Wall clock time and date at job start Tue Mar 31 2020 14:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00237 * 2 1 4 4 C 1.52997 * 109.47172 * 124.99758 * 3 2 1 5 5 C 1.50706 * 109.47017 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99977 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99631 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99407 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47246 * 35.00545 * 8 7 5 10 10 C 1.52999 * 109.47275 * 275.00318 * 8 7 5 11 11 C 1.53002 * 109.46793 * 155.00387 * 8 7 5 12 12 C 1.53492 * 114.20509 * 180.02562 * 11 8 7 13 13 N 1.47066 * 87.98733 * 139.65484 * 12 11 8 14 14 C 1.34780 * 136.06263 * 152.62087 * 13 12 11 15 15 O 1.21282 * 119.99658 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00120 * 180.02562 * 14 13 12 17 17 S 1.81007 * 109.46872 * 179.97438 * 16 14 13 18 18 C 1.76197 * 99.99938 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99872 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00169 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99597 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00036 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47339 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46964 * 120.00072 * 22 20 18 25 25 H 1.48504 * 109.46965 * 239.99937 * 22 20 18 26 26 C 1.47067 * 87.88528 * 332.87766 * 13 12 11 27 27 H 1.07998 * 120.00278 * 180.02562 * 1 2 3 28 28 H 1.08004 * 119.99831 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99645 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47248 * 4.99484 * 3 2 1 31 31 H 1.09002 * 109.46394 * 244.99645 * 3 2 1 32 32 H 1.09000 * 109.46968 * 60.00101 * 4 3 2 33 33 H 1.08996 * 109.47172 * 300.00166 * 4 3 2 34 34 H 0.96997 * 120.00284 * 0.02562 * 7 5 4 35 35 H 1.08996 * 109.47081 * 60.00162 * 10 8 7 36 36 H 1.09004 * 109.47005 * 180.02562 * 10 8 7 37 37 H 1.09000 * 109.47169 * 300.00274 * 10 8 7 38 38 H 1.08998 * 113.41353 * 46.79777 * 11 8 7 39 39 H 1.09001 * 113.47148 * 24.87598 * 12 11 8 40 40 H 1.09003 * 113.52295 * 254.44033 * 12 11 8 41 41 H 1.08990 * 109.46997 * 299.99606 * 16 14 13 42 42 H 1.09001 * 109.47038 * 60.00166 * 16 14 13 43 43 H 0.96997 * 119.99857 * 180.02562 * 21 20 18 44 44 H 1.09003 * 113.46750 * 141.89678 * 26 13 12 45 45 H 1.09000 * 113.47312 * 272.34122 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7890 2.6380 1.1812 6 8 3.5705 3.4643 0.3209 7 7 4.7054 2.8869 2.1376 8 6 5.4380 4.1557 2.1375 9 1 4.7835 4.9531 1.7857 10 6 6.6502 4.0446 1.2107 11 6 5.9095 4.4724 3.5582 12 6 6.6929 5.7864 3.6830 13 7 5.9763 6.0335 4.9433 14 6 6.2231 6.7076 6.0840 15 8 7.2715 7.3013 6.2228 16 6 5.1969 6.7227 7.1875 17 16 5.8182 7.7038 8.5759 18 6 4.4597 7.5549 9.6880 19 1 3.5900 6.9808 9.4042 20 6 4.5068 8.1762 10.9283 21 7 5.5666 8.8763 11.2738 22 14 3.0662 8.0189 12.1069 23 1 2.0065 7.1850 11.4850 24 1 3.5245 7.3783 13.3659 25 1 2.5228 9.3679 12.4072 26 6 4.8745 5.2159 4.4138 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3587 2.1317 0.0895 31 1 2.6213 1.4024 -0.9314 32 1 3.7399 0.5065 1.0921 33 1 2.4772 1.2356 2.1130 34 1 4.8799 2.2262 2.8260 35 1 6.3143 3.8190 0.1986 36 1 7.1955 4.9885 1.2110 37 1 7.3047 3.2472 1.5625 38 1 6.3763 3.6241 4.0588 39 1 6.4573 6.5083 2.9011 40 1 7.7654 5.6427 3.8146 41 1 4.2712 7.1626 6.8168 42 1 5.0065 5.7024 7.5205 43 1 5.5997 9.3102 12.1407 44 1 4.4006 4.5861 5.1668 45 1 4.1545 5.7857 3.8264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756130830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:43 Heat of formation + Delta-G solvation = -53.487230 kcal Electronic energy + Delta-G solvation = -24220.049986 eV Core-core repulsion = 20557.225742 eV Total energy + Delta-G solvation = -3662.824244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.72618 -40.62397 -39.11909 -36.52278 -35.92877 -34.60827 -32.85255 -31.74841 -30.75698 -29.04022 -27.70752 -26.87195 -25.74510 -24.20130 -21.64885 -21.28850 -20.62034 -20.34791 -19.54412 -18.17979 -17.84692 -17.59420 -16.93199 -16.85131 -16.65139 -16.50244 -15.88262 -15.72788 -15.45437 -14.79654 -14.72413 -14.69143 -14.37489 -14.04690 -13.79081 -13.65101 -13.49244 -13.29662 -13.21667 -13.12106 -12.93244 -12.91886 -12.67448 -12.60950 -11.94956 -11.89415 -11.84521 -11.73590 -11.64185 -11.17755 -11.00625 -10.80998 -10.31689 -10.18320 -10.03326 -9.80547 -8.70922 -8.36832 -6.15983 1.18611 1.40735 1.41423 1.42436 1.51795 1.55794 1.73549 1.95424 2.24672 2.25490 2.97377 3.14387 3.23392 3.61047 3.70791 3.82744 4.02949 4.04480 4.12453 4.21632 4.24885 4.37740 4.40643 4.42508 4.48146 4.50732 4.51228 4.56570 4.66259 4.75843 4.82292 4.85950 4.98737 5.03593 5.12066 5.19041 5.26390 5.35413 5.39755 5.58969 5.79484 5.93849 6.17902 6.56830 6.64881 7.04233 7.06329 7.36050 8.72762 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.002111 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.186216 B =13257.574125 C =15070.642653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C -0.080 4.080 4 C -0.129 4.129 5 C 0.511 3.489 6 O -0.587 6.587 7 N -0.714 5.714 8 C 0.161 3.839 9 H 0.078 0.922 10 C -0.160 4.160 11 C -0.104 4.104 12 C 0.108 3.892 13 N -0.653 5.653 14 C 0.559 3.441 15 O -0.568 6.568 16 C -0.118 4.118 17 S -0.151 6.151 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.001 2.999 23 H -0.256 1.256 24 H -0.272 1.272 25 H -0.274 1.274 26 C 0.101 3.899 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.417 0.583 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.272 0.728 44 H 0.095 0.905 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.479 -21.918 -23.267 32.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.174 4.174 3 C -0.118 4.118 4 C -0.169 4.169 5 C 0.299 3.701 6 O -0.467 6.467 7 N -0.366 5.366 8 C 0.056 3.944 9 H 0.096 0.904 10 C -0.218 4.218 11 C -0.124 4.124 12 C -0.015 4.015 13 N -0.390 5.390 14 C 0.349 3.651 15 O -0.447 6.447 16 C -0.269 4.269 17 S 0.076 5.924 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.823 3.177 23 H -0.180 1.180 24 H -0.198 1.198 25 H -0.199 1.199 26 C -0.021 4.021 27 H 0.126 0.874 28 H 0.109 0.891 29 H 0.144 0.856 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.255 0.745 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.148 0.852 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.958 -20.227 -23.341 31.281 hybrid contribution -1.588 -0.354 0.928 1.873 sum -6.546 -20.581 -22.413 31.125 Atomic orbital electron populations 1.24039 0.96324 1.02308 1.01022 1.23030 0.96062 0.98372 0.99974 1.20454 0.97743 0.95449 0.98118 1.21646 0.99120 0.94630 1.01477 1.21238 0.79106 0.89401 0.80378 1.90710 1.67281 1.49738 1.38976 1.45989 1.40094 1.19744 1.30804 1.20695 0.93557 0.86982 0.93182 0.90426 1.22123 0.97337 1.03458 0.98893 1.23119 0.96718 0.97483 0.95066 1.23140 0.98863 0.95365 0.84083 1.49567 1.23659 1.51531 1.14199 1.19629 0.86797 0.76633 0.82060 1.90692 1.28409 1.44892 1.80708 1.23255 1.01025 1.05412 0.97197 1.85596 1.28211 1.66707 1.11851 1.23214 1.04216 1.38471 1.03427 0.89926 1.26163 1.00033 0.93745 0.99298 1.70192 1.30302 1.31953 1.22282 0.84874 0.77197 0.78432 0.77237 1.17982 1.19764 1.19945 1.23378 0.91155 0.91315 0.96235 0.87364 0.89112 0.85634 0.92609 0.91510 0.86123 0.86878 0.74522 0.93405 0.90875 0.90837 0.85156 0.88577 0.90267 0.87944 0.87406 0.91928 0.88690 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.93 14.32 67.79 0.97 -0.96 16 2 C -0.16 -1.40 9.52 25.65 0.24 -1.15 16 3 C -0.08 -0.91 4.95 29.85 0.15 -0.77 16 4 C -0.13 -0.92 5.68 29.85 0.17 -0.75 16 5 C 0.51 6.80 7.79 87.66 0.68 7.48 16 6 O -0.59 -13.50 15.64 -3.03 -0.05 -13.55 16 7 N -0.71 -6.04 5.08 -442.51 -2.25 -8.29 16 8 C 0.16 1.79 2.47 44.99 0.11 1.90 16 9 H 0.08 1.20 7.33 -2.39 -0.02 1.18 16 10 C -0.16 -1.74 9.29 71.98 0.67 -1.07 16 11 C -0.10 -1.19 3.66 -10.46 -0.04 -1.23 16 12 C 0.11 2.01 7.27 83.18 0.60 2.61 16 13 N -0.65 -17.32 3.69 -858.27 -3.17 -20.48 16 14 C 0.56 21.79 8.10 87.66 0.71 22.50 16 15 O -0.57 -27.65 16.64 -3.04 -0.05 -27.70 16 16 C -0.12 -4.84 5.98 71.24 0.43 -4.41 16 17 S -0.15 -8.51 20.57 -56.49 -1.16 -9.68 16 18 C -0.55 -31.32 9.50 67.95 0.65 -30.67 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.70 5.49 84.86 0.47 1.17 16 21 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16 22 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 C 0.10 1.63 7.99 83.18 0.66 2.30 16 27 H 0.11 0.78 8.06 -2.91 -0.02 0.76 16 28 H 0.09 0.96 7.84 -2.91 -0.02 0.94 16 29 H 0.13 0.69 8.06 -2.91 -0.02 0.67 16 30 H 0.06 0.84 7.75 -2.39 -0.02 0.82 16 31 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 32 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.42 1.00 8.60 -92.71 -0.80 0.21 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.76 7.48 -2.39 -0.02 0.74 16 37 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 1.59 8.10 -2.39 -0.02 1.58 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 42 H 0.11 3.96 8.14 -2.40 -0.02 3.95 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 45 H 0.10 1.43 7.93 -2.39 -0.02 1.41 16 Total: -1.00 -84.61 396.38 2.29 -82.33 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.17 Total: 10.69 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 6.47 Total: -3.05 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -5.13 Total: -84.58 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.10 Total: -41.25 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.68 kcal Total: -84.61 2.29 -82.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756130830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.838 kcal (2) G-P(sol) polarization free energy of solvation -84.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds