Wall clock time and date at job start Tue Mar 31 2020 15:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47064 * 2 1 4 4 C 1.50694 * 109.47689 * 120.01029 * 2 1 3 5 5 H 1.08003 * 120.00291 * 119.99414 * 4 2 1 6 6 C 1.37881 * 119.99571 * 299.99485 * 4 2 1 7 7 N 1.31510 * 120.00118 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99868 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47079 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46972 * 119.99979 * 8 6 4 11 11 H 1.48497 * 109.47001 * 240.00137 * 8 6 4 12 12 N 1.46505 * 109.46761 * 240.00828 * 2 1 3 13 13 C 1.34780 * 120.00082 * 84.99773 * 12 2 1 14 14 O 1.21568 * 119.99898 * 0.02562 * 13 12 2 15 15 N 1.34775 * 119.99982 * 180.02562 * 13 12 2 16 16 C 1.39006 * 120.00207 * 174.92144 * 15 13 12 17 17 C 1.39545 * 120.52758 * 185.06364 * 16 15 13 18 18 C 1.38161 * 118.33958 * 179.97438 * 17 16 15 19 19 N 1.32533 * 119.18712 * 359.97438 * 18 17 16 20 20 C 1.31771 * 120.99281 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.08324 * 180.02562 * 20 19 18 22 22 C 1.50702 * 109.47012 * 90.00187 * 21 20 19 23 23 C 1.38237 * 119.99852 * 269.72390 * 22 21 20 24 24 C 1.38234 * 119.99552 * 179.77184 * 23 22 21 25 25 C 1.38229 * 120.00469 * 0.47798 * 24 23 22 26 26 C 1.38238 * 119.99767 * 359.79784 * 25 24 23 27 27 C 1.38230 * 120.00027 * 359.95352 * 26 25 24 28 28 N 1.31773 * 121.82817 * 359.73737 * 20 19 18 29 29 H 1.08999 * 109.47617 * 59.99189 * 1 2 3 30 30 H 1.09009 * 109.46707 * 299.98982 * 1 2 3 31 31 H 1.09001 * 109.47064 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99900 * 179.97438 * 7 6 4 33 33 H 0.97000 * 119.99845 * 265.00128 * 12 2 1 34 34 H 0.97002 * 120.00057 * 354.91337 * 15 13 12 35 35 H 1.08003 * 120.82965 * 359.97438 * 17 16 15 36 36 H 1.07997 * 120.40793 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.46895 * 209.99539 * 21 20 19 38 38 H 1.08993 * 109.47186 * 329.99879 * 21 20 19 39 39 H 1.07992 * 120.00065 * 359.97438 * 23 22 21 40 40 H 1.08001 * 119.99600 * 180.25121 * 24 23 22 41 41 H 1.08002 * 120.00346 * 179.77470 * 25 24 23 42 42 H 1.08003 * 119.99923 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.00007 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7106 1.2302 5 1 2.6533 -1.5887 1.1310 6 6 1.6995 -0.2396 2.4826 7 7 0.9430 0.8293 2.6035 8 14 2.3217 -1.1208 4.0077 9 1 3.1467 -2.2874 3.6034 10 1 3.1470 -0.1880 4.8163 11 1 1.1665 -1.5872 4.8159 12 7 2.0183 -0.6905 -1.1963 13 6 2.1469 -0.0180 -2.3573 14 8 1.8582 1.1617 -2.4116 15 7 2.5956 -0.6533 -3.4579 16 6 2.6286 0.0105 -4.6788 17 6 2.9908 -0.6663 -5.8441 18 6 3.0078 0.0374 -7.0329 19 7 2.6818 1.3220 -7.0283 20 6 2.3432 1.9321 -5.9105 21 6 1.9798 3.3940 -5.9549 22 6 0.4986 3.5363 -6.1933 23 6 0.0112 3.6190 -7.4843 24 6 -1.3479 3.7449 -7.7031 25 6 -2.2187 3.7979 -6.6309 26 6 -1.7307 3.7210 -5.3398 27 6 -0.3721 3.5900 -5.1210 28 7 2.3082 1.2981 -4.7558 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5137 0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 0.7085 1.1604 3.4846 33 1 2.2489 -1.6317 -1.1529 34 1 2.8956 -1.5738 -3.3982 35 1 3.2512 -1.7141 -5.8174 36 1 3.2834 -0.4532 -7.9547 37 1 2.2417 3.8624 -5.0061 38 1 2.5263 3.8798 -6.7631 39 1 0.6919 3.5821 -8.3219 40 1 -1.7291 3.8054 -8.7118 41 1 -3.2802 3.8999 -6.8018 42 1 -2.4110 3.7628 -4.5020 43 1 0.0090 3.5294 -4.1123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647146619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:43 Heat of formation + Delta-G solvation = 54.289220 kcal Electronic energy + Delta-G solvation = -26655.655570 eV Core-core repulsion = 22894.353664 eV Total energy + Delta-G solvation = -3761.301906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.17605 -39.43101 -38.95729 -35.70736 -34.52216 -33.83457 -32.75458 -32.05819 -30.80868 -30.71638 -28.67035 -27.33619 -25.29178 -24.36983 -23.13666 -22.47492 -21.54624 -21.02633 -19.97661 -18.55388 -17.80046 -16.84176 -16.71551 -15.97353 -15.52680 -15.44720 -15.11429 -15.01800 -14.94245 -14.53712 -14.12023 -14.02686 -13.54945 -13.31764 -13.22532 -13.00534 -12.42924 -12.34016 -12.03807 -11.90329 -11.43668 -11.15441 -11.10571 -10.94572 -10.89478 -10.74139 -10.69645 -10.32242 -10.26767 -9.87256 -9.76061 -9.07267 -8.83975 -8.74954 -8.71608 -8.62418 -8.56372 -7.92713 -6.15669 -4.24960 0.95165 1.30173 1.40477 1.48812 2.77890 3.21434 3.29474 3.31776 3.63603 3.76823 4.07086 4.16346 4.20514 4.31732 4.66966 4.87721 4.91636 4.94136 5.06477 5.09600 5.17175 5.21405 5.33056 5.39541 5.55253 5.58784 5.77364 5.79531 6.01899 6.15427 6.21639 6.50189 6.59976 6.60871 6.72029 6.75051 6.88808 6.95303 7.07336 7.12643 7.27091 7.41921 7.58782 7.76764 7.92774 8.11880 8.33128 8.68355 8.81421 9.20682 9.43506 10.90371 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.003043 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.396702 B = 9198.951431 C =10654.364902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.282 3.718 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.719 5.719 13 C 0.679 3.321 14 O -0.530 6.530 15 N -0.668 5.668 16 C 0.435 3.565 17 C -0.282 4.282 18 C 0.169 3.831 19 N -0.549 5.549 20 C 0.354 3.646 21 C -0.011 4.011 22 C -0.081 4.081 23 C -0.106 4.106 24 C -0.129 4.129 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.095 4.095 28 N -0.499 5.499 29 H 0.015 0.985 30 H 0.091 0.909 31 H 0.025 0.975 32 H 0.264 0.736 33 H 0.385 0.615 34 H 0.411 0.589 35 H 0.144 0.856 36 H 0.167 0.833 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 -0.448 -20.100 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.180 3.820 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.372 5.372 13 C 0.379 3.621 14 O -0.401 6.401 15 N -0.317 5.317 16 C 0.192 3.808 17 C -0.309 4.309 18 C 0.005 3.995 19 N -0.266 5.266 20 C 0.085 3.915 21 C -0.050 4.050 22 C -0.082 4.082 23 C -0.124 4.124 24 C -0.147 4.147 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.113 4.113 28 N -0.219 5.219 29 H 0.034 0.966 30 H 0.109 0.891 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.217 0.783 34 H 0.248 0.752 35 H 0.162 0.838 36 H 0.184 0.816 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.203 1.704 -19.797 19.871 hybrid contribution 0.749 -2.610 1.031 2.905 sum 0.546 -0.906 -18.765 18.795 Atomic orbital electron populations 1.22100 0.98499 0.99064 1.00965 1.18691 0.90840 0.93757 0.78686 0.93210 1.21233 1.32537 1.13289 0.90226 0.92041 1.24880 0.94804 0.94959 0.99035 1.69911 1.35745 1.22405 1.23838 0.86383 0.78596 0.79494 0.82543 1.19781 1.20848 1.20851 1.45931 1.68817 1.13265 1.09160 1.16301 0.79715 0.85878 0.80247 1.91001 1.53299 1.12994 1.82823 1.43097 1.65997 1.16424 1.06132 1.18444 0.88319 0.88804 0.85219 1.22181 1.12379 1.02860 0.93470 1.22846 0.90132 0.89403 0.97159 1.68190 1.16759 1.10804 1.30896 1.22844 0.88983 0.96742 0.82896 1.19332 0.92809 0.88031 1.04825 1.19557 0.94205 1.00942 0.93460 1.21065 0.95475 0.99540 0.96314 1.21073 0.93467 1.01482 0.98724 1.21154 0.99493 1.00492 0.92919 1.21200 0.95610 1.00278 0.97003 1.21311 0.93144 0.97243 0.99597 1.68347 1.18150 1.07254 1.28167 0.96569 0.89072 0.95574 0.92565 0.78316 0.75236 0.83848 0.81634 0.87911 0.88396 0.85863 0.86352 0.86415 0.86006 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 2 C 0.28 7.07 2.56 -69.08 -0.18 6.90 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -13.91 8.73 -34.44 -0.30 -14.21 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.56 11.32 55.43 0.63 -23.93 16 8 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.72 -14.62 5.07 -59.82 -0.30 -14.93 16 13 C 0.68 13.73 8.49 -86.92 -0.74 12.99 16 14 O -0.53 -12.89 14.31 5.31 0.08 -12.81 16 15 N -0.67 -10.13 5.39 -15.67 -0.08 -10.21 16 16 C 0.43 6.74 7.46 -154.43 -1.15 5.59 16 17 C -0.28 -3.19 10.04 -39.12 -0.39 -3.58 16 18 C 0.17 1.85 11.29 -17.28 -0.20 1.66 16 19 N -0.55 -7.44 10.33 -10.80 -0.11 -7.55 16 20 C 0.35 5.44 6.88 -157.23 -1.08 4.36 16 21 C -0.01 -0.15 5.78 -29.03 -0.17 -0.32 16 22 C -0.08 -1.10 5.12 -104.62 -0.54 -1.63 16 23 C -0.11 -1.27 9.70 -39.58 -0.38 -1.65 16 24 C -0.13 -1.44 10.05 -39.59 -0.40 -1.84 16 25 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 26 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 27 C -0.09 -1.40 9.70 -39.58 -0.38 -1.78 16 28 N -0.50 -8.91 7.94 -9.89 -0.08 -8.98 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 2.45 6.07 -51.92 -0.32 2.13 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.38 6.56 8.56 -40.82 -0.35 6.21 16 34 H 0.41 4.41 8.74 -40.82 -0.36 4.05 16 35 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 36 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.10 1.41 8.09 -51.93 -0.42 0.99 16 38 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 43 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -33.44 371.51 -11.35 -44.79 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.60 Total: 11.66 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -6.45 Total: 1.03 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: 0.05 Total: -65.61 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.44 -11.35 -44.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647146619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.076 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds