Wall clock time and date at job start Tue Mar 31 2020 14:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 115.54585 * 2 1 4 4 C 1.53000 * 117.49542 * 145.69797 * 2 1 3 5 5 C 1.52998 * 117.50158 * 214.32362 * 2 1 3 6 6 H 1.08998 * 117.49954 * 0.02562 * 5 2 1 7 7 C 1.52998 * 117.49888 * 145.02360 * 5 2 1 8 8 C 1.50703 * 109.47243 * 184.99944 * 7 5 2 9 9 O 1.21281 * 119.99538 * 359.97438 * 8 7 5 10 10 N 1.34769 * 119.99988 * 180.02562 * 8 7 5 11 11 C 1.47584 * 134.49063 * 180.02562 * 10 8 7 12 12 C 1.53947 * 86.11565 * 204.63541 * 11 10 8 13 13 C 1.52996 * 113.74035 * 222.04381 * 12 11 10 14 14 N 1.46505 * 109.47093 * 185.00064 * 13 12 11 15 15 C 1.34774 * 120.00058 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00026 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99936 * 179.97438 * 15 14 13 18 18 S 1.80997 * 109.46997 * 179.97438 * 17 15 14 19 19 C 1.76207 * 100.00100 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99454 * 0.02562 * 19 18 17 21 21 C 1.38793 * 119.99953 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00561 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99764 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47178 * 90.00309 * 23 21 19 25 25 H 1.48502 * 109.47263 * 210.00797 * 23 21 19 26 26 H 1.48503 * 109.47217 * 330.00420 * 23 21 19 27 27 C 1.47577 * 134.49641 * 359.97438 * 10 8 7 28 28 H 1.09004 * 109.47318 * 205.66986 * 1 2 3 29 29 H 1.08994 * 109.47530 * 325.67673 * 1 2 3 30 30 H 1.09008 * 109.46738 * 85.67650 * 1 2 3 31 31 H 1.08994 * 117.50096 * 0.02562 * 4 2 1 32 32 H 1.09004 * 117.49423 * 214.98031 * 4 2 1 33 33 H 1.08997 * 109.46893 * 64.99710 * 7 5 2 34 34 H 1.09001 * 109.46907 * 304.99617 * 7 5 2 35 35 H 1.09001 * 113.76908 * 90.33461 * 11 10 8 36 36 H 1.08997 * 113.76763 * 318.93723 * 11 10 8 37 37 H 1.08997 * 113.73914 * 90.73986 * 12 11 10 38 38 H 1.09002 * 109.47563 * 305.00428 * 13 12 11 39 39 H 1.09001 * 109.46981 * 65.00661 * 13 12 11 40 40 H 0.96999 * 119.99597 * 0.02562 * 14 13 12 41 41 H 1.08993 * 109.47442 * 300.00125 * 17 15 14 42 42 H 1.09001 * 109.46774 * 60.00217 * 17 15 14 43 43 H 0.96993 * 120.00578 * 179.97438 * 22 21 19 44 44 H 1.08995 * 113.76947 * 41.05826 * 27 10 8 45 45 H 1.09005 * 113.76708 * 269.66738 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2364 -1.1211 0.7648 5 6 2.2365 -1.1208 -0.7652 6 1 1.6113 -1.8579 -1.2690 7 6 3.5491 -0.7755 -1.4715 8 6 4.0219 -1.9672 -2.2636 9 8 3.3731 -2.9919 -2.2629 10 7 5.1661 -1.8945 -2.9720 11 6 5.9093 -2.8327 -3.8355 12 6 7.1559 -1.9974 -3.4918 13 6 8.0718 -1.7364 -4.6893 14 7 9.2800 -1.0416 -4.2378 15 6 10.2362 -0.7061 -5.1263 16 8 10.0963 -0.9790 -6.2997 17 6 11.4787 0.0091 -4.6619 18 16 12.5622 0.3177 -6.0785 19 6 13.8954 1.1395 -5.2708 20 1 13.8602 1.3059 -4.2042 21 6 14.9909 1.5719 -6.0050 22 7 15.0340 1.3686 -7.3048 23 14 16.4045 2.4424 -5.1486 24 1 17.4086 1.4409 -4.7081 25 1 17.0397 3.3994 -6.0899 26 1 15.8889 3.1792 -3.9668 27 6 6.1787 -0.8447 -3.1965 28 1 -0.3634 -0.9263 0.4452 29 1 -0.3634 0.8486 0.5794 30 1 -0.3633 0.0775 -1.0248 31 1 1.6112 -1.8589 1.2676 32 1 3.1715 -0.8753 1.2682 33 1 4.3021 -0.5105 -0.7294 34 1 3.3891 0.0674 -2.1438 35 1 5.6233 -2.7833 -4.8861 36 1 5.9433 -3.8517 -3.4500 37 1 7.6940 -2.3532 -2.6133 38 1 8.3486 -2.6853 -5.1487 39 1 7.5486 -1.1184 -5.4190 40 1 9.3916 -0.8231 -3.2993 41 1 11.2016 0.9579 -4.2025 42 1 12.0022 -0.6087 -3.9323 43 1 15.7994 1.6711 -7.8180 44 1 6.4278 -0.2759 -2.3007 45 1 5.9717 -0.2121 -4.0597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498474874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:18 Heat of formation + Delta-G solvation = -25.165488 kcal Electronic energy + Delta-G solvation = -23726.667428 eV Core-core repulsion = 20065.071308 eV Total energy + Delta-G solvation = -3661.596121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.84899 -39.33029 -38.67903 -37.57028 -34.53980 -32.45610 -31.70545 -30.53485 -29.14239 -27.86929 -26.63760 -25.72230 -25.28693 -21.99303 -21.16414 -20.69120 -20.30986 -19.32591 -17.91669 -17.35891 -16.77461 -16.55058 -16.25277 -15.71454 -15.45009 -15.05222 -14.83394 -14.77220 -14.37602 -13.98789 -13.66595 -13.62241 -13.28707 -13.15462 -13.09982 -12.83004 -12.64416 -12.59914 -12.36889 -11.88972 -11.81431 -11.74110 -11.70968 -11.22746 -11.08679 -11.05212 -10.78720 -10.43201 -10.31861 -9.99925 -9.84327 -9.47331 -9.11615 -9.09933 -8.97302 -8.26964 -6.53192 -6.24317 -3.95250 2.25345 2.38042 2.96201 3.03714 3.20347 3.25362 3.28887 3.31044 3.58976 3.93845 3.94535 4.17786 4.21660 4.36593 4.42883 4.52315 4.63741 4.78105 4.83771 4.90734 4.92632 5.00126 5.04824 5.10990 5.11932 5.17634 5.20590 5.34662 5.36007 5.37576 5.42635 5.51455 5.55184 5.60664 5.65999 5.80421 5.83668 5.85555 5.94433 6.09687 6.51427 7.27878 7.56743 7.62114 7.79649 8.32402 8.54513 9.21093 10.83092 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023910 B = 0.001657 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.771604 B =16897.970967 C =17711.693806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.153 4.153 3 H 0.104 0.896 4 C -0.173 4.173 5 C -0.139 4.139 6 H 0.118 0.882 7 C -0.104 4.104 8 C 0.538 3.462 9 O -0.539 6.539 10 N -0.649 5.649 11 C 0.117 3.883 12 C -0.134 4.134 13 C 0.130 3.870 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.104 3.896 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.085 0.915 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.538 -3.358 15.340 29.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.172 4.172 3 H 0.122 0.878 4 C -0.210 4.210 5 C -0.157 4.157 6 H 0.136 0.864 7 C -0.144 4.144 8 C 0.329 3.671 9 O -0.416 6.416 10 N -0.385 5.385 11 C -0.006 4.006 12 C -0.153 4.153 13 C 0.006 3.994 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.018 4.018 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.234 -4.358 13.320 28.865 hybrid contribution 1.226 1.055 2.348 2.851 sum -24.008 -3.303 15.668 28.858 Atomic orbital electron populations 1.21364 0.92690 1.02005 1.01979 1.22437 0.95488 0.94495 1.04742 0.87792 1.23217 1.02593 1.01269 0.93938 1.22172 0.97588 1.02046 0.93940 0.86429 1.21160 0.97119 0.96570 0.99537 1.20301 0.78135 0.89705 0.78995 1.90704 1.54245 1.32338 1.64279 1.50023 1.22977 1.17447 1.48081 1.23127 0.86434 0.95496 0.95544 1.23432 0.95001 0.96976 0.99936 1.21213 0.85143 0.98087 0.94996 1.45979 1.19977 1.61992 1.11477 1.20319 0.83727 0.78324 0.85845 1.90714 1.78387 1.52845 1.17091 1.23529 0.97607 1.02342 1.06957 1.85414 1.16098 1.75691 1.06199 1.22866 1.05394 1.43700 0.96512 0.90915 1.24986 0.98006 0.95662 0.94876 1.70010 1.30390 1.44204 1.05647 0.86172 0.81092 0.79159 0.79090 1.20263 1.20741 1.19711 1.23434 0.84191 0.92206 1.02011 0.92478 0.92095 0.92123 0.88680 0.88861 0.88832 0.88513 0.89114 0.89573 0.87165 0.90796 0.90975 0.76765 0.89194 0.89208 0.92155 0.89633 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.19 37.16 0.38 -0.29 16 2 C -0.15 -0.93 6.13 -90.62 -0.56 -1.48 16 3 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.17 -1.14 9.82 -26.73 -0.26 -1.40 16 5 C -0.14 -1.06 5.13 -90.62 -0.47 -1.52 16 6 H 0.12 1.13 7.31 -51.93 -0.38 0.75 16 7 C -0.10 -0.71 5.73 -27.88 -0.16 -0.87 16 8 C 0.54 5.34 8.06 -10.99 -0.09 5.25 16 9 O -0.54 -7.49 16.29 5.56 0.09 -7.40 16 10 N -0.65 -5.21 3.61 -178.34 -0.64 -5.85 16 11 C 0.12 0.84 8.40 -2.97 -0.02 0.82 16 12 C -0.13 -0.82 3.94 -89.68 -0.35 -1.17 16 13 C 0.13 1.17 5.53 -4.04 -0.02 1.15 16 14 N -0.74 -8.19 5.56 -60.29 -0.33 -8.52 16 15 C 0.53 9.09 7.85 -10.99 -0.09 9.01 16 16 O -0.52 -11.07 15.86 5.55 0.09 -10.99 16 17 C -0.15 -2.91 6.16 36.00 0.22 -2.69 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.77 13.22 55.49 0.73 -25.03 16 23 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 C 0.10 0.58 8.17 -2.96 -0.02 0.55 16 28 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 31 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 32 H 0.09 0.54 8.03 -51.93 -0.42 0.12 16 33 H 0.09 0.50 7.87 -51.93 -0.41 0.09 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.61 8.10 -51.93 -0.42 0.18 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 40 H 0.40 3.19 8.47 -40.82 -0.35 2.85 16 41 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 42 H 0.09 1.57 8.14 -51.91 -0.42 1.14 16 43 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.09 0.49 7.89 -51.93 -0.41 0.08 16 LS Contribution 395.07 15.07 5.95 5.95 Total: -1.00 -36.48 395.07 -9.98 -46.46 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -7.39 Total: -1.47 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.24 Total: -5.33 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: -0.24 Total: -39.41 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.18 Total: -18.39 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.48 -9.98 -46.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498474874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.299 kcal (2) G-P(sol) polarization free energy of solvation -36.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds