Wall clock time and date at job start Tue Mar 31 2020 15:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46753 * 2 1 4 4 N 1.46501 * 109.47244 * 120.00107 * 2 1 3 5 5 C 1.34773 * 119.99407 * 275.00100 * 4 2 1 6 6 O 1.21275 * 120.00765 * 0.02562 * 5 4 2 7 7 C 1.50710 * 119.99612 * 179.97438 * 5 4 2 8 8 H 1.08991 * 109.47549 * 300.00314 * 7 5 4 9 9 C 1.50706 * 109.46799 * 60.00183 * 7 5 4 10 10 H 1.08001 * 120.00014 * 33.92849 * 9 7 5 11 11 C 1.37876 * 120.00020 * 213.92906 * 9 7 5 12 12 N 1.31510 * 119.99980 * 6.38522 * 11 9 7 13 13 Si 1.86800 * 120.00042 * 186.39085 * 11 9 7 14 14 H 1.48500 * 109.46955 * 89.99608 * 13 11 9 15 15 H 1.48499 * 109.47195 * 209.99489 * 13 11 9 16 16 H 1.48503 * 109.47008 * 329.99954 * 13 11 9 17 17 C 1.50695 * 109.47298 * 179.97438 * 7 5 4 18 18 C 1.38233 * 120.00519 * 293.85543 * 17 7 5 19 19 C 1.38231 * 120.00515 * 179.78638 * 18 17 7 20 20 C 1.38235 * 119.99622 * 0.43763 * 19 18 17 21 21 C 1.38233 * 120.00273 * 359.81307 * 20 19 18 22 22 C 1.38237 * 119.99866 * 114.11916 * 17 7 5 23 23 C 1.50698 * 109.46979 * 240.00222 * 2 1 3 24 24 N 1.31795 * 119.08055 * 284.99753 * 23 2 1 25 25 C 1.32556 * 121.00813 * 180.02562 * 24 23 2 26 26 C 1.38118 * 119.19866 * 359.97438 * 25 24 23 27 27 C 1.39625 * 118.33226 * 0.27671 * 26 25 24 28 28 N 1.38548 * 120.52970 * 179.72741 * 27 26 25 29 29 N 1.31747 * 119.08933 * 104.97751 * 23 2 1 30 30 H 1.09001 * 109.47341 * 60.00209 * 1 2 3 31 31 H 1.09001 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47431 * 299.99916 * 1 2 3 33 33 H 0.96997 * 120.00096 * 94.99518 * 4 2 1 34 34 H 0.96999 * 120.00315 * 180.02562 * 12 11 9 35 35 H 1.08007 * 119.99625 * 359.97438 * 18 17 7 36 36 H 1.08005 * 120.00602 * 180.27183 * 19 18 17 37 37 H 1.08004 * 119.99838 * 179.83470 * 20 19 18 38 38 H 1.07998 * 120.00409 * 180.02562 * 21 20 19 39 39 H 1.08004 * 119.99872 * 359.97438 * 22 17 7 40 40 H 1.07995 * 120.39896 * 179.97438 * 25 24 23 41 41 H 1.07999 * 120.83207 * 180.02562 * 26 25 24 42 42 H 0.97005 * 119.99623 * 359.97438 * 28 27 26 43 43 H 0.97000 * 120.00112 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3570 6 8 1.8581 1.1584 2.4117 7 6 2.6488 -0.7288 3.5877 8 1 1.9761 -1.5506 3.8326 9 6 4.0303 -1.2714 3.3262 10 1 4.7108 -0.7301 2.6856 11 6 4.4254 -2.4589 3.9047 12 7 3.5591 -3.1811 4.5811 13 14 6.1912 -3.0421 3.7276 14 1 7.0028 -2.5114 4.8523 15 1 6.2268 -4.5265 3.7488 16 1 6.7478 -2.5518 2.4411 17 6 2.7002 0.2397 4.7411 18 6 3.5871 1.2997 4.7147 19 6 3.6312 2.1906 5.7707 20 6 2.7946 2.0163 6.8573 21 6 1.9113 0.9534 6.8862 22 6 1.8642 0.0650 5.8281 23 6 2.0323 -0.7104 -1.2305 24 7 1.9648 -2.0255 -1.2833 25 6 2.3959 -2.6893 -2.3466 26 6 2.9223 -1.9857 -3.4123 27 6 2.9842 -0.5938 -3.3217 28 7 3.5088 0.1566 -4.3615 29 7 2.5263 0.0005 -2.2236 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2490 -1.6318 1.1526 34 1 3.8371 -4.0163 4.9885 35 1 4.2436 1.4335 3.8676 36 1 4.3210 3.0213 5.7482 37 1 2.8309 2.7108 7.6836 38 1 1.2574 0.8174 7.7349 39 1 1.1740 -0.7654 5.8505 40 1 2.3363 -3.7671 -2.3793 41 1 3.2810 -2.4997 -4.2918 42 1 3.8372 -0.2848 -5.1605 43 1 3.5484 1.1231 -4.2903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434027607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:16 Heat of formation + Delta-G solvation = 32.929946 kcal Electronic energy + Delta-G solvation = -27130.507918 eV Core-core repulsion = 23368.279805 eV Total energy + Delta-G solvation = -3762.228114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00307 -39.09758 -37.76748 -35.99800 -34.62203 -33.58311 -32.69140 -31.08238 -30.53751 -29.88891 -29.49635 -27.14886 -24.93094 -23.83596 -23.76957 -21.80774 -21.52145 -20.40704 -19.25343 -18.13947 -17.67798 -16.70300 -16.06878 -15.96198 -15.73123 -15.35853 -15.26479 -14.84070 -14.52968 -14.19410 -14.06444 -13.74768 -13.60754 -13.25469 -12.75653 -12.56627 -12.35960 -12.29426 -11.90372 -11.72292 -11.59664 -11.42071 -11.12721 -11.02518 -10.94960 -10.62042 -10.35014 -10.22263 -10.00989 -9.92711 -9.38352 -9.17632 -8.72966 -8.57745 -8.47438 -8.29883 -7.89851 -7.56506 -6.22297 -4.26558 0.99768 1.38620 2.42222 2.45118 3.09947 3.23760 3.30635 3.32783 3.72672 3.86328 4.02465 4.13044 4.34112 4.52257 4.81832 4.89272 5.12476 5.15546 5.27840 5.49622 5.58947 5.65302 5.76329 5.83283 5.88287 5.95248 6.14943 6.24585 6.27794 6.41741 6.49728 6.55982 6.65566 6.78510 6.93044 6.98997 7.02776 7.22728 7.30380 7.41563 7.49472 7.51223 7.68625 7.82022 8.01064 8.13323 8.31494 8.51582 8.77364 9.31643 9.39411 10.86525 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.004035 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.909828 B = 6937.312856 C = 8235.773565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.213 3.787 3 H 0.106 0.894 4 N -0.716 5.716 5 C 0.531 3.469 6 O -0.568 6.568 7 C 0.050 3.950 8 H 0.094 0.906 9 C -0.513 4.513 10 H 0.061 0.939 11 C 0.076 3.924 12 N -0.878 5.878 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.010 4.010 18 C -0.084 4.084 19 C -0.135 4.135 20 C -0.149 4.149 21 C -0.132 4.132 22 C -0.120 4.120 23 C 0.367 3.633 24 N -0.544 5.544 25 C 0.181 3.819 26 C -0.301 4.301 27 C 0.438 3.562 28 N -0.839 5.839 29 N -0.571 5.571 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.414 0.586 34 H 0.267 0.733 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.167 0.833 41 H 0.139 0.861 42 H 0.410 0.590 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 1.897 -13.637 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.105 3.895 3 H 0.124 0.876 4 N -0.370 5.370 5 C 0.321 3.679 6 O -0.447 6.447 7 C 0.029 3.971 8 H 0.111 0.889 9 C -0.550 4.550 10 H 0.079 0.921 11 C -0.128 4.128 12 N -0.514 5.514 13 Si 0.723 3.277 14 H -0.203 1.203 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.011 4.011 18 C -0.102 4.102 19 C -0.153 4.153 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.138 4.138 23 C 0.098 3.902 24 N -0.263 5.263 25 C 0.019 3.981 26 C -0.329 4.329 27 C 0.192 3.808 28 N -0.384 5.384 29 N -0.295 5.295 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.250 0.750 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.184 0.816 41 H 0.157 0.843 42 H 0.240 0.760 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.997 2.965 -12.692 13.374 hybrid contribution 1.763 -1.154 -1.273 2.462 sum -1.234 1.811 -13.965 14.136 Atomic orbital electron populations 1.22115 0.93796 1.02760 1.02504 1.19352 0.94136 0.96284 0.79745 0.87617 1.45922 1.68177 1.15020 1.07885 1.21639 0.74401 0.86770 0.85092 1.90575 1.51490 1.16851 1.85751 1.18125 0.99449 0.93523 0.86027 0.88860 1.20657 0.97039 1.06363 1.30984 0.92123 1.24921 0.97569 0.95908 0.94429 1.69874 1.33879 1.13811 1.33831 0.86531 0.84703 0.77744 0.78759 1.20327 1.21029 1.19814 1.20053 0.92127 0.93241 0.95689 1.20831 0.97967 0.94073 0.97361 1.20953 0.99882 0.99550 0.94904 1.20792 0.98570 0.98935 0.98434 1.20898 0.99676 0.96039 0.98420 1.21007 0.99607 0.98865 0.94319 1.22982 0.87906 0.86679 0.92655 1.68198 1.21647 1.09289 1.27118 1.22940 0.87757 1.00663 0.86789 1.22092 1.13089 0.93691 1.04035 1.18495 0.86859 0.88476 0.87009 1.42149 1.68369 1.10060 1.17780 1.67705 1.18430 1.41518 1.01870 0.92379 0.91711 0.90761 0.74967 0.92360 0.87117 0.87634 0.87760 0.87574 0.86935 0.81585 0.84302 0.75983 0.76324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.47 37.16 0.35 -2.00 16 2 C 0.21 3.75 2.97 -69.08 -0.21 3.54 16 3 H 0.11 2.01 7.55 -51.93 -0.39 1.62 16 4 N -0.72 -14.39 4.95 -54.93 -0.27 -14.66 16 5 C 0.53 12.17 7.01 -10.98 -0.08 12.10 16 6 O -0.57 -13.90 15.09 5.56 0.08 -13.82 16 7 C 0.05 1.21 2.45 -94.07 -0.23 0.98 16 8 H 0.09 2.40 7.00 -51.93 -0.36 2.04 16 9 C -0.51 -13.20 7.46 -34.44 -0.26 -13.46 16 10 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 11 C 0.08 1.99 5.45 -17.82 -0.10 1.89 16 12 N -0.88 -23.52 12.78 55.43 0.71 -22.81 16 13 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 17 C -0.01 -0.24 4.30 -104.63 -0.45 -0.69 16 18 C -0.08 -1.93 8.31 -39.59 -0.33 -2.26 16 19 C -0.13 -2.71 10.05 -39.59 -0.40 -3.11 16 20 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 21 C -0.13 -2.59 10.05 -39.58 -0.40 -2.99 16 22 C -0.12 -2.66 9.67 -39.58 -0.38 -3.04 16 23 C 0.37 6.05 6.58 -157.24 -1.03 5.01 16 24 N -0.54 -8.48 9.60 -10.81 -0.10 -8.58 16 25 C 0.18 2.20 11.29 -17.28 -0.20 2.00 16 26 C -0.30 -3.20 10.04 -39.11 -0.39 -3.59 16 27 C 0.44 5.32 7.82 -154.78 -1.21 4.11 16 28 N -0.84 -6.63 9.06 31.24 0.28 -6.35 16 29 N -0.57 -8.76 10.35 -9.96 -0.10 -8.86 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.41 8.46 7.90 -40.82 -0.32 8.14 16 34 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.11 2.58 7.89 -52.48 -0.41 2.17 16 36 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 37 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.11 2.40 7.96 -52.48 -0.42 1.98 16 40 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.41 1.92 8.84 -40.82 -0.36 1.55 16 43 H 0.41 2.96 8.95 -40.82 -0.37 2.60 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -31.49 372.59 -10.08 -41.56 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -5.56 Total: 17.10 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -5.70 Total: -4.73 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.51 Total: -61.27 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.49 -10.08 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434027607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.493 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds