Wall clock time and date at job start Tue Mar 31 2020 15:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47256 * 2 1 4 4 C 1.50703 * 109.47149 * 120.00378 * 2 1 3 5 5 H 1.07991 * 120.00460 * 114.36752 * 4 2 1 6 6 C 1.37879 * 119.99638 * 294.36518 * 4 2 1 7 7 N 1.31516 * 120.00105 * 165.23918 * 6 4 2 8 8 Si 1.86802 * 120.00037 * 345.24279 * 6 4 2 9 9 H 1.48503 * 109.47186 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47239 * 299.99613 * 8 6 4 11 11 H 1.48497 * 109.47278 * 59.99800 * 8 6 4 12 12 N 1.46508 * 109.47127 * 239.99780 * 2 1 3 13 13 C 1.46494 * 119.99946 * 304.66194 * 12 2 1 14 14 C 1.34773 * 119.99645 * 124.66002 * 12 2 1 15 15 O 1.21284 * 119.99953 * 183.62624 * 14 12 2 16 16 C 1.50700 * 120.00258 * 3.62199 * 14 12 2 17 17 H 1.09001 * 108.70061 * 47.90627 * 16 14 12 18 18 C 1.54556 * 108.75908 * 289.80062 * 16 14 12 19 19 S 1.84207 * 101.32988 * 215.93508 * 18 16 14 20 20 C 1.84076 * 93.91010 * 32.25349 * 19 18 16 21 21 N 1.45501 * 108.75229 * 166.15589 * 16 14 12 22 22 C 1.34773 * 122.43448 * 299.91324 * 21 16 14 23 23 O 1.21279 * 119.99787 * 0.02562 * 22 21 16 24 24 C 1.50700 * 120.00110 * 179.97438 * 22 21 16 25 25 C 1.53773 * 113.61832 * 279.14468 * 24 22 21 26 26 C 1.53963 * 87.01888 * 220.04840 * 25 24 22 27 27 C 1.53777 * 87.10911 * 25.36054 * 26 25 24 28 28 H 1.09006 * 109.47018 * 184.36224 * 1 2 3 29 29 H 1.08998 * 109.47226 * 304.36000 * 1 2 3 30 30 H 1.08998 * 109.47345 * 64.36695 * 1 2 3 31 31 H 0.96996 * 119.99584 * 354.92382 * 7 6 4 32 32 H 1.09006 * 109.46966 * 94.69915 * 13 12 2 33 33 H 1.09000 * 109.47155 * 214.69989 * 13 12 2 34 34 H 1.08999 * 109.47434 * 334.70032 * 13 12 2 35 35 H 1.09000 * 111.05244 * 333.94767 * 18 16 14 36 36 H 1.08998 * 111.05480 * 97.91848 * 18 16 14 37 37 H 1.09000 * 110.77475 * 208.27726 * 20 19 18 38 38 H 1.09004 * 110.77173 * 84.85062 * 20 19 18 39 39 H 1.08999 * 112.84323 * 50.34507 * 24 22 21 40 40 H 1.09002 * 113.61439 * 334.56225 * 25 24 22 41 41 H 1.09002 * 113.61747 * 105.47154 * 25 24 22 42 42 H 1.09007 * 113.53254 * 270.80959 * 26 25 24 43 43 H 1.08995 * 113.66452 * 139.93310 * 26 25 24 44 44 H 1.08998 * 113.61653 * 220.08781 * 27 26 25 45 45 H 1.09002 * 113.68715 * 89.20084 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5762 -1.6385 1.1340 6 6 1.7977 -0.1756 2.4794 7 7 1.9686 -0.9144 3.5539 8 14 1.2368 1.5985 2.6453 9 1 1.0551 1.9279 4.0819 10 1 2.2606 2.4985 2.0563 11 1 -0.0518 1.7792 1.9297 12 7 2.0184 -0.6907 -1.1962 13 6 1.5822 -2.0600 -1.4807 14 6 2.8688 -0.0663 -2.0348 15 8 3.2216 -0.6127 -3.0585 16 6 3.3814 1.3109 -1.7006 17 1 3.7258 1.3142 -0.6664 18 6 2.2191 2.3205 -1.8370 19 16 3.0983 3.7970 -2.5006 20 6 4.3333 2.7994 -3.4322 21 7 4.5081 1.6143 -2.5698 22 6 5.6298 0.8674 -2.5865 23 8 5.7261 -0.0983 -1.8593 24 6 6.7638 1.2316 -3.5098 25 6 6.5594 0.7510 -4.9561 26 6 8.0573 0.3951 -4.9644 27 6 7.9542 0.2608 -3.4360 28 1 -0.3633 -1.0247 0.0782 29 1 -0.3633 0.5800 0.8483 30 1 -0.3634 0.4446 -0.9265 31 1 2.1881 -1.8551 3.4657 32 1 0.7267 -2.0359 -2.1557 33 1 2.3982 -2.6115 -1.9478 34 1 1.2973 -2.5513 -0.5504 35 1 1.4694 1.9615 -2.5421 36 1 1.7708 2.5349 -0.8669 37 1 5.2717 3.3443 -3.5355 38 1 3.9418 2.5129 -4.4083 39 1 7.0506 2.2805 -3.4345 40 1 5.9042 -0.1161 -5.0396 41 1 6.2958 1.5504 -5.6487 42 1 8.6978 1.2154 -5.2885 43 1 8.2811 -0.5436 -5.4712 44 1 8.8149 0.6648 -2.9031 45 1 7.6812 -0.7402 -3.1018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548530950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:51 Heat of formation + Delta-G solvation = -46.359347 kcal Electronic energy + Delta-G solvation = -27590.827225 eV Core-core repulsion = 23928.312070 eV Total energy + Delta-G solvation = -3662.515155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05426 -40.70849 -38.56081 -37.54214 -37.23641 -34.71084 -32.94979 -31.76606 -28.78050 -27.94690 -27.86260 -26.81133 -26.58641 -24.71087 -23.15612 -21.81128 -20.37630 -19.84927 -19.62441 -18.82429 -18.49500 -18.08078 -16.78991 -16.71670 -16.67892 -16.18373 -15.99691 -15.63130 -15.38505 -15.13642 -14.90194 -14.54516 -14.31304 -14.10392 -14.01839 -13.81394 -13.54465 -13.50392 -13.34347 -13.22058 -13.13715 -12.95972 -12.87099 -12.41214 -12.26771 -11.97810 -11.84920 -11.51329 -11.46804 -11.33702 -11.11318 -11.03118 -10.75905 -10.53813 -9.99188 -9.68687 -8.98100 -8.73533 -6.45288 0.46758 0.77349 1.32028 1.42154 1.51791 1.53934 1.58515 1.68267 2.22858 2.48487 3.01069 3.03973 3.32377 3.41707 3.54778 3.67638 3.76432 3.87058 3.92191 4.12039 4.16000 4.22209 4.30914 4.34343 4.41090 4.45153 4.63269 4.65854 4.73943 4.76154 4.77471 4.81722 4.89268 4.99078 5.04451 5.07357 5.13871 5.28817 5.50271 5.61542 5.76958 5.96585 6.04493 6.32934 6.60693 6.98169 7.10886 7.35914 8.57760 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.004785 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.632569 B = 5849.940729 C = 6380.317918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.231 3.769 3 H 0.057 0.943 4 C -0.613 4.613 5 H 0.011 0.989 6 C -0.012 4.012 7 N -0.933 5.933 8 Si 1.059 2.941 9 H -0.290 1.290 10 H -0.256 1.256 11 H -0.214 1.214 12 N -0.590 5.590 13 C 0.102 3.898 14 C 0.506 3.494 15 O -0.576 6.576 16 C 0.117 3.883 17 H 0.085 0.915 18 C -0.063 4.063 19 S -0.247 6.247 20 C 0.155 3.845 21 N -0.600 5.600 22 C 0.529 3.471 23 O -0.577 6.577 24 C -0.129 4.129 25 C -0.117 4.117 26 C -0.122 4.122 27 C -0.130 4.130 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.251 0.749 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.153 0.847 38 H 0.115 0.885 39 H 0.153 0.847 40 H 0.054 0.946 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 13.028 -18.698 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.128 3.872 3 H 0.074 0.926 4 C -0.651 4.651 5 H 0.029 0.971 6 C -0.211 4.211 7 N -0.568 5.568 8 Si 0.878 3.122 9 H -0.216 1.216 10 H -0.181 1.181 11 H -0.138 1.138 12 N -0.321 5.321 13 C -0.041 4.041 14 C 0.292 3.708 15 O -0.456 6.456 16 C 0.007 3.993 17 H 0.103 0.897 18 C -0.212 4.212 19 S -0.020 6.020 20 C -0.077 4.077 21 N -0.335 5.335 22 C 0.319 3.681 23 O -0.455 6.455 24 C -0.150 4.150 25 C -0.154 4.154 26 C -0.159 4.159 27 C -0.168 4.168 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.171 0.829 38 H 0.133 0.867 39 H 0.170 0.830 40 H 0.073 0.927 41 H 0.127 0.873 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.114 14.593 -17.604 23.233 hybrid contribution 0.576 -3.793 -0.121 3.839 sum 4.691 10.799 -17.725 21.279 Atomic orbital electron populations 1.22512 0.95509 1.02154 1.01994 1.19380 0.92947 0.93144 0.81717 0.92577 1.22337 1.39646 1.09861 0.93290 0.97085 1.27241 0.93618 1.08983 0.91217 1.70956 1.46017 1.07835 1.31960 0.84077 0.80002 0.70646 0.77493 1.21633 1.18092 1.13771 1.47986 1.44871 1.15059 1.24159 1.21376 0.99182 0.82657 1.00845 1.20892 0.78263 0.88403 0.83230 1.90565 1.59637 1.68103 1.27338 1.21094 0.88889 0.92835 0.96444 0.89679 1.24599 0.97179 0.91998 1.07395 1.88176 1.37166 1.12588 1.64066 1.24623 1.02814 0.85271 0.95012 1.48324 1.14709 1.29675 1.40816 1.21402 0.83084 0.80918 0.82690 1.90735 1.81519 1.29282 1.43928 1.23042 0.92739 1.03714 0.95486 1.22827 0.98032 1.01651 0.92929 1.22846 0.95674 1.03335 0.94055 1.22818 0.96730 0.98457 0.98778 0.93495 0.90881 0.91546 0.94030 0.91017 0.93845 0.91683 0.86412 0.84400 0.82916 0.86708 0.82953 0.92712 0.87258 0.86510 0.91011 0.89615 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.95 8.70 71.98 0.63 -5.32 16 2 C 0.23 9.90 1.69 44.25 0.07 9.98 16 3 H 0.06 2.25 2.57 -2.39 -0.01 2.25 16 4 C -0.61 -33.63 8.41 25.60 0.22 -33.41 16 5 H 0.01 0.69 7.79 -2.92 -0.02 0.67 16 6 C -0.01 -0.65 5.37 84.65 0.45 -0.19 16 7 N -0.93 -57.32 13.70 21.45 0.29 -57.02 16 8 Si 1.06 44.29 26.37 68.60 1.81 46.10 16 9 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 11 H -0.21 -7.18 5.35 99.48 0.53 -6.65 16 12 N -0.59 -25.33 2.75 -826.79 -2.28 -27.61 16 13 C 0.10 4.15 9.27 127.77 1.18 5.33 16 14 C 0.51 21.34 5.90 87.66 0.52 21.86 16 15 O -0.58 -26.55 15.12 6.20 0.09 -26.46 16 16 C 0.12 4.15 2.08 44.96 0.09 4.25 16 17 H 0.09 3.57 7.36 -2.39 -0.02 3.55 16 18 C -0.06 -1.69 6.05 72.51 0.44 -1.25 16 19 S -0.25 -5.39 23.43 -56.49 -1.32 -6.71 16 20 C 0.15 2.96 7.21 127.56 0.92 3.88 16 21 N -0.60 -18.20 2.69 -807.47 -2.17 -20.37 16 22 C 0.53 17.97 6.40 87.66 0.56 18.53 16 23 O -0.58 -26.87 14.98 6.22 0.09 -26.77 16 24 C -0.13 -2.77 3.10 -11.02 -0.03 -2.80 16 25 C -0.12 -2.10 7.64 31.18 0.24 -1.86 16 26 C -0.12 -1.83 8.09 31.18 0.25 -1.57 16 27 C -0.13 -2.91 7.40 31.12 0.23 -2.68 16 28 H 0.05 1.77 7.63 -2.38 -0.02 1.75 16 29 H 0.07 2.60 4.50 -2.39 -0.01 2.59 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 31 H 0.25 15.92 8.73 -92.71 -0.81 15.11 16 32 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.04 1.85 7.62 -2.39 -0.02 1.84 16 34 H 0.06 2.76 7.22 -2.39 -0.02 2.74 16 35 H 0.12 2.87 7.85 -2.39 -0.02 2.86 16 36 H 0.14 3.53 6.64 -2.39 -0.02 3.51 16 37 H 0.15 1.77 6.94 -2.39 -0.02 1.75 16 38 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.15 2.00 7.30 -2.39 -0.02 1.98 16 40 H 0.05 1.39 8.09 -2.39 -0.02 1.38 16 41 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.05 1.67 7.45 -2.39 -0.02 1.66 16 Total: -1.00 -80.20 360.59 3.08 -77.12 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.78 Total: 26.98 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 5.77 Total: 14.74 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -4.15 Total: -105.00 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: 0.19 Total: -53.23 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.81 Total: 46.10 kcal Atomic # 16 Polarization: -5.39 SS G_CDS: -1.32 Total: -6.71 kcal Total: -80.20 3.08 -77.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548530950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.763 kcal (2) G-P(sol) polarization free energy of solvation -80.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds