Wall clock time and date at job start Tue Mar 31 2020 14:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.41251 * 2 1 4 4 C 1.54904 * 110.37019 * 237.70280 * 2 1 3 5 5 C 1.55157 * 101.58552 * 204.15172 * 4 2 1 6 6 H 1.09000 * 110.72078 * 277.13876 * 5 4 2 7 7 N 1.46497 * 110.72245 * 154.04003 * 5 4 2 8 8 C 1.34778 * 120.00174 * 155.00473 * 7 5 4 9 9 O 1.21280 * 119.99599 * 359.97438 * 8 7 5 10 10 C 1.50693 * 119.99988 * 180.02562 * 8 7 5 11 11 S 1.81007 * 109.47126 * 179.97438 * 10 8 7 12 12 C 1.76195 * 99.99985 * 179.97438 * 11 10 8 13 13 H 1.07995 * 120.00175 * 0.02562 * 12 11 10 14 14 C 1.38800 * 119.99847 * 180.02562 * 12 11 10 15 15 N 1.31634 * 119.99946 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00217 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46763 * 60.00194 * 16 14 12 18 18 H 1.48496 * 109.47025 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47201 * 300.00413 * 16 14 12 20 20 C 1.54343 * 103.01877 * 35.30521 * 5 4 2 21 21 N 1.47027 * 107.26182 * 338.14305 * 20 5 4 22 22 C 1.34777 * 125.64300 * 178.85335 * 21 20 5 23 23 O 1.21278 * 119.99854 * 179.69318 * 22 21 20 24 24 C 1.50703 * 120.00161 * 359.68625 * 22 21 20 25 25 C 1.53000 * 109.46912 * 180.02562 * 24 22 21 26 26 C 1.53002 * 117.49654 * 243.74386 * 25 24 22 27 27 C 1.52999 * 117.49718 * 175.09043 * 25 24 22 28 28 H 1.09000 * 109.47166 * 299.16534 * 1 2 3 29 29 H 1.09001 * 109.46841 * 59.15983 * 1 2 3 30 30 H 1.08997 * 109.47248 * 179.16178 * 1 2 3 31 31 H 1.09001 * 111.00439 * 322.22295 * 4 2 1 32 32 H 1.08996 * 111.00805 * 86.03587 * 4 2 1 33 33 H 0.97004 * 119.99749 * 334.99982 * 7 5 4 34 34 H 1.09001 * 109.47537 * 299.99790 * 10 8 7 35 35 H 1.09006 * 109.47303 * 59.99797 * 10 8 7 36 36 H 0.97005 * 119.99609 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.98935 * 218.66835 * 20 5 4 38 38 H 1.09000 * 109.77621 * 97.49398 * 20 5 4 39 39 H 1.09002 * 109.47152 * 60.00245 * 24 22 21 40 40 H 1.09001 * 109.46980 * 300.00345 * 24 22 21 41 41 H 1.08997 * 115.55341 * 29.41927 * 25 24 22 42 42 H 1.09000 * 117.49888 * 0.02562 * 26 25 24 43 43 H 1.09005 * 117.49831 * 145.01661 * 26 25 24 44 44 H 1.08998 * 117.50075 * 214.97635 * 27 25 24 45 45 H 1.09007 * 117.49719 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0692 -0.7759 -1.2275 5 6 3.4778 -1.1997 -0.7341 6 1 4.1945 -0.3902 -0.8721 7 7 3.9268 -2.4105 -1.4258 8 6 5.2442 -2.6682 -1.5469 9 8 6.0579 -1.8975 -1.0835 10 6 5.7060 -3.9134 -2.2590 11 16 7.5151 -3.9742 -2.2562 12 6 7.7717 -5.4850 -3.1257 13 1 6.9253 -6.0574 -3.4754 14 6 9.0619 -5.9397 -3.3612 15 7 10.0936 -5.2423 -2.9345 16 14 9.3341 -7.5418 -4.2825 17 1 8.7362 -7.4410 -5.6381 18 1 10.7911 -7.8022 -4.4027 19 1 8.6913 -8.6554 -3.5395 20 6 3.2525 -1.4724 0.7683 21 7 2.0430 -0.7383 1.1683 22 6 1.4972 -0.7361 2.4006 23 8 0.4966 -0.0866 2.6195 24 6 2.1301 -1.5408 3.5065 25 6 1.3195 -1.3662 4.7924 26 6 2.0126 -0.6923 5.9783 27 6 1.7352 -2.1973 6.0078 28 1 -0.3633 0.5008 0.8974 29 1 -0.3633 0.5268 -0.8824 30 1 -0.3633 -1.0275 -0.0150 31 1 1.4512 -1.6481 -1.4407 32 1 2.1393 -0.1267 -2.1002 33 1 3.2759 -3.0268 -1.7967 34 1 5.3118 -4.7917 -1.7479 35 1 5.3449 -3.8990 -3.2874 36 1 10.9952 -5.5603 -3.0988 37 1 4.1081 -1.1188 1.3436 38 1 3.1089 -2.5404 0.9318 39 1 3.1505 -1.1942 3.6700 40 1 2.1446 -2.5942 3.2268 41 1 0.2557 -1.1728 4.6549 42 1 3.0459 -0.3730 5.8423 43 1 1.4046 -0.0557 6.6212 44 1 0.9449 -2.5504 6.6702 45 1 2.5859 -2.8688 5.8913 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756577347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:34 Heat of formation + Delta-G solvation = -50.437545 kcal Electronic energy + Delta-G solvation = -24905.512040 eV Core-core repulsion = 21242.820041 eV Total energy + Delta-G solvation = -3662.691999 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74361 -39.35720 -38.00728 -36.97285 -34.24893 -32.53600 -32.47199 -30.78604 -29.36571 -28.47670 -26.07494 -25.52787 -23.27641 -22.65328 -21.72406 -20.83099 -20.38789 -19.13599 -17.93847 -17.30086 -17.00978 -16.37352 -16.31287 -15.68657 -15.11907 -14.87900 -14.84368 -14.58726 -14.23130 -14.05060 -13.75661 -13.47339 -13.31094 -13.12865 -12.68805 -12.63466 -12.49323 -12.35937 -12.12007 -11.81619 -11.78529 -11.62057 -11.46121 -11.14273 -11.08431 -11.07235 -10.80447 -10.63979 -10.31103 -9.87606 -9.79083 -9.54826 -9.14562 -9.08455 -8.90220 -8.30605 -6.55817 -6.26086 -3.97340 2.40840 2.55529 2.92283 2.96824 3.20350 3.24238 3.26952 3.50526 3.60785 4.04360 4.16104 4.24656 4.37477 4.43782 4.61496 4.65384 4.81298 4.85074 4.92378 5.03857 5.07484 5.09231 5.15944 5.22567 5.25844 5.35660 5.36581 5.43008 5.45582 5.52976 5.55727 5.61089 5.76032 5.80399 5.83104 5.85410 5.93673 6.01758 6.06301 6.24263 6.45146 7.23979 7.53375 7.55500 7.94614 8.30443 8.45742 9.19278 10.81222 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.002310 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.212289 B =12120.348140 C =13248.083352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 H 0.079 0.921 4 C -0.137 4.137 5 C 0.138 3.862 6 H 0.108 0.892 7 N -0.730 5.730 8 C 0.534 3.466 9 O -0.513 6.513 10 C -0.154 4.154 11 S -0.059 6.059 12 C -0.537 4.537 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.086 3.914 21 N -0.616 5.616 22 C 0.536 3.464 23 O -0.537 6.537 24 C -0.109 4.109 25 C -0.141 4.141 26 C -0.178 4.178 27 C -0.180 4.180 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.401 0.599 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.269 0.731 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.907 7.692 9.713 23.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.033 3.967 3 H 0.097 0.903 4 C -0.175 4.175 5 C 0.031 3.969 6 H 0.126 0.874 7 N -0.384 5.384 8 C 0.320 3.680 9 O -0.387 6.387 10 C -0.305 4.305 11 S 0.168 5.832 12 C -0.685 4.685 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.039 4.039 21 N -0.352 5.352 22 C 0.325 3.675 23 O -0.414 6.414 24 C -0.149 4.149 25 C -0.159 4.159 26 C -0.215 4.215 27 C -0.217 4.217 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.236 0.764 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.135 0.865 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.884 9.338 10.694 23.626 hybrid contribution -0.879 -2.339 -1.361 2.845 sum -19.763 6.999 9.334 22.950 Atomic orbital electron populations 1.22162 0.93521 1.02690 1.03760 1.21873 0.95495 0.95629 0.83733 0.90277 1.23197 0.95182 1.01300 0.97849 1.21794 0.96147 0.89135 0.89779 0.87399 1.45977 1.07690 1.24946 1.59803 1.20400 0.81463 0.87203 0.78898 1.90714 1.52744 1.48266 1.46955 1.23538 1.07318 0.97105 1.02516 1.85401 0.91607 1.31328 1.74909 1.22816 0.95128 1.08385 1.42188 0.90950 1.24994 0.94950 0.97987 0.95618 1.70006 0.98700 1.37973 1.43578 0.86223 0.77370 0.82020 0.79887 1.19923 1.20793 1.19923 1.22570 0.87317 0.97259 0.96719 1.48557 1.28179 1.48981 1.09462 1.20227 0.83797 0.81619 0.81812 1.90623 1.25459 1.43807 1.81514 1.21239 1.00124 1.01045 0.92446 1.22046 1.00601 1.05104 0.88164 1.23050 1.01570 0.95304 1.01619 1.23021 1.03626 0.94140 1.00956 0.89356 0.91999 0.92687 0.89830 0.88931 0.76432 0.89115 0.89089 0.92081 0.90316 0.90671 0.88659 0.88476 0.86458 0.88763 0.88778 0.88670 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 8.71 37.16 0.32 -1.11 16 2 C 0.14 1.18 3.76 -66.42 -0.25 0.93 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.14 -1.01 6.13 -24.58 -0.15 -1.16 16 5 C 0.14 1.37 3.30 -66.09 -0.22 1.15 16 6 H 0.11 1.25 7.55 -51.93 -0.39 0.86 16 7 N -0.73 -8.18 5.12 -52.02 -0.27 -8.45 16 8 C 0.53 8.88 7.85 -10.99 -0.09 8.80 16 9 O -0.51 -10.59 15.51 5.56 0.09 -10.50 16 10 C -0.15 -2.87 6.16 36.00 0.22 -2.65 16 11 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 12 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 13 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 14 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 15 N -0.87 -25.63 13.22 55.49 0.73 -24.89 16 16 Si 0.92 20.93 29.55 -169.99 -5.02 15.90 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.09 0.82 6.25 -3.05 -0.02 0.80 16 21 N -0.62 -6.00 3.24 -163.04 -0.53 -6.53 16 22 C 0.54 5.83 7.63 -10.98 -0.08 5.74 16 23 O -0.54 -7.24 13.22 5.56 0.07 -7.16 16 24 C -0.11 -0.94 5.17 -27.88 -0.14 -1.09 16 25 C -0.14 -1.24 5.41 -90.62 -0.49 -1.73 16 26 C -0.18 -1.42 10.18 -26.70 -0.27 -1.69 16 27 C -0.18 -1.33 10.25 -26.70 -0.27 -1.61 16 28 H 0.09 0.98 5.89 -51.93 -0.31 0.67 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.40 3.40 8.56 -40.82 -0.35 3.05 16 34 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 35 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 39 H 0.10 0.76 7.88 -51.93 -0.41 0.35 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.12 1.20 7.31 -51.93 -0.38 0.82 16 42 H 0.09 0.71 8.03 -51.93 -0.42 0.30 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -34.02 384.41 -9.86 -43.88 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.28 Total: 1.91 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.24 Total: -6.21 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.06 Total: -39.87 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.16 Total: -17.67 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.02 -9.86 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756577347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.556 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds