Wall clock time and date at job start Tue Mar 31 2020 14:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 115.55067 * 2 1 4 4 C 1.52999 * 117.51737 * 214.30034 * 2 1 3 5 5 C 1.53005 * 117.49765 * 145.67013 * 2 1 3 6 6 H 1.09004 * 117.49360 * 215.00124 * 5 2 1 7 7 C 1.52992 * 117.50124 * 0.02562 * 5 2 1 8 8 C 1.50699 * 109.47309 * 185.00331 * 7 5 2 9 9 O 1.21279 * 119.99936 * 359.97438 * 8 7 5 10 10 N 1.34775 * 120.00209 * 179.97438 * 8 7 5 11 11 C 1.47067 * 136.05444 * 359.62996 * 10 8 7 12 12 C 1.53243 * 88.08288 * 207.19901 * 11 10 8 13 13 C 1.52993 * 114.32922 * 220.46942 * 12 11 10 14 14 N 1.46496 * 109.47274 * 268.75740 * 13 12 11 15 15 C 1.34778 * 120.00383 * 179.97438 * 14 13 12 16 16 O 1.21284 * 119.99707 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00320 * 179.97438 * 15 14 13 18 18 S 1.80996 * 109.47336 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00108 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99949 * 0.02562 * 19 18 17 21 21 C 1.38803 * 120.00102 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99599 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00084 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47080 * 90.00339 * 23 21 19 25 25 H 1.48500 * 109.47186 * 210.00148 * 23 21 19 26 26 H 1.48499 * 109.47438 * 330.00459 * 23 21 19 27 27 C 1.47063 * 136.05718 * 179.97438 * 10 8 7 28 28 H 1.08996 * 109.46543 * 274.41652 * 1 2 3 29 29 H 1.08999 * 109.47163 * 34.41886 * 1 2 3 30 30 H 1.09000 * 109.46851 * 154.42084 * 1 2 3 31 31 H 1.09003 * 117.50034 * 0.02562 * 4 2 1 32 32 H 1.08995 * 117.49797 * 145.02727 * 4 2 1 33 33 H 1.09005 * 109.47055 * 305.00042 * 7 5 2 34 34 H 1.09001 * 109.47416 * 64.99321 * 7 5 2 35 35 H 1.09000 * 113.47031 * 321.93184 * 11 10 8 36 36 H 1.09006 * 113.47058 * 92.37227 * 11 10 8 37 37 H 1.08995 * 114.19528 * 87.72226 * 12 11 10 38 38 H 1.08996 * 109.47152 * 28.75901 * 13 12 11 39 39 H 1.09001 * 109.47199 * 148.75466 * 13 12 11 40 40 H 0.97004 * 119.99765 * 359.97438 * 14 13 12 41 41 H 1.09001 * 109.47079 * 300.00872 * 17 15 14 42 42 H 1.09001 * 109.46640 * 60.00297 * 17 15 14 43 43 H 0.97005 * 119.99524 * 179.97438 * 22 21 19 44 44 H 1.09002 * 113.47196 * 267.62666 * 27 10 8 45 45 H 1.09000 * 113.46761 * 38.01318 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7647 5 6 2.2365 -1.1208 0.7654 6 1 3.1714 -0.8746 1.2689 7 6 1.3589 -2.1560 1.4717 8 6 2.2301 -3.0964 2.2640 9 8 3.4344 -2.9529 2.2634 10 7 1.6710 -4.0968 2.9733 11 6 0.3055 -4.5808 3.2262 12 6 0.8051 -5.1349 4.5648 13 6 0.2409 -6.5099 4.9278 14 7 -0.9832 -6.3431 5.7152 15 6 -1.6583 -7.4259 6.1490 16 8 -1.2522 -8.5385 5.8878 17 6 -2.9171 -7.2543 6.9595 18 16 -3.5847 -8.8809 7.3889 19 6 -5.0091 -8.3949 8.3052 20 1 -5.2289 -7.3470 8.4461 21 6 -5.8493 -9.3590 8.8449 22 7 -5.5817 -10.6362 8.6727 23 14 -7.3597 -8.8438 9.8157 24 1 -8.5169 -8.7071 8.8951 25 1 -7.6629 -9.8728 10.8425 26 1 -7.1002 -7.5418 10.4812 27 6 2.1574 -5.1810 3.8396 28 1 -0.3632 0.0791 1.0246 29 1 -0.3633 0.8477 -0.5809 30 1 -0.3633 -0.9270 -0.4437 31 1 1.6120 -1.8585 -1.2683 32 1 3.1721 -0.8750 -1.2677 33 1 0.6673 -1.6481 2.1439 34 1 0.7950 -2.7213 0.7296 35 1 -0.4257 -3.7799 3.3354 36 1 -0.0169 -5.3545 2.5293 37 1 0.7630 -4.4210 5.3874 38 1 0.0137 -7.0617 4.0157 39 1 0.9768 -7.0617 5.5126 40 1 -1.3078 -5.4532 5.9245 41 1 -2.6895 -6.7029 7.8718 42 1 -3.6530 -6.7019 6.3751 43 1 -6.1687 -11.3099 9.0503 44 1 2.3331 -6.1161 3.3078 45 1 2.9986 -4.8897 4.4687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498474880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:26 Heat of formation + Delta-G solvation = -45.635516 kcal Electronic energy + Delta-G solvation = -23866.130052 eV Core-core repulsion = 20203.646284 eV Total energy + Delta-G solvation = -3662.483768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64046 -40.48426 -39.57433 -38.31018 -35.67230 -34.55424 -32.43707 -31.22236 -29.96650 -28.92861 -27.66859 -27.00038 -26.41557 -22.66768 -22.06149 -21.71026 -20.57887 -19.80907 -19.74442 -18.23849 -17.73166 -17.56052 -17.30226 -16.85217 -16.62850 -16.45407 -15.97237 -15.85332 -15.28747 -14.83476 -14.80475 -14.56444 -14.35134 -14.08951 -13.85333 -13.61894 -13.53244 -13.41939 -13.13250 -13.01457 -12.91764 -12.86256 -12.59019 -12.46481 -12.38035 -12.13069 -11.71779 -11.63839 -11.11637 -11.03871 -10.88479 -10.83734 -10.65026 -10.22791 -10.04731 -9.79131 -8.62753 -8.32071 -6.09353 1.30472 1.44391 1.50151 1.54735 1.59896 1.68309 1.77468 2.28435 2.34103 2.81368 3.02308 3.22111 3.38373 3.44147 3.69101 3.81322 3.91827 3.95365 4.02630 4.11281 4.20975 4.33397 4.37271 4.44565 4.47569 4.55759 4.56308 4.58264 4.62580 4.68027 4.78353 4.83984 4.86945 4.92177 4.98523 5.02299 5.21931 5.23185 5.29614 5.44944 5.45525 5.49815 6.22612 6.57409 6.67458 7.07485 7.09685 7.32053 8.76958 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.001731 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.763898 B =16176.380300 C =17151.539477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.141 4.141 3 H 0.106 0.894 4 C -0.179 4.179 5 C -0.155 4.155 6 H 0.091 0.909 7 C -0.091 4.091 8 C 0.537 3.463 9 O -0.590 6.590 10 N -0.653 5.653 11 C 0.106 3.894 12 C -0.116 4.116 13 C 0.135 3.865 14 N -0.709 5.709 15 C 0.534 3.466 16 O -0.568 6.568 17 C -0.130 4.130 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.258 1.258 27 C 0.104 3.896 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.419 0.581 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.270 0.730 44 H 0.095 0.905 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.052 23.100 -15.506 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 H 0.124 0.876 4 C -0.216 4.216 5 C -0.174 4.174 6 H 0.109 0.891 7 C -0.131 4.131 8 C 0.329 3.671 9 O -0.470 6.470 10 N -0.388 5.388 11 C -0.016 4.016 12 C -0.135 4.135 13 C 0.011 3.989 14 N -0.364 5.364 15 C 0.320 3.680 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.181 1.181 27 C -0.019 4.019 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.145 0.855 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.256 0.744 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.079 0.921 44 H 0.113 0.887 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.431 21.365 -16.066 29.480 hybrid contribution -0.956 1.245 0.952 1.837 sum 11.474 22.610 -15.114 29.518 Atomic orbital electron populations 1.21408 0.91432 1.02713 1.02592 1.22507 0.96370 0.94109 1.02981 0.87590 1.23258 1.02817 1.02174 0.93365 1.22074 1.00858 1.00022 0.94427 0.89106 1.21116 0.97318 0.95042 0.99578 1.20806 0.88123 0.80561 0.77624 1.90683 1.17422 1.74038 1.64897 1.49696 1.12047 1.28504 1.48548 1.23336 0.84442 0.99486 0.94314 1.23006 0.95616 0.96712 0.98194 1.21220 0.85655 0.96305 0.95764 1.45661 1.26583 1.08807 1.55302 1.20018 0.84436 0.84606 0.78954 1.90708 1.69136 1.26719 1.58038 1.23380 0.98154 1.03353 1.03241 1.85600 1.30646 1.06990 1.69579 1.23216 1.11039 0.96013 1.39010 0.89790 1.26112 1.01649 0.94363 0.97071 1.70188 1.39050 1.01117 1.44451 0.84971 0.77062 0.78413 0.77648 1.19335 1.20536 1.18146 1.23048 0.97543 0.90510 0.90844 0.91366 0.91443 0.91894 0.87921 0.89147 0.86468 0.87104 0.87378 0.88170 0.85464 0.91088 0.91646 0.74381 0.87228 0.86909 0.92080 0.88719 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.19 71.98 0.66 -0.20 16 2 C -0.14 -1.48 6.41 -10.79 -0.07 -1.55 16 3 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.18 -2.21 9.82 30.60 0.30 -1.91 16 5 C -0.16 -2.25 5.41 -10.79 -0.06 -2.30 16 6 H 0.09 1.81 7.31 -2.38 -0.02 1.79 16 7 C -0.09 -1.06 4.89 29.85 0.15 -0.92 16 8 C 0.54 10.17 8.08 87.66 0.71 10.88 16 9 O -0.59 -16.85 16.34 -3.02 -0.05 -16.90 16 10 N -0.65 -9.30 3.69 -858.71 -3.17 -12.47 16 11 C 0.11 0.81 7.98 83.10 0.66 1.47 16 12 C -0.12 -1.07 4.09 -10.54 -0.04 -1.11 16 13 C 0.13 2.11 5.59 86.38 0.48 2.59 16 14 N -0.71 -13.61 5.56 -463.08 -2.57 -16.18 16 15 C 0.53 17.45 7.85 87.66 0.69 18.14 16 16 O -0.57 -24.42 15.86 -3.04 -0.05 -24.47 16 17 C -0.13 -4.70 6.16 71.24 0.44 -4.26 16 18 S -0.16 -8.32 20.57 -56.49 -1.16 -9.48 16 19 C -0.54 -30.20 9.50 67.96 0.65 -29.55 16 20 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -55.11 13.22 21.65 0.29 -54.82 16 23 Si 1.00 42.55 29.55 68.60 2.03 44.57 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 27 C 0.10 1.36 8.20 83.19 0.68 2.04 16 28 H 0.07 0.39 7.84 -2.39 -0.02 0.38 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.38 7.90 -2.39 -0.02 0.36 16 31 H 0.10 1.06 7.94 -2.39 -0.02 1.04 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.12 0.87 7.77 -2.38 -0.02 0.85 16 34 H 0.11 0.91 7.88 -2.39 -0.02 0.90 16 35 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.10 0.68 7.88 -2.38 -0.02 0.66 16 37 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.21 7.81 -2.39 -0.02 1.19 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.42 4.90 8.47 -92.71 -0.79 4.12 16 41 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 42 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 43 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 44 H 0.09 1.16 8.10 -2.39 -0.02 1.14 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -83.08 393.06 1.22 -81.86 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.20 Total: 13.40 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 5.71 Total: -5.51 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -5.46 Total: -83.47 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.10 Total: -41.37 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.48 kcal Total: -83.08 1.22 -81.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498474880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.222 kcal (2) G-P(sol) polarization free energy of solvation -83.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds