8048 -1.5834 3.4912 15 1 2.2178 -2.5626 3.2486 16 6 2.8941 -0.7023 4.0464 17 1 3.8852 -1.1022 4.2021 18 6 2.6253 0.6142 4.3555 19 7 1.4912 1.1606 3.9751 20 14 3.8722 1.6216 5.3145 21 1 5.0570 0.7807 5.6218 22 1 4.2924 2.7921 4.5029 23 1 3.2582 2.0929 6.5819 24 6 0.7125 -1.7399 4.5176 25 6 0.9321 -1.3499 5.8255 26 6 -0.0714 -1.4889 6.7660 27 6 -1.2910 -2.0275 6.4008 28 6 -1.5089 -2.4223 5.0941 29 6 -0.5071 -2.2785 4.1524 30 1 -0.3633 -1.0164 0.1515 31 1 -0.3634 0.6394 0.8045 32 1 -0.3633 0.3771 -0.9560 33 1 3.8800 -2.8664 -2.7676 34 1 4.6938 -2.3454 -0.1219 35 1 3.1752 -3.1461 0.3524 36 1 3.6759 -1.6255 2.1380 37 1 4.0917 -0.3166 1.0050 38 1 1.3021 2.0868 4.1929 39 1 1.8866 -0.9335 6.1118 40 1 0.0988 -1.1808 7.7869 41 1 -2.0736 -2.1402 7.1366 42 1 -2.4616 -2.8435 4.8089 43 1 -0.6770 -2.5876 3.1317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361796280.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:20 Heat of formation + Delta-G solvation = 99.516479 kcal Electronic energy + Delta-G solvation = -28947.618261 eV Core-core repulsion = 25188.277556 eV Total energy + Delta-G solvation = -3759.340705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.07707 -39.55439 -37.98549 -36.14231 -34.29631 -33.81608 -31.92598 -30.90121 -29.85558 -29.70329 -28.30642 -27.22217 -24.61095 -23.80254 -23.23538 -22.05919 -21.42152 -20.90299 -19.91478 -18.21037 -17.44307 -16.80192 -16.39088 -15.79309 -15.44650 -15.43661 -14.96298 -14.79371 -14.46769 -14.09892 -13.90441 -13.76742 -12.98495 -12.95913 -12.60253 -12.35131 -12.19085 -12.00362 -11.86604 -11.70800 -11.53932 -11.41663 -11.16044 -11.09217 -10.97631 -10.83653 -10.48009 -10.25505 -10.16557 -9.99304 -9.85695 -9.54358 -9.06107 -8.82661 -8.13144 -8.02494 -7.80101 -7.55532 -6.34376 -4.45719 1.99521 2.38002 2.44920 2.59866 3.04879 3.08299 3.19656 3.20973 3.56259 3.91907 4.17106 4.41470 4.56355 4.66428 4.83516 4.95758 5.01233 5.08077 5.34463 5.63610 5.70759 5.73840 5.75508 5.84101 5.91931 5.97509 6.12708 6.13308 6.25183 6.27139 6.34705 6.52569 6.55423 6.61361 6.68245 6.92693 6.97053 6.99771 7.05458 7.22147 7.41002 7.48043 7.51121 7.59827 7.97844 8.08752 8.26115 8.55804 8.89127 9.19683 9.44832 10.68323 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014052 B = 0.005085 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.184455 B = 5505.314737 C = 6531.803131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.238 3.762 3 H 0.090 0.910 4 C 0.181 3.819 5 N -0.292 5.292 6 N -0.307 5.307 7 C 0.142 3.858 8 N -0.468 5.468 9 C 0.082 3.918 10 C 0.104 3.896 11 N -0.617 5.617 12 C 0.564 3.436 13 O -0.527 6.527 14 C 0.058 3.942 15 H 0.055 0.945 16 C -0.548 4.548 17 H 0.070 0.930 18 C 0.081 3.919 19 N -0.836 5.836 20 Si 0.881 3.119 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.280 1.280 24 C -0.021 4.021 25 C -0.075 4.075 26 C -0.146 4.146 27 C -0.142 4.142 28 C -0.141 4.141 29 C -0.099 4.099 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.215 0.785 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.071 0.929 38 H 0.268 0.732 39 H 0.129 0.871 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.848 -6.905 -2.065 8.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.132 3.868 3 H 0.107 0.893 4 C -0.088 4.088 5 N -0.132 5.132 6 N -0.147 5.147 7 C -0.146 4.146 8 N -0.158 5.158 9 C -0.042 4.042 10 C -0.020 4.020 11 N -0.353 5.353 12 C 0.356 3.644 13 O -0.402 6.402 14 C 0.037 3.963 15 H 0.073 0.927 16 C -0.585 4.585 17 H 0.088 0.912 18 C -0.128 4.128 19 N -0.468 5.468 20 Si 0.708 3.292 21 H -0.194 1.194 22 H -0.210 1.210 23 H -0.205 1.205 24 C -0.021 4.021 25 C -0.092 4.092 26 C -0.164 4.164 27 C -0.161 4.161 28 C -0.159 4.159 29 C -0.117 4.117 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.232 0.768 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.153 0.847 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.146 0.854 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.373 -6.056 -3.286 7.672 hybrid contribution 1.525 0.286 1.543 2.189 sum 4.898 -5.770 -1.743 7.767 Atomic orbital electron populations 1.22035 0.90283 1.04057 1.01641 1.19628 0.96619 0.93192 0.77403 0.89262 1.25482 0.92567 0.93308 0.97492 1.74007 1.20940 1.19015 0.99223 1.74432 1.07346 1.06342 1.26573 1.26225 1.03919 1.03735 0.80687 1.46193 1.31549 1.29478 1.08620 1.22722 0.98635 1.00106 0.82735 1.22036 0.84312 0.96671 0.99000 1.48056 1.11265 1.59567 1.16435 1.21042 0.84910 0.76354 0.82091 1.90573 1.16981 1.51871 1.80786 1.17924 0.93596 0.95829 0.88931 0.92693 1.20651 0.95838 0.95064 1.46907 0.91182 1.24999 0.95253 0.97679 0.94886 1.69984 1.22481 1.13565 1.40752 0.86697 0.81674 0.80404 0.80410 1.19359 1.20963 1.20537 1.19821 0.93998 0.93811 0.94515 1.21195 0.99023 0.96391 0.92633 1.21023 0.94426 1.02040 0.98917 1.20815 0.97079 1.02120 0.96038 1.20859 0.98562 1.02812 0.93714 1.20984 0.93512 0.99188 0.98005 0.92213 0.88563 0.93384 0.76826 0.88101 0.89187 0.84670 0.91104 0.92185 0.85359 0.87884 0.88043 0.87937 0.87408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 7.68 37.16 0.29 -2.02 16 2 C 0.24 4.30 3.84 -68.39 -0.26 4.03 16 3 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 4 C 0.18 3.12 7.17 -155.30 -1.11 2.00 16 5 N -0.29 -5.50 12.16 32.78 0.40 -5.10 16 6 N -0.31 -5.31 12.23 29.60 0.36 -4.94 16 7 C 0.14 1.88 12.81 -90.33 -1.16 0.72 16 8 N -0.47 -6.57 3.11 -115.48 -0.36 -6.93 16 9 C 0.08 0.90 7.18 -4.02 -0.03 0.87 16 10 C 0.10 1.48 5.78 -3.55 -0.02 1.46 16 11 N -0.62 -11.14 2.96 -165.83 -0.49 -11.64 16 12 C 0.56 11.79 5.00 -10.99 -0.05 11.74 16 13 O -0.53 -12.35 9.75 5.55 0.05 -12.30 16 14 C 0.06 1.20 1.97 -94.07 -0.19 1.01 16 15 H 0.06 1.01 7.68 -51.93 -0.40 0.61 16 16 C -0.55 -11.55 5.19 -34.44 -0.18 -11.73 16 17 H 0.07 1.41 7.66 -52.49 -0.40 1.01 16 18 C 0.08 1.84 3.79 -17.82 -0.07 1.77 16 19 N -0.84 -20.75 11.24 55.43 0.62 -20.13 16 20 Si 0.88 18.16 29.55 -169.99 -5.02 13.14 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 C -0.02 -0.44 4.69 -104.62 -0.49 -0.93 16 25 C -0.07 -1.58 8.53 -39.58 -0.34 -1.92 16 26 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 27 C -0.14 -2.61 10.05 -39.58 -0.40 -3.01 16 28 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16 29 C -0.10 -2.04 8.21 -39.58 -0.32 -2.37 16 30 H 0.06 1.19 7.19 -51.93 -0.37 0.82 16 31 H 0.10 2.03 6.57 -51.93 -0.34 1.69 16 32 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.22 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.14 1.92 4.79 -51.93 -0.25 1.68 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 39 H 0.13 2.79 6.01 -52.48 -0.32 2.47 16 40 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 41 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.11 2.22 7.01 -52.49 -0.37 1.86 16 LS Contribution 342.44 15.07 5.16 5.16 Total: -1.00 -29.29 342.44 -9.79 -39.08 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.39 Total: 8.32 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -5.13 Total: -4.67 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.53 Total: -48.74 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.05 Total: -12.30 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.14 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.29 -9.79 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361796280.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.595 kcal (2) G-P(sol) polarization free energy of solvation -29.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds