Wall clock time and date at job start Tue Mar 31 2020 14:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 115.55067 * 2 1 4 4 C 1.52999 * 117.51737 * 214.30034 * 2 1 3 5 5 C 1.53005 * 117.49765 * 145.67013 * 2 1 3 6 6 H 1.09004 * 117.49360 * 215.00124 * 5 2 1 7 7 C 1.52992 * 117.50124 * 0.02562 * 5 2 1 8 8 C 1.50699 * 109.47309 * 185.00331 * 7 5 2 9 9 O 1.21279 * 119.99936 * 359.97438 * 8 7 5 10 10 N 1.34775 * 120.00209 * 179.97438 * 8 7 5 11 11 C 1.47067 * 136.05444 * 359.62996 * 10 8 7 12 12 C 1.53243 * 88.08288 * 207.19901 * 11 10 8 13 13 C 1.52993 * 114.32922 * 220.46942 * 12 11 10 14 14 N 1.46496 * 109.47274 * 268.75740 * 13 12 11 15 15 C 1.34778 * 120.00383 * 179.97438 * 14 13 12 16 16 O 1.21284 * 119.99707 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00320 * 179.97438 * 15 14 13 18 18 S 1.80996 * 109.47336 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00108 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99949 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99599 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00084 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47080 * 90.00339 * 23 21 19 25 25 H 1.48500 * 109.47186 * 210.00148 * 23 21 19 26 26 H 1.48499 * 109.47438 * 330.00459 * 23 21 19 27 27 C 1.47063 * 136.05718 * 179.97438 * 10 8 7 28 28 H 1.08996 * 109.46543 * 274.41652 * 1 2 3 29 29 H 1.08999 * 109.47163 * 34.41886 * 1 2 3 30 30 H 1.09000 * 109.46851 * 154.42084 * 1 2 3 31 31 H 1.09003 * 117.50034 * 0.02562 * 4 2 1 32 32 H 1.08995 * 117.49797 * 145.02727 * 4 2 1 33 33 H 1.09005 * 109.47055 * 305.00042 * 7 5 2 34 34 H 1.09001 * 109.47416 * 64.99321 * 7 5 2 35 35 H 1.09000 * 113.47031 * 321.93184 * 11 10 8 36 36 H 1.09006 * 113.47058 * 92.37227 * 11 10 8 37 37 H 1.08995 * 114.19528 * 87.72226 * 12 11 10 38 38 H 1.08996 * 109.47152 * 28.75901 * 13 12 11 39 39 H 1.09001 * 109.47199 * 148.75466 * 13 12 11 40 40 H 0.97004 * 119.99765 * 359.97438 * 14 13 12 41 41 H 1.09001 * 109.47079 * 300.00872 * 17 15 14 42 42 H 1.09001 * 109.46640 * 60.00297 * 17 15 14 43 43 H 0.97005 * 119.99524 * 179.97438 * 22 21 19 44 44 H 1.09002 * 113.47196 * 267.62666 * 27 10 8 45 45 H 1.09000 * 113.46761 * 38.01318 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7647 5 6 2.2365 -1.1208 0.7654 6 1 3.1714 -0.8746 1.2689 7 6 1.3589 -2.1560 1.4717 8 6 2.2301 -3.0964 2.2640 9 8 3.4344 -2.9529 2.2634 10 7 1.6710 -4.0968 2.9733 11 6 0.3055 -4.5808 3.2262 12 6 0.8051 -5.1349 4.5648 13 6 0.2409 -6.5099 4.9278 14 7 -0.9832 -6.3431 5.7152 15 6 -1.6583 -7.4259 6.1490 16 8 -1.2522 -8.5385 5.8878 17 6 -2.9171 -7.2543 6.9595 18 16 -3.5847 -8.8809 7.3889 19 6 -5.0091 -8.3949 8.3052 20 1 -5.2289 -7.3470 8.4461 21 6 -5.8493 -9.3590 8.8449 22 7 -5.5817 -10.6362 8.6727 23 14 -7.3597 -8.8438 9.8157 24 1 -8.5169 -8.7071 8.8951 25 1 -7.6629 -9.8728 10.8425 26 1 -7.1002 -7.5418 10.4812 27 6 2.1574 -5.1810 3.8396 28 1 -0.3632 0.0791 1.0246 29 1 -0.3633 0.8477 -0.5809 30 1 -0.3633 -0.9270 -0.4437 31 1 1.6120 -1.8585 -1.2683 32 1 3.1721 -0.8750 -1.2677 33 1 0.6673 -1.6481 2.1439 34 1 0.7950 -2.7213 0.7296 35 1 -0.4257 -3.7799 3.3354 36 1 -0.0169 -5.3545 2.5293 37 1 0.7630 -4.4210 5.3874 38 1 0.0137 -7.0617 4.0157 39 1 0.9768 -7.0617 5.5126 40 1 -1.3078 -5.4532 5.9245 41 1 -2.6895 -6.7029 7.8718 42 1 -3.6530 -6.7019 6.3751 43 1 -6.1687 -11.3099 9.0503 44 1 2.3331 -6.1161 3.3078 45 1 2.9986 -4.8897 4.4687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498474880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:27 Heat of formation + Delta-G solvation = -20.799117 kcal Electronic energy + Delta-G solvation = -23865.053065 eV Core-core repulsion = 20203.646284 eV Total energy + Delta-G solvation = -3661.406781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98168 -39.37984 -38.78358 -37.63905 -34.56539 -32.45428 -31.59405 -30.26845 -29.12060 -28.36720 -26.47644 -25.79311 -25.33504 -22.11414 -21.41023 -20.54433 -19.97043 -19.18073 -17.93995 -17.54608 -16.81781 -16.57304 -16.29140 -15.75305 -15.47188 -15.15175 -14.82953 -14.66265 -14.29733 -14.01204 -13.93582 -13.53966 -13.31744 -13.13698 -13.09623 -12.88512 -12.64883 -12.52640 -12.41595 -11.97427 -11.85276 -11.74275 -11.65657 -11.09033 -11.05897 -11.04703 -10.78533 -10.36517 -10.33426 -10.07761 -9.84400 -9.47802 -9.13657 -9.09852 -8.97249 -8.26888 -6.53112 -6.24316 -3.95114 2.24206 2.38277 2.96324 3.03620 3.20314 3.25321 3.28921 3.30863 3.57890 3.89851 3.98553 4.17856 4.18177 4.36656 4.42108 4.47921 4.61236 4.77182 4.83769 4.88342 4.95243 4.99896 5.04212 5.10947 5.12039 5.15206 5.21607 5.31843 5.33987 5.36687 5.44136 5.50853 5.54318 5.59716 5.65491 5.82155 5.83636 5.85501 5.88378 6.09802 6.51438 7.30216 7.56865 7.62074 7.78011 8.32489 8.54428 9.21112 10.83074 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.001731 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.763898 B =16176.380300 C =17151.539477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.153 4.153 3 H 0.105 0.895 4 C -0.174 4.174 5 C -0.139 4.139 6 H 0.118 0.882 7 C -0.101 4.101 8 C 0.545 3.455 9 O -0.538 6.538 10 N -0.651 5.651 11 C 0.103 3.897 12 C -0.137 4.137 13 C 0.134 3.866 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.113 3.887 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.090 0.910 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.765 20.517 -15.380 28.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.172 4.172 3 H 0.123 0.877 4 C -0.211 4.211 5 C -0.158 4.158 6 H 0.136 0.864 7 C -0.141 4.141 8 C 0.335 3.665 9 O -0.414 6.414 10 N -0.387 5.387 11 C -0.020 4.020 12 C -0.156 4.156 13 C 0.009 3.991 14 N -0.394 5.394 15 C 0.318 3.682 16 O -0.391 6.391 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.010 4.010 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.156 18.724 -15.935 28.370 hybrid contribution -1.623 1.988 0.968 2.743 sum 12.532 20.713 -14.966 28.462 Atomic orbital electron populations 1.21376 0.92751 1.02117 1.01948 1.22432 0.95451 0.94562 1.04706 0.87701 1.23181 1.02557 1.01435 0.93913 1.22142 1.01169 0.98507 0.93961 0.86440 1.21112 0.97859 0.95742 0.99381 1.20206 0.88408 0.80108 0.77739 1.90708 1.15136 1.72615 1.62989 1.49609 1.10663 1.29051 1.49418 1.23171 0.85244 0.98587 0.95023 1.23198 0.96729 0.98266 0.97402 1.21136 0.86998 0.94559 0.96438 1.45974 1.27021 1.09401 1.57018 1.20320 0.84707 0.84119 0.79052 1.90714 1.67964 1.24493 1.55882 1.23530 0.96950 1.08321 1.01638 1.85411 1.29433 0.99659 1.68887 1.22865 1.10968 0.95422 1.39193 0.90913 1.24994 0.98102 0.94488 0.95999 1.70019 1.37497 0.99686 1.43036 0.86166 0.81595 0.78394 0.79333 1.20276 1.20743 1.19702 1.22930 0.97109 0.90354 0.90599 0.92073 0.92043 0.92443 0.88780 0.88727 0.88471 0.88809 0.89982 0.88978 0.86940 0.90947 0.90721 0.76743 0.89192 0.89194 0.92163 0.89156 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 9.19 37.16 0.34 -0.26 16 2 C -0.15 -0.91 6.41 -90.61 -0.58 -1.49 16 3 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.17 -1.14 9.82 -26.73 -0.26 -1.40 16 5 C -0.14 -1.05 5.41 -90.62 -0.49 -1.54 16 6 H 0.12 1.10 7.31 -51.93 -0.38 0.72 16 7 C -0.10 -0.69 4.89 -27.89 -0.14 -0.82 16 8 C 0.54 5.41 8.08 -10.99 -0.09 5.32 16 9 O -0.54 -7.48 16.34 5.56 0.09 -7.39 16 10 N -0.65 -5.26 3.69 -185.35 -0.68 -5.94 16 11 C 0.10 0.57 7.98 -8.63 -0.07 0.50 16 12 C -0.14 -0.83 4.09 -90.23 -0.37 -1.20 16 13 C 0.13 1.20 5.59 -4.05 -0.02 1.17 16 14 N -0.74 -8.19 5.56 -60.30 -0.33 -8.52 16 15 C 0.53 9.09 7.85 -10.99 -0.09 9.00 16 16 O -0.52 -11.07 15.86 5.55 0.09 -10.98 16 17 C -0.15 -2.91 6.16 36.00 0.22 -2.69 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 23 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 C 0.11 0.82 8.20 -8.49 -0.07 0.75 16 28 H 0.06 0.27 7.84 -51.93 -0.41 -0.13 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.26 7.90 -51.93 -0.41 -0.15 16 31 H 0.09 0.56 7.94 -51.93 -0.41 0.15 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.52 7.77 -51.93 -0.40 0.11 16 34 H 0.09 0.52 7.88 -51.93 -0.41 0.11 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.48 7.88 -51.93 -0.41 0.07 16 37 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.69 7.81 -51.93 -0.41 0.28 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.40 3.20 8.47 -40.82 -0.35 2.85 16 41 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 42 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 393.06 15.07 5.92 5.92 Total: -1.00 -36.43 393.06 -10.18 -46.61 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.35 Total: -1.53 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.41 Total: -5.33 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: -0.29 Total: -39.49 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.18 Total: -18.37 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.43 -10.18 -46.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498474880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.813 kcal (2) G-P(sol) polarization free energy of solvation -36.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds