Wall clock time and date at job start Tue Mar 31 2020 15:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47064 * 2 1 4 4 C 1.50694 * 109.47689 * 120.01029 * 2 1 3 5 5 H 1.08003 * 120.00291 * 119.99414 * 4 2 1 6 6 C 1.37881 * 119.99571 * 299.99485 * 4 2 1 7 7 N 1.31510 * 120.00118 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99868 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47079 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46972 * 119.99979 * 8 6 4 11 11 H 1.48497 * 109.47001 * 240.00137 * 8 6 4 12 12 N 1.46505 * 109.46761 * 240.00828 * 2 1 3 13 13 C 1.34780 * 120.00082 * 84.99773 * 12 2 1 14 14 O 1.21568 * 119.99898 * 0.02562 * 13 12 2 15 15 N 1.34775 * 119.99982 * 180.02562 * 13 12 2 16 16 C 1.39006 * 120.00207 * 174.92144 * 15 13 12 17 17 C 1.39545 * 120.52758 * 185.06364 * 16 15 13 18 18 C 1.38161 * 118.33958 * 179.97438 * 17 16 15 19 19 N 1.32533 * 119.18712 * 359.97438 * 18 17 16 20 20 C 1.31771 * 120.99281 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.08324 * 180.02562 * 20 19 18 22 22 C 1.50702 * 109.47012 * 90.00187 * 21 20 19 23 23 C 1.38237 * 119.99852 * 269.72390 * 22 21 20 24 24 C 1.38234 * 119.99552 * 179.77184 * 23 22 21 25 25 C 1.38229 * 120.00469 * 0.47798 * 24 23 22 26 26 C 1.38238 * 119.99767 * 359.79784 * 25 24 23 27 27 C 1.38230 * 120.00027 * 359.95352 * 26 25 24 28 28 N 1.31773 * 121.82817 * 359.73737 * 20 19 18 29 29 H 1.08999 * 109.47617 * 59.99189 * 1 2 3 30 30 H 1.09009 * 109.46707 * 299.98982 * 1 2 3 31 31 H 1.09001 * 109.47064 * 180.02562 * 1 2 3 32 32 H 0.97003 * 119.99900 * 179.97438 * 7 6 4 33 33 H 0.97000 * 119.99845 * 265.00128 * 12 2 1 34 34 H 0.97002 * 120.00057 * 354.91337 * 15 13 12 35 35 H 1.08003 * 120.82965 * 359.97438 * 17 16 15 36 36 H 1.07997 * 120.40793 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.46895 * 209.99539 * 21 20 19 38 38 H 1.08993 * 109.47186 * 329.99879 * 21 20 19 39 39 H 1.07992 * 120.00065 * 359.97438 * 23 22 21 40 40 H 1.08001 * 119.99600 * 180.25121 * 24 23 22 41 41 H 1.08002 * 120.00346 * 179.77470 * 25 24 23 42 42 H 1.08003 * 119.99923 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.00007 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7106 1.2302 5 1 2.6533 -1.5887 1.1310 6 6 1.6995 -0.2396 2.4826 7 7 0.9430 0.8293 2.6035 8 14 2.3217 -1.1208 4.0077 9 1 3.1467 -2.2874 3.6034 10 1 3.1470 -0.1880 4.8163 11 1 1.1665 -1.5872 4.8159 12 7 2.0183 -0.6905 -1.1963 13 6 2.1469 -0.0180 -2.3573 14 8 1.8582 1.1617 -2.4116 15 7 2.5956 -0.6533 -3.4579 16 6 2.6286 0.0105 -4.6788 17 6 2.9908 -0.6663 -5.8441 18 6 3.0078 0.0374 -7.0329 19 7 2.6818 1.3220 -7.0283 20 6 2.3432 1.9321 -5.9105 21 6 1.9798 3.3940 -5.9549 22 6 0.4986 3.5363 -6.1933 23 6 0.0112 3.6190 -7.4843 24 6 -1.3479 3.7449 -7.7031 25 6 -2.2187 3.7979 -6.6309 26 6 -1.7307 3.7210 -5.3398 27 6 -0.3721 3.5900 -5.1210 28 7 2.3082 1.2981 -4.7558 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5137 0.8902 31 1 -0.3633 -1.0277 0.0005 32 1 0.7085 1.1604 3.4846 33 1 2.2489 -1.6317 -1.1529 34 1 2.8956 -1.5738 -3.3982 35 1 3.2512 -1.7141 -5.8174 36 1 3.2834 -0.4532 -7.9547 37 1 2.2417 3.8624 -5.0061 38 1 2.5263 3.8798 -6.7631 39 1 0.6919 3.5821 -8.3219 40 1 -1.7291 3.8054 -8.7118 41 1 -3.2802 3.8999 -6.8018 42 1 -2.4110 3.7628 -4.5020 43 1 0.0090 3.5294 -4.1123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647146619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:42 Heat of formation + Delta-G solvation = 33.459059 kcal Electronic energy + Delta-G solvation = -26656.558833 eV Core-core repulsion = 22894.353664 eV Total energy + Delta-G solvation = -3762.205170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.30461 -40.85285 -40.01298 -37.25106 -36.18200 -34.85687 -34.46708 -33.44616 -31.87787 -31.77635 -30.47201 -28.34769 -27.35886 -25.56676 -24.21724 -23.49234 -23.10611 -22.07416 -21.68869 -20.12105 -19.03861 -18.24176 -17.73546 -17.56502 -16.97124 -16.72849 -16.34470 -16.16883 -15.98632 -15.93618 -15.53140 -15.28768 -15.08189 -14.42085 -14.38832 -14.28308 -14.03756 -13.77058 -13.32530 -13.06418 -13.04375 -12.96508 -12.76146 -12.51226 -12.28354 -12.13116 -12.08750 -11.86994 -11.73911 -11.33561 -11.11276 -10.99891 -10.62832 -9.96653 -9.94629 -9.83217 -9.68383 -9.55231 -8.18570 -6.36107 -0.07845 0.26728 0.43052 0.49129 1.42583 1.44448 1.49975 1.58215 2.19976 2.40184 2.73573 2.90606 3.04514 3.12477 3.22538 3.51828 3.80292 3.89901 3.97561 4.15623 4.25041 4.29507 4.37718 4.49054 4.51247 4.61272 4.71764 4.79336 4.79918 4.90149 5.07363 5.08124 5.15128 5.19240 5.33062 5.55300 5.55933 5.59626 5.61162 5.63225 5.70780 5.74811 5.94642 6.07615 6.11023 6.32439 6.71843 7.08614 7.31641 7.37693 7.68318 8.88222 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.003043 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.396702 B = 9198.951431 C =10654.364902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.292 3.708 3 H -0.003 1.003 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.258 1.258 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.713 5.713 13 C 0.680 3.320 14 O -0.580 6.580 15 N -0.651 5.651 16 C 0.398 3.602 17 C -0.256 4.256 18 C 0.168 3.832 19 N -0.548 5.548 20 C 0.337 3.663 21 C -0.009 4.009 22 C -0.089 4.089 23 C -0.107 4.107 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.138 4.138 27 C -0.124 4.124 28 N -0.548 5.548 29 H 0.006 0.994 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.434 0.566 35 H 0.190 0.810 36 H 0.217 0.783 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.144 0.856 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.124 0.876 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 -3.126 -22.893 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.188 3.812 3 H 0.015 0.985 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.211 1.211 11 H -0.204 1.204 12 N -0.367 5.367 13 C 0.380 3.620 14 O -0.454 6.454 15 N -0.302 5.302 16 C 0.157 3.843 17 C -0.282 4.282 18 C 0.004 3.996 19 N -0.265 5.265 20 C 0.069 3.931 21 C -0.048 4.048 22 C -0.090 4.090 23 C -0.124 4.124 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.156 4.156 27 C -0.143 4.143 28 N -0.269 5.269 29 H 0.025 0.975 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.239 0.761 34 H 0.274 0.726 35 H 0.207 0.793 36 H 0.233 0.767 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.164 0.836 42 H 0.142 0.858 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.488 -1.043 -22.650 22.679 hybrid contribution 0.557 -1.762 1.748 2.544 sum 1.044 -2.805 -20.902 21.115 Atomic orbital electron populations 1.21905 0.98517 0.99358 0.99324 1.18226 0.90745 0.91616 0.80620 0.98466 1.21555 1.32626 1.13631 0.90527 0.90573 1.25816 0.94872 0.95584 1.02362 1.70068 1.36946 1.23968 1.24583 0.85261 0.78063 0.78496 0.78277 1.18183 1.21108 1.20436 1.45482 1.69018 1.13949 1.08258 1.16422 0.79233 0.85323 0.81063 1.90983 1.55220 1.15365 1.83841 1.42621 1.65588 1.17173 1.04854 1.18909 0.90263 0.88909 0.86198 1.22618 1.09410 1.04650 0.91471 1.23753 0.88491 0.88457 0.98875 1.68252 1.16314 1.12267 1.29696 1.22995 0.89886 0.97313 0.82922 1.19340 0.93218 0.87752 1.04514 1.19632 0.94034 1.01335 0.94007 1.21317 0.96491 0.98837 0.95795 1.21503 0.92934 0.99532 1.00167 1.21482 1.01147 0.99400 0.91999 1.21352 0.94921 1.00845 0.98467 1.21184 0.94506 1.00001 0.98571 1.68204 1.19480 1.09213 1.30046 0.97454 0.91414 0.94051 0.92537 0.76101 0.72584 0.79308 0.76671 0.90128 0.86094 0.83783 0.82920 0.83627 0.85811 0.88539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.17 16 2 C 0.29 15.25 2.56 44.24 0.11 15.36 16 3 H 0.00 -0.16 7.58 -2.39 -0.02 -0.18 16 4 C -0.55 -28.63 8.73 25.60 0.22 -28.41 16 5 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -52.82 11.32 21.45 0.24 -52.58 16 8 Si 0.97 41.74 29.54 68.60 2.03 43.77 16 9 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 12 N -0.71 -29.58 5.07 -461.42 -2.34 -31.92 16 13 C 0.68 28.50 8.49 179.05 1.52 30.02 16 14 O -0.58 -30.30 14.31 -3.93 -0.06 -30.36 16 15 N -0.65 -19.46 5.39 -321.75 -1.73 -21.20 16 16 C 0.40 12.10 7.46 133.01 0.99 13.09 16 17 C -0.26 -4.90 10.04 22.57 0.23 -4.68 16 18 C 0.17 3.04 11.29 84.57 0.95 4.00 16 19 N -0.55 -13.79 10.33 -188.08 -1.94 -15.73 16 20 C 0.34 10.54 6.88 138.76 0.95 11.49 16 21 C -0.01 -0.27 5.78 29.10 0.17 -0.10 16 22 C -0.09 -2.53 5.12 -19.86 -0.10 -2.63 16 23 C -0.11 -2.41 9.70 22.27 0.22 -2.19 16 24 C -0.12 -2.46 10.05 22.27 0.22 -2.23 16 25 C -0.12 -2.68 10.05 22.27 0.22 -2.46 16 26 C -0.14 -3.83 10.05 22.27 0.22 -3.61 16 27 C -0.12 -4.04 9.70 22.27 0.22 -3.83 16 28 N -0.55 -20.38 7.94 -185.20 -1.47 -21.85 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 3.82 6.07 -2.38 -0.01 3.81 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.40 13.47 8.56 -92.71 -0.79 12.67 16 34 H 0.43 8.44 8.74 -92.71 -0.81 7.63 16 35 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.08 2.54 8.09 -2.39 -0.02 2.52 16 38 H 0.12 2.67 8.08 -2.39 -0.02 2.65 16 39 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 42 H 0.12 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.10 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -78.81 371.51 1.44 -77.36 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.55 Total: 33.66 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 7.27 Total: 18.85 kcal Atomic # 7 Polarization: -136.04 SS G_CDS: -7.25 Total: -143.28 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.06 Total: -30.36 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -78.81 1.44 -77.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647146619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.824 kcal (2) G-P(sol) polarization free energy of solvation -78.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds