Wall clock time and date at job start Tue Mar 31 2020 14:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.47190 * 2 1 4 4 N 1.46505 * 109.46909 * 119.99760 * 2 1 3 5 5 C 1.34769 * 119.99856 * 274.99829 * 4 2 1 6 6 O 1.21280 * 120.00371 * 0.02562 * 5 4 2 7 7 C 1.50705 * 119.99954 * 179.97438 * 5 4 2 8 8 C 1.53777 * 113.61719 * 279.14057 * 7 5 4 9 9 C 1.53952 * 87.02181 * 220.04533 * 8 7 5 10 10 C 1.53783 * 113.61556 * 181.53032 * 7 5 4 11 11 C 1.52994 * 109.47111 * 239.99613 * 2 1 3 12 12 C 1.53501 * 114.20706 * 174.87334 * 11 2 1 13 13 N 1.47070 * 87.98494 * 220.34529 * 12 11 2 14 14 C 1.34775 * 136.06099 * 207.08379 * 13 12 11 15 15 O 1.21287 * 119.99300 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00687 * 180.02562 * 14 13 12 17 17 S 1.80995 * 109.47602 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00259 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99773 * 0.02562 * 18 17 16 20 20 C 1.38793 * 120.00001 * 180.02562 * 18 17 16 21 21 N 1.31629 * 120.00045 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00115 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46780 * 59.99768 * 22 20 18 24 24 H 1.48498 * 109.47406 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46944 * 300.00584 * 22 20 18 26 26 C 1.47067 * 87.88696 * 27.11773 * 13 12 11 27 27 H 1.09005 * 109.47298 * 304.94590 * 1 2 3 28 28 H 1.08997 * 109.47258 * 64.94551 * 1 2 3 29 29 H 1.09004 * 109.47192 * 184.94164 * 1 2 3 30 30 H 0.97006 * 119.99758 * 94.99891 * 4 2 1 31 31 H 1.09005 * 112.84797 * 50.33450 * 7 5 4 32 32 H 1.09006 * 113.61491 * 334.56752 * 8 7 5 33 33 H 1.08998 * 113.61737 * 105.46824 * 8 7 5 34 34 H 1.09000 * 113.53919 * 270.81056 * 9 8 7 35 35 H 1.08995 * 113.67018 * 139.92860 * 9 8 7 36 36 H 1.08999 * 113.61020 * 254.53343 * 10 7 5 37 37 H 1.08992 * 113.61326 * 25.35137 * 10 7 5 38 38 H 1.08997 * 113.41697 * 308.07217 * 11 2 1 39 39 H 1.08996 * 113.46957 * 105.56897 * 12 11 2 40 40 H 1.09000 * 113.46536 * 335.12509 * 12 11 2 41 41 H 1.09004 * 109.46913 * 300.00320 * 16 14 13 42 42 H 1.09002 * 109.46907 * 59.99741 * 16 14 13 43 43 H 0.97005 * 119.99934 * 180.02562 * 21 20 18 44 44 H 1.09008 * 113.46687 * 87.65369 * 26 13 12 45 45 H 1.08997 * 113.47278 * 218.04106 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1585 2.4117 7 6 2.6488 -0.7287 3.5878 8 6 1.5654 -1.5444 4.3130 9 6 2.1844 -1.0440 5.6308 10 6 2.7031 0.1667 4.8369 11 6 2.0400 -0.7213 -1.2491 12 6 3.5645 -0.6773 -1.4231 13 7 3.3422 -0.4657 -2.8614 14 6 4.0235 -0.7191 -3.9963 15 8 5.1101 -1.2554 -3.9442 16 6 3.4359 -0.3351 -5.3298 17 16 4.5814 -0.8022 -6.6510 18 6 3.6687 -0.2546 -8.0552 19 1 2.7026 0.2101 -7.9236 20 6 4.1912 -0.4202 -9.3303 21 7 5.3684 -0.9870 -9.4906 22 14 3.2233 0.1597 -10.8190 23 1 2.9856 1.6220 -10.7158 24 1 3.9940 -0.1311 -12.0546 25 1 1.9205 -0.5511 -10.8699 26 6 2.0495 0.1449 -2.5164 27 1 -0.3634 0.5887 0.8424 28 1 -0.3633 0.4352 -0.9309 29 1 -0.3634 -1.0239 0.0885 30 1 2.2490 -1.6318 1.1527 31 1 3.5686 -1.2857 3.4095 32 1 0.5535 -1.1783 4.1391 33 1 1.6581 -2.6206 4.1669 34 1 2.9767 -1.6883 6.0118 35 1 1.4466 -0.7846 6.3900 36 1 3.7130 0.4698 5.1132 37 1 2.0039 1.0022 4.8059 38 1 1.6029 -1.7102 -1.3871 39 1 4.0550 -1.6234 -1.1943 40 1 4.0336 0.1723 -0.9268 41 1 2.4870 -0.8526 -5.4712 42 1 3.2700 0.7419 -5.3571 43 1 5.7338 -1.1024 -10.3818 44 1 2.1152 1.2135 -2.3111 45 1 1.2522 -0.1013 -3.2176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756128221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:41 Heat of formation + Delta-G solvation = -22.442067 kcal Electronic energy + Delta-G solvation = -24600.343539 eV Core-core repulsion = 20938.865515 eV Total energy + Delta-G solvation = -3661.478024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.96761 -40.20297 -38.18132 -37.47772 -35.34383 -32.44467 -31.68354 -30.20089 -27.81366 -27.18903 -26.10842 -25.98303 -25.47594 -23.70177 -21.35098 -20.94768 -19.71826 -19.09643 -17.88887 -17.68334 -16.86176 -16.58569 -15.94884 -15.64952 -15.40627 -15.04097 -14.81687 -14.75463 -14.23002 -14.01285 -13.88017 -13.27966 -12.94201 -12.91833 -12.86061 -12.71301 -12.63277 -12.51963 -12.45403 -11.97098 -11.83222 -11.63907 -11.25391 -11.06603 -11.04849 -11.00353 -10.87407 -10.83851 -10.77691 -9.97696 -9.84753 -9.54013 -9.34794 -9.07406 -8.64490 -8.26544 -6.52551 -6.22861 -3.94137 2.30150 2.71490 2.75863 3.02369 3.22583 3.23292 3.27975 3.53900 3.98157 4.03715 4.12802 4.18885 4.27065 4.35016 4.36475 4.57009 4.73823 4.76280 4.86689 5.03894 5.10438 5.12179 5.17690 5.20408 5.26728 5.30252 5.31309 5.38144 5.41119 5.44228 5.52112 5.54643 5.60718 5.64726 5.78840 5.86454 5.94159 5.96329 5.98957 6.11934 6.14802 7.15803 7.57834 7.81665 7.91060 8.33607 8.50454 9.22130 10.84517 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.035256 B = 0.001907 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.989223 B =14680.717376 C =15158.873409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.093 0.907 4 N -0.724 5.724 5 C 0.524 3.476 6 O -0.539 6.539 7 C -0.141 4.141 8 C -0.124 4.124 9 C -0.143 4.143 10 C -0.118 4.118 11 C -0.139 4.139 12 C 0.113 3.887 13 N -0.653 5.653 14 C 0.563 3.437 15 O -0.514 6.514 16 C -0.145 4.145 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.274 1.274 26 C 0.113 3.887 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.401 0.599 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.086 0.914 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 -0.740 28.510 30.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.049 3.951 3 H 0.111 0.889 4 N -0.375 5.375 5 C 0.311 3.689 6 O -0.416 6.416 7 C -0.162 4.162 8 C -0.161 4.161 9 C -0.180 4.180 10 C -0.156 4.156 11 C -0.158 4.158 12 C -0.011 4.011 13 N -0.392 5.392 14 C 0.352 3.648 15 O -0.388 6.388 16 C -0.295 4.295 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.011 4.011 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.236 0.764 31 H 0.132 0.868 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.129 0.871 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.480 -0.789 28.243 29.802 hybrid contribution -1.724 0.543 -1.174 2.155 sum -11.204 -0.246 27.069 29.297 Atomic orbital electron populations 1.22154 0.94662 1.02392 1.02839 1.20878 0.94415 0.97196 0.82600 0.88903 1.46080 1.67687 1.14190 1.09548 1.20534 0.77103 0.87103 0.84177 1.90699 1.49980 1.16029 1.84851 1.22833 1.00986 0.99736 0.92639 1.22851 0.97873 0.99695 0.95721 1.22867 1.00710 0.97943 0.96513 1.22799 1.02639 0.97163 0.92999 1.23355 0.96974 1.01092 0.94391 1.22849 0.94923 1.02195 0.81087 1.49615 1.21866 1.62335 1.05391 1.19952 0.83902 0.77525 0.83386 1.90719 1.20067 1.41851 1.86119 1.23472 1.05402 1.04553 0.96079 1.85403 1.24053 1.79482 0.94407 1.22815 1.07044 1.46312 0.92267 0.90951 1.24992 0.95210 0.94802 0.98536 1.70009 1.16333 1.40435 1.23482 0.86216 0.79555 0.79185 0.80495 1.19917 1.20774 1.19927 1.22900 0.86516 0.97789 0.93925 0.91994 0.91179 0.92255 0.76441 0.86831 0.89711 0.90599 0.89831 0.90964 0.90969 0.88729 0.87054 0.90462 0.90112 0.89273 0.89285 0.92098 0.89566 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.48 37.16 0.35 -0.71 16 2 C 0.15 1.09 2.34 -67.93 -0.16 0.93 16 3 H 0.09 0.82 7.43 -51.93 -0.39 0.44 16 4 N -0.72 -4.60 4.96 -53.81 -0.27 -4.87 16 5 C 0.52 4.38 7.32 -10.99 -0.08 4.30 16 6 O -0.54 -6.66 15.57 5.56 0.09 -6.57 16 7 C -0.14 -0.82 4.14 -90.96 -0.38 -1.19 16 8 C -0.12 -0.57 7.64 -25.83 -0.20 -0.77 16 9 C -0.14 -0.65 8.09 -25.83 -0.21 -0.86 16 10 C -0.12 -0.74 7.40 -25.92 -0.19 -0.94 16 11 C -0.14 -1.04 3.50 -90.10 -0.32 -1.35 16 12 C 0.11 1.19 8.07 -8.49 -0.07 1.12 16 13 N -0.65 -9.27 3.69 -185.18 -0.68 -9.96 16 14 C 0.56 11.05 8.10 -10.99 -0.09 10.96 16 15 O -0.51 -12.20 16.64 5.55 0.09 -12.10 16 16 C -0.14 -3.01 5.98 36.00 0.22 -2.79 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 22 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.11 1.08 7.98 -8.49 -0.07 1.01 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.40 1.68 8.60 -40.82 -0.35 1.33 16 31 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.76 7.45 -51.93 -0.39 0.37 16 38 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 41 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 42 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.09 0.73 8.00 -51.92 -0.42 0.32 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 390.20 15.07 5.88 5.88 Total: -1.00 -36.84 390.20 -9.80 -46.64 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -7.42 Total: -2.75 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -0.99 Total: -3.32 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: -0.22 Total: -40.30 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.18 Total: -18.67 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.84 -9.80 -46.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756128221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.201 kcal (2) G-P(sol) polarization free energy of solvation -36.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds