Wall clock time and date at job start Tue Mar 31 2020 15:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47256 * 2 1 4 4 C 1.50703 * 109.47149 * 120.00378 * 2 1 3 5 5 H 1.07991 * 120.00460 * 114.36752 * 4 2 1 6 6 C 1.37879 * 119.99638 * 294.36518 * 4 2 1 7 7 N 1.31516 * 120.00105 * 165.23918 * 6 4 2 8 8 Si 1.86802 * 120.00037 * 345.24279 * 6 4 2 9 9 H 1.48503 * 109.47186 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47239 * 299.99613 * 8 6 4 11 11 H 1.48497 * 109.47278 * 59.99800 * 8 6 4 12 12 N 1.46508 * 109.47127 * 239.99780 * 2 1 3 13 13 C 1.46494 * 119.99946 * 304.66194 * 12 2 1 14 14 C 1.34773 * 119.99645 * 124.66002 * 12 2 1 15 15 O 1.21284 * 119.99953 * 183.62624 * 14 12 2 16 16 C 1.50700 * 120.00258 * 3.62199 * 14 12 2 17 17 H 1.09001 * 108.70061 * 47.90627 * 16 14 12 18 18 C 1.54556 * 108.75908 * 289.80062 * 16 14 12 19 19 S 1.84207 * 101.32988 * 215.93508 * 18 16 14 20 20 C 1.84076 * 93.91010 * 32.25349 * 19 18 16 21 21 N 1.45501 * 108.75229 * 166.15589 * 16 14 12 22 22 C 1.34773 * 122.43448 * 299.91324 * 21 16 14 23 23 O 1.21279 * 119.99787 * 0.02562 * 22 21 16 24 24 C 1.50700 * 120.00110 * 179.97438 * 22 21 16 25 25 C 1.53773 * 113.61832 * 279.14468 * 24 22 21 26 26 C 1.53963 * 87.01888 * 220.04840 * 25 24 22 27 27 C 1.53777 * 87.10911 * 25.36054 * 26 25 24 28 28 H 1.09006 * 109.47018 * 184.36224 * 1 2 3 29 29 H 1.08998 * 109.47226 * 304.36000 * 1 2 3 30 30 H 1.08998 * 109.47345 * 64.36695 * 1 2 3 31 31 H 0.96996 * 119.99584 * 354.92382 * 7 6 4 32 32 H 1.09006 * 109.46966 * 94.69915 * 13 12 2 33 33 H 1.09000 * 109.47155 * 214.69989 * 13 12 2 34 34 H 1.08999 * 109.47434 * 334.70032 * 13 12 2 35 35 H 1.09000 * 111.05244 * 333.94767 * 18 16 14 36 36 H 1.08998 * 111.05480 * 97.91848 * 18 16 14 37 37 H 1.09000 * 110.77475 * 208.27726 * 20 19 18 38 38 H 1.09004 * 110.77173 * 84.85062 * 20 19 18 39 39 H 1.08999 * 112.84323 * 50.34507 * 24 22 21 40 40 H 1.09002 * 113.61439 * 334.56225 * 25 24 22 41 41 H 1.09002 * 113.61747 * 105.47154 * 25 24 22 42 42 H 1.09007 * 113.53254 * 270.80959 * 26 25 24 43 43 H 1.08995 * 113.66452 * 139.93310 * 26 25 24 44 44 H 1.08998 * 113.61653 * 220.08781 * 27 26 25 45 45 H 1.09002 * 113.68715 * 89.20084 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5762 -1.6385 1.1340 6 6 1.7977 -0.1756 2.4794 7 7 1.9686 -0.9144 3.5539 8 14 1.2368 1.5985 2.6453 9 1 1.0551 1.9279 4.0819 10 1 2.2606 2.4985 2.0563 11 1 -0.0518 1.7792 1.9297 12 7 2.0184 -0.6907 -1.1962 13 6 1.5822 -2.0600 -1.4807 14 6 2.8688 -0.0663 -2.0348 15 8 3.2216 -0.6127 -3.0585 16 6 3.3814 1.3109 -1.7006 17 1 3.7258 1.3142 -0.6664 18 6 2.2191 2.3205 -1.8370 19 16 3.0983 3.7970 -2.5006 20 6 4.3333 2.7994 -3.4322 21 7 4.5081 1.6143 -2.5698 22 6 5.6298 0.8674 -2.5865 23 8 5.7261 -0.0983 -1.8593 24 6 6.7638 1.2316 -3.5098 25 6 6.5594 0.7510 -4.9561 26 6 8.0573 0.3951 -4.9644 27 6 7.9542 0.2608 -3.4360 28 1 -0.3633 -1.0247 0.0782 29 1 -0.3633 0.5800 0.8483 30 1 -0.3634 0.4446 -0.9265 31 1 2.1881 -1.8551 3.4657 32 1 0.7267 -2.0359 -2.1557 33 1 2.3982 -2.6115 -1.9478 34 1 1.2973 -2.5513 -0.5504 35 1 1.4694 1.9615 -2.5421 36 1 1.7708 2.5349 -0.8669 37 1 5.2717 3.3443 -3.5355 38 1 3.9418 2.5129 -4.4083 39 1 7.0506 2.2805 -3.4345 40 1 5.9042 -0.1161 -5.0396 41 1 6.2958 1.5504 -5.6487 42 1 8.6978 1.2154 -5.2885 43 1 8.2811 -0.5436 -5.4712 44 1 8.8149 0.6648 -2.9031 45 1 7.6812 -0.7402 -3.1018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548530950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:51 Heat of formation + Delta-G solvation = -24.718924 kcal Electronic energy + Delta-G solvation = -27589.888826 eV Core-core repulsion = 23928.312070 eV Total energy + Delta-G solvation = -3661.576756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.72105 -39.32648 -37.43003 -35.93990 -35.73255 -32.68900 -31.66908 -29.99466 -27.57111 -26.88530 -26.51769 -25.73130 -24.88174 -23.42327 -21.48892 -20.56334 -19.30775 -18.32492 -17.88772 -17.37621 -17.14028 -16.77091 -15.63588 -15.44208 -15.17777 -14.95126 -14.53722 -14.26149 -14.09239 -13.60524 -13.49493 -13.20804 -12.98543 -12.76120 -12.54953 -12.47799 -12.23623 -12.11688 -12.03200 -11.92400 -11.70676 -11.48658 -11.30223 -11.21240 -10.82450 -10.69673 -10.65092 -10.52584 -10.12321 -9.85277 -9.63125 -9.36990 -9.13065 -8.65668 -8.50574 -8.00986 -7.90236 -6.57835 -4.26533 1.47844 1.82823 2.60564 2.80355 3.09952 3.17844 3.26538 3.42730 3.78163 4.23784 4.32379 4.39448 4.46937 4.57394 4.67603 4.71800 4.80052 4.98052 5.03842 5.07884 5.17463 5.35814 5.38156 5.52344 5.67851 5.71610 5.74914 5.85871 5.90155 5.97469 6.03266 6.07825 6.16865 6.24224 6.33132 6.34478 6.43848 6.65371 6.88409 7.24750 7.29116 7.69334 8.11805 8.25231 8.27273 8.67278 8.82890 9.43533 10.77383 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.004785 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.632569 B = 5849.940729 C = 6380.317918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.227 3.773 3 H 0.039 0.961 4 C -0.613 4.613 5 H 0.065 0.935 6 C 0.039 3.961 7 N -0.896 5.896 8 Si 1.026 2.974 9 H -0.279 1.279 10 H -0.278 1.278 11 H -0.267 1.267 12 N -0.581 5.581 13 C 0.100 3.900 14 C 0.512 3.488 15 O -0.553 6.553 16 C 0.115 3.885 17 H 0.118 0.882 18 C -0.060 4.060 19 S -0.268 6.268 20 C 0.159 3.841 21 N -0.598 5.598 22 C 0.541 3.459 23 O -0.509 6.509 24 C -0.134 4.134 25 C -0.121 4.121 26 C -0.141 4.141 27 C -0.117 4.117 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.271 0.729 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 8.676 -15.682 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.125 3.875 3 H 0.056 0.944 4 C -0.651 4.651 5 H 0.083 0.917 6 C -0.168 4.168 7 N -0.529 5.529 8 Si 0.854 3.146 9 H -0.205 1.205 10 H -0.204 1.204 11 H -0.194 1.194 12 N -0.311 5.311 13 C -0.043 4.043 14 C 0.297 3.703 15 O -0.432 6.432 16 C 0.006 3.994 17 H 0.136 0.864 18 C -0.208 4.208 19 S -0.042 6.042 20 C -0.075 4.075 21 N -0.335 5.335 22 C 0.328 3.672 23 O -0.382 6.382 24 C -0.156 4.156 25 C -0.159 4.159 26 C -0.178 4.178 27 C -0.154 4.154 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.151 0.849 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.559 10.222 -14.526 18.338 hybrid contribution 0.331 -2.314 -1.026 2.553 sum 4.890 7.907 -15.553 18.120 Atomic orbital electron populations 1.22642 0.98115 1.02112 0.99964 1.19448 0.91193 0.93121 0.83781 0.94385 1.22209 1.40583 1.11660 0.90601 0.91699 1.25654 0.94239 1.05173 0.91749 1.70808 1.42815 1.08640 1.30606 0.84379 0.77251 0.75806 0.77188 1.20470 1.20437 1.19361 1.47864 1.44369 1.14660 1.24202 1.21393 0.98742 0.83089 1.01093 1.20312 0.79070 0.87258 0.83690 1.90591 1.59201 1.67189 1.26242 1.21197 0.87185 0.93396 0.97591 0.86393 1.24655 0.98137 0.91658 1.06370 1.88224 1.37438 1.14315 1.64183 1.24196 1.01027 0.86883 0.95401 1.48154 1.15777 1.28710 1.40841 1.20291 0.81939 0.81885 0.83068 1.90764 1.80146 1.26274 1.41050 1.22789 0.95073 1.01641 0.96065 1.22864 0.97618 1.01939 0.93485 1.22853 0.96199 1.02032 0.96746 1.22799 0.96131 1.00396 0.96106 0.92620 0.91235 0.95246 0.91874 0.94024 0.92296 0.90311 0.87631 0.84908 0.86707 0.88591 0.87102 0.89134 0.90850 0.89990 0.90969 0.90980 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 8.70 37.16 0.32 -2.97 16 2 C 0.23 4.90 1.69 -69.08 -0.12 4.79 16 3 H 0.04 0.80 2.57 -51.93 -0.13 0.66 16 4 C -0.61 -16.07 8.41 -34.44 -0.29 -16.36 16 5 H 0.06 1.92 7.79 -52.49 -0.41 1.51 16 6 C 0.04 1.04 5.37 -17.82 -0.10 0.95 16 7 N -0.90 -26.21 13.70 55.43 0.76 -25.45 16 8 Si 1.03 22.67 26.37 -169.99 -4.48 18.19 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 11 H -0.27 -5.19 5.35 56.52 0.30 -4.89 16 12 N -0.58 -12.25 2.75 -175.26 -0.48 -12.74 16 13 C 0.10 1.95 9.27 59.84 0.55 2.51 16 14 C 0.51 10.67 5.90 -10.99 -0.06 10.60 16 15 O -0.55 -12.49 15.12 -4.12 -0.06 -12.55 16 16 C 0.12 2.08 2.08 -68.80 -0.14 1.93 16 17 H 0.12 2.42 7.36 -51.93 -0.38 2.04 16 18 C -0.06 -0.88 6.05 37.97 0.23 -0.65 16 19 S -0.27 -3.47 23.43 -107.50 -2.52 -5.98 16 20 C 0.16 1.84 7.21 60.45 0.44 2.28 16 21 N -0.60 -9.49 2.69 -169.15 -0.45 -9.95 16 22 C 0.54 9.19 6.40 -10.99 -0.07 9.12 16 23 O -0.51 -11.17 14.98 -4.11 -0.06 -11.23 16 24 C -0.13 -1.59 3.10 -90.96 -0.28 -1.87 16 25 C -0.12 -1.25 7.64 -25.83 -0.20 -1.45 16 26 C -0.14 -1.26 8.09 -25.82 -0.21 -1.47 16 27 C -0.12 -1.34 7.40 -25.92 -0.19 -1.54 16 28 H 0.05 1.09 7.63 -51.93 -0.40 0.69 16 29 H 0.07 1.36 4.50 -51.93 -0.23 1.13 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.27 7.98 8.73 -40.82 -0.36 7.62 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.19 7.62 -51.93 -0.40 0.79 16 34 H 0.08 1.57 7.22 -51.93 -0.38 1.20 16 35 H 0.11 1.47 7.85 -51.93 -0.41 1.06 16 36 H 0.13 1.93 6.64 -51.93 -0.34 1.59 16 37 H 0.11 1.00 6.94 -51.93 -0.36 0.64 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.11 1.01 7.30 -51.93 -0.38 0.63 16 40 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.10 1.36 7.45 -51.93 -0.39 0.97 16 LS Contribution 360.59 15.07 5.43 5.43 Total: -1.00 -32.78 360.59 -8.82 -41.59 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.83 Total: 6.81 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -0.12 Total: 5.87 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.18 Total: -48.13 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.12 Total: -23.78 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.48 Total: 18.19 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.52 Total: -5.98 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.78 -8.82 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548530950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.876 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds