Wall clock time and date at job start Tue Mar 31 2020 14:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.57886 * 2 1 4 4 C 1.53227 * 109.57528 * 239.61530 * 2 1 3 5 5 N 1.47072 * 109.54947 * 172.88501 * 4 2 1 6 6 C 1.37872 * 110.81463 * 50.37538 * 5 4 2 7 7 C 1.38914 * 127.58734 * 161.51829 * 6 5 4 8 8 C 1.46739 * 126.55516 * 0.63240 * 7 6 5 9 9 O 1.21687 * 119.99856 * 359.70439 * 8 7 6 10 10 N 1.34774 * 120.00213 * 179.70852 * 8 7 6 11 11 C 1.39132 * 120.00108 * 185.36497 * 10 8 7 12 12 C 1.39509 * 119.83994 * 33.33323 * 11 10 8 13 13 C 1.36361 * 120.17052 * 179.97438 * 12 11 10 14 14 C 1.40875 * 119.82652 * 359.97438 * 13 12 11 15 15 C 1.41149 * 120.15783 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00357 * 336.02797 * 15 14 13 17 17 C 1.39897 * 119.99821 * 155.74417 * 15 14 13 18 18 N 1.30884 * 120.00214 * 341.62656 * 17 15 14 19 19 Si 1.86798 * 119.99891 * 161.61945 * 17 15 14 20 20 H 1.48494 * 109.47162 * 94.73022 * 19 17 15 21 21 H 1.48510 * 109.47048 * 214.72740 * 19 17 15 22 22 H 1.48500 * 109.47114 * 334.72477 * 19 17 15 23 23 C 1.40877 * 119.68157 * 0.28471 * 14 13 12 24 24 C 1.36357 * 119.82651 * 359.43561 * 23 14 13 25 25 C 1.41644 * 106.88862 * 180.36571 * 7 6 5 26 26 N 1.30449 * 108.22627 * 0.22679 * 25 7 6 27 27 N 1.35131 * 125.24717 * 342.37756 * 6 5 4 28 28 C 1.46867 * 124.09161 * 359.43656 * 27 6 5 29 29 H 1.09002 * 109.46773 * 299.74198 * 1 2 3 30 30 H 1.09005 * 109.47155 * 59.73440 * 1 2 3 31 31 H 1.08992 * 109.47723 * 179.74115 * 1 2 3 32 32 H 1.08997 * 109.45853 * 292.91425 * 4 2 1 33 33 H 1.08997 * 109.45460 * 52.87616 * 4 2 1 34 34 H 1.00898 * 111.00747 * 286.81996 * 5 4 2 35 35 H 0.97007 * 119.99740 * 5.36243 * 10 8 7 36 36 H 1.08005 * 119.90967 * 359.95529 * 12 11 10 37 37 H 1.07994 * 120.08513 * 179.97438 * 13 12 11 38 38 H 0.96997 * 119.99884 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.08608 * 179.72280 * 23 14 13 40 40 H 1.07999 * 119.91805 * 180.28026 * 24 23 14 41 41 H 1.07997 * 125.88580 * 180.20876 * 25 7 6 42 42 H 1.09004 * 109.79955 * 104.66042 * 28 27 6 43 43 H 1.08998 * 109.80459 * 225.52442 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0434 -0.7302 -1.2454 5 7 3.5040 -0.5836 -1.3348 6 6 4.1041 -0.9189 -0.1396 7 6 5.4361 -1.2484 0.0767 8 6 6.4996 -1.2966 -0.9333 9 8 6.2477 -1.0363 -2.0950 10 7 7.7553 -1.6292 -0.5743 11 6 8.7853 -1.5669 -1.5076 12 6 8.7615 -0.5903 -2.5035 13 6 9.7677 -0.5228 -3.4213 14 6 10.8334 -1.4422 -3.3617 15 6 11.8788 -1.3784 -4.3078 16 1 11.7075 -0.9231 -5.2720 17 6 13.1387 -1.8996 -3.9944 18 7 13.4662 -2.1135 -2.7454 19 14 14.3535 -2.2905 -5.3585 20 1 15.2659 -1.1355 -5.5547 21 1 15.1462 -3.4900 -4.9867 22 1 13.6140 -2.5569 -6.6185 23 6 10.8478 -2.4291 -2.3564 24 6 9.8376 -2.4806 -1.4421 25 6 5.5729 -1.5228 1.4595 26 7 4.4059 -1.3723 2.0227 27 7 3.4744 -1.0008 1.0532 28 6 2.0445 -0.7290 1.2496 29 1 -0.3633 0.5098 0.8923 30 1 -0.3634 0.5180 -0.8876 31 1 -0.3634 -1.0275 -0.0046 32 1 1.7880 -1.7877 -1.1774 33 1 1.5806 -0.3015 -2.1342 34 1 3.7573 0.3528 -1.6123 35 1 7.9410 -1.9120 0.3349 36 1 7.9438 0.1139 -2.5478 37 1 9.7477 0.2336 -4.1919 38 1 14.3395 -2.4752 -2.5281 39 1 11.6593 -3.1401 -2.3073 40 1 9.8495 -3.2338 -0.6681 41 1 6.4859 -1.8078 1.9611 42 1 1.5046 -1.6672 1.3782 43 1 1.9056 -0.0990 2.1281 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548617316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:32 Heat of formation + Delta-G solvation = 67.337503 kcal Electronic energy + Delta-G solvation = -26473.903782 eV Core-core repulsion = 22713.167692 eV Total energy + Delta-G solvation = -3760.736090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.89372 -39.19094 -37.98012 -36.98052 -34.50845 -34.12475 -32.90170 -31.99851 -29.71763 -29.41811 -28.61219 -26.90604 -25.57443 -24.87935 -22.85075 -21.72315 -21.34385 -20.68493 -19.85306 -19.42621 -17.82797 -17.22657 -16.60545 -16.24031 -15.99871 -15.78168 -15.19075 -15.08344 -14.85119 -14.19682 -13.98622 -13.81739 -13.55843 -13.28478 -12.98094 -12.78087 -12.68076 -12.55914 -12.52116 -12.01344 -11.77846 -11.71153 -11.59496 -11.34190 -11.16502 -11.05530 -10.86376 -10.45145 -10.15744 -9.98808 -9.58658 -9.32453 -9.17190 -9.02306 -8.57263 -8.24296 -7.44069 -6.86469 -6.69579 -4.19718 1.49299 2.05064 2.20703 2.80671 3.11145 3.14808 3.19356 3.25602 3.45429 3.72318 3.97351 3.98057 4.00361 4.10522 4.34727 4.48453 4.69052 4.71986 4.83171 4.85336 4.98152 5.11547 5.16415 5.22672 5.34981 5.43613 5.54231 5.64908 5.81586 6.02357 6.30100 6.39079 6.54288 6.60931 6.90273 7.03485 7.07727 7.12909 7.30185 7.40662 7.50996 7.69471 7.86679 8.03303 8.13230 8.37244 8.48743 8.68431 8.96729 8.97055 9.15497 10.23711 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.034581 B = 0.002299 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.500319 B =12175.699680 C =12820.205788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.146 4.146 3 H 0.086 0.914 4 C 0.047 3.953 5 N -0.578 5.578 6 C 0.326 3.674 7 C -0.285 4.285 8 C 0.580 3.420 9 O -0.530 6.530 10 N -0.650 5.650 11 C 0.003 3.997 12 C -0.076 4.076 13 C -0.216 4.216 14 C 0.104 3.896 15 C -0.459 4.459 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.794 5.794 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.154 4.154 24 C -0.115 4.115 25 C 0.090 3.910 26 N -0.297 5.297 27 N -0.392 5.392 28 C 0.136 3.864 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.376 0.624 35 H 0.392 0.608 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.279 0.721 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.192 0.808 42 H 0.088 0.912 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.354 2.730 8.793 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 H 0.104 0.896 4 C -0.082 4.082 5 N -0.211 5.211 6 C 0.099 3.901 7 C -0.302 4.302 8 C 0.367 3.633 9 O -0.407 6.407 10 N -0.292 5.292 11 C -0.089 4.089 12 C -0.096 4.096 13 C -0.236 4.236 14 C 0.102 3.898 15 C -0.488 4.488 16 H 0.095 0.905 17 C -0.142 4.142 18 N -0.420 5.420 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.174 4.174 24 C -0.135 4.135 25 C -0.098 4.098 26 N -0.117 5.117 27 N -0.179 5.179 28 C 0.015 3.985 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.206 0.794 35 H 0.225 0.775 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.208 0.792 42 H 0.106 0.894 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.038 2.257 8.891 23.871 hybrid contribution 0.944 0.335 -0.179 1.018 sum -21.094 2.592 8.712 22.969 Atomic orbital electron populations 1.21683 0.92086 1.02962 1.03064 1.22300 0.98570 1.00547 0.95364 0.89610 1.22479 0.85737 1.02279 0.97703 1.57287 1.08260 1.32770 1.22769 1.19503 0.91424 0.96612 0.82561 1.19751 0.93230 1.22262 0.94997 1.16920 0.81219 0.78152 0.86963 1.90785 1.81961 1.49509 1.18472 1.42730 1.06508 1.67041 1.12965 1.17121 0.91772 1.02245 0.97769 1.20253 0.97528 0.96453 0.95360 1.20644 0.98451 1.02186 1.02351 1.17648 0.91343 0.89254 0.91600 1.19531 0.94295 1.33754 1.01254 0.90460 1.25908 0.99235 0.93046 0.95998 1.69857 1.21173 1.32489 1.18453 0.86344 0.79896 0.78683 0.82055 1.19663 1.20099 1.18434 1.20868 0.98546 1.00460 0.97536 1.20224 0.95729 0.97444 1.00126 1.24042 0.96522 0.97095 0.92168 1.76952 0.98194 1.23896 1.12631 1.49026 1.08945 1.55195 1.04734 1.22047 0.75544 1.01471 0.99469 0.91751 0.91193 0.91725 0.89419 0.88160 0.79374 0.77506 0.87976 0.88836 0.90986 0.86248 0.89219 0.79169 0.89413 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.45 9.18 37.16 0.34 -0.11 16 2 C -0.15 -0.82 2.94 -90.22 -0.27 -1.08 16 3 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 4 C 0.05 0.35 5.89 -3.61 -0.02 0.33 16 5 N -0.58 -6.80 6.20 -59.60 -0.37 -7.17 16 6 C 0.33 4.41 7.07 -153.80 -1.09 3.33 16 7 C -0.29 -4.41 6.15 -104.91 -0.64 -5.06 16 8 C 0.58 11.01 7.51 -12.83 -0.10 10.91 16 9 O -0.53 -11.81 14.02 5.20 0.07 -11.73 16 10 N -0.65 -12.20 5.29 -10.90 -0.06 -12.26 16 11 C 0.00 0.08 6.29 -83.60 -0.53 -0.45 16 12 C -0.08 -1.87 8.57 -39.78 -0.34 -2.21 16 13 C -0.22 -5.62 9.74 -39.26 -0.38 -6.00 16 14 C 0.10 2.85 5.57 -106.80 -0.60 2.26 16 15 C -0.46 -12.41 9.03 -37.86 -0.34 -12.75 16 16 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 17 C 0.08 1.92 5.12 -17.33 -0.09 1.83 16 18 N -0.79 -20.59 10.98 55.55 0.61 -19.98 16 19 Si 0.91 18.88 29.60 -169.99 -5.03 13.85 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 C -0.15 -4.05 8.64 -39.26 -0.34 -4.39 16 24 C -0.11 -2.71 9.89 -39.78 -0.39 -3.10 16 25 C 0.09 1.17 11.50 -16.84 -0.19 0.98 16 26 N -0.30 -3.95 12.52 30.94 0.39 -3.56 16 27 N -0.39 -4.64 4.03 -59.57 -0.24 -4.88 16 28 C 0.14 1.01 6.73 -3.56 -0.02 0.99 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 33 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.38 4.10 8.82 -39.29 -0.35 3.75 16 35 H 0.39 5.90 7.78 -40.82 -0.32 5.58 16 36 H 0.10 2.47 6.38 -52.48 -0.34 2.13 16 37 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 39 H 0.12 3.20 6.17 -52.49 -0.32 2.88 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 41 H 0.19 1.85 7.51 -52.49 -0.39 1.45 16 42 H 0.09 0.57 8.09 -51.93 -0.42 0.15 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 357.85 15.07 5.39 5.39 Total: -1.00 -33.49 357.85 -9.73 -43.22 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -5.49 Total: 11.65 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -5.00 Total: -14.54 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.33 Total: -47.85 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.07 Total: -11.73 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.49 -9.73 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548617316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.558 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds