Wall clock time and date at job start Tue Mar 31 2020 14:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.41251 * 2 1 4 4 C 1.54904 * 110.37019 * 237.70280 * 2 1 3 5 5 C 1.55157 * 101.58552 * 204.15172 * 4 2 1 6 6 H 1.09000 * 110.72078 * 277.13876 * 5 4 2 7 7 N 1.46497 * 110.72245 * 154.04003 * 5 4 2 8 8 C 1.34778 * 120.00174 * 155.00473 * 7 5 4 9 9 O 1.21280 * 119.99599 * 359.97438 * 8 7 5 10 10 C 1.50693 * 119.99988 * 180.02562 * 8 7 5 11 11 S 1.81007 * 109.47126 * 179.97438 * 10 8 7 12 12 C 1.76195 * 99.99985 * 179.97438 * 11 10 8 13 13 H 1.07995 * 120.00175 * 0.02562 * 12 11 10 14 14 C 1.38800 * 119.99847 * 180.02562 * 12 11 10 15 15 N 1.31634 * 119.99946 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00217 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46763 * 60.00194 * 16 14 12 18 18 H 1.48496 * 109.47025 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47201 * 300.00413 * 16 14 12 20 20 C 1.54343 * 103.01877 * 35.30521 * 5 4 2 21 21 N 1.47027 * 107.26182 * 338.14305 * 20 5 4 22 22 C 1.34777 * 125.64300 * 178.85335 * 21 20 5 23 23 O 1.21278 * 119.99854 * 179.69318 * 22 21 20 24 24 C 1.50703 * 120.00161 * 359.68625 * 22 21 20 25 25 C 1.53000 * 109.46912 * 180.02562 * 24 22 21 26 26 C 1.53002 * 117.49654 * 243.74386 * 25 24 22 27 27 C 1.52999 * 117.49718 * 175.09043 * 25 24 22 28 28 H 1.09000 * 109.47166 * 299.16534 * 1 2 3 29 29 H 1.09001 * 109.46841 * 59.15983 * 1 2 3 30 30 H 1.08997 * 109.47248 * 179.16178 * 1 2 3 31 31 H 1.09001 * 111.00439 * 322.22295 * 4 2 1 32 32 H 1.08996 * 111.00805 * 86.03587 * 4 2 1 33 33 H 0.97004 * 119.99749 * 334.99982 * 7 5 4 34 34 H 1.09001 * 109.47537 * 299.99790 * 10 8 7 35 35 H 1.09006 * 109.47303 * 59.99797 * 10 8 7 36 36 H 0.97005 * 119.99609 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.98935 * 218.66835 * 20 5 4 38 38 H 1.09000 * 109.77621 * 97.49398 * 20 5 4 39 39 H 1.09002 * 109.47152 * 60.00245 * 24 22 21 40 40 H 1.09001 * 109.46980 * 300.00345 * 24 22 21 41 41 H 1.08997 * 115.55341 * 29.41927 * 25 24 22 42 42 H 1.09000 * 117.49888 * 0.02562 * 26 25 24 43 43 H 1.09005 * 117.49831 * 145.01661 * 26 25 24 44 44 H 1.08998 * 117.50075 * 214.97635 * 27 25 24 45 45 H 1.09007 * 117.49719 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0692 -0.7759 -1.2275 5 6 3.4778 -1.1997 -0.7341 6 1 4.1945 -0.3902 -0.8721 7 7 3.9268 -2.4105 -1.4258 8 6 5.2442 -2.6682 -1.5469 9 8 6.0579 -1.8975 -1.0835 10 6 5.7060 -3.9134 -2.2590 11 16 7.5151 -3.9742 -2.2562 12 6 7.7717 -5.4850 -3.1257 13 1 6.9253 -6.0574 -3.4754 14 6 9.0619 -5.9397 -3.3612 15 7 10.0936 -5.2423 -2.9345 16 14 9.3341 -7.5418 -4.2825 17 1 8.7362 -7.4410 -5.6381 18 1 10.7911 -7.8022 -4.4027 19 1 8.6913 -8.6554 -3.5395 20 6 3.2525 -1.4724 0.7683 21 7 2.0430 -0.7383 1.1683 22 6 1.4972 -0.7361 2.4006 23 8 0.4966 -0.0866 2.6195 24 6 2.1301 -1.5408 3.5065 25 6 1.3195 -1.3662 4.7924 26 6 2.0126 -0.6923 5.9783 27 6 1.7352 -2.1973 6.0078 28 1 -0.3633 0.5008 0.8974 29 1 -0.3633 0.5268 -0.8824 30 1 -0.3633 -1.0275 -0.0150 31 1 1.4512 -1.6481 -1.4407 32 1 2.1393 -0.1267 -2.1002 33 1 3.2759 -3.0268 -1.7967 34 1 5.3118 -4.7917 -1.7479 35 1 5.3449 -3.8990 -3.2874 36 1 10.9952 -5.5603 -3.0988 37 1 4.1081 -1.1188 1.3436 38 1 3.1089 -2.5404 0.9318 39 1 3.1505 -1.1942 3.6700 40 1 2.1446 -2.5942 3.2268 41 1 0.2557 -1.1728 4.6549 42 1 3.0459 -0.3730 5.8423 43 1 1.4046 -0.0557 6.6212 44 1 0.9449 -2.5504 6.6702 45 1 2.5859 -2.8688 5.8913 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756577347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:33 Heat of formation + Delta-G solvation = -72.384678 kcal Electronic energy + Delta-G solvation = -24906.463739 eV Core-core repulsion = 21242.820041 eV Total energy + Delta-G solvation = -3663.643698 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59837 -40.51550 -38.86861 -37.75209 -35.34674 -34.55971 -33.28927 -31.92770 -30.12849 -29.63271 -27.63094 -26.80782 -24.12209 -23.25472 -22.56569 -21.79914 -21.28485 -19.96254 -19.80040 -18.18700 -17.91966 -17.54189 -17.28346 -16.85604 -16.64842 -16.31318 -15.84759 -15.70267 -15.27971 -14.93779 -14.76790 -14.61161 -14.39768 -14.20200 -13.93351 -13.57638 -13.37507 -13.18682 -13.14599 -13.04371 -12.85301 -12.69785 -12.59484 -12.39213 -12.33308 -12.19389 -11.89411 -11.70547 -11.28927 -11.10918 -10.96690 -10.94631 -10.63223 -10.24585 -10.17480 -9.72594 -8.63375 -8.32715 -6.09883 1.28038 1.45114 1.47621 1.55812 1.58244 1.60377 1.83761 2.27872 2.32680 2.87886 3.01613 3.26947 3.36884 3.46693 3.68982 3.74336 3.91851 3.98772 4.01890 4.12552 4.14505 4.19989 4.34467 4.35634 4.47073 4.55097 4.57172 4.59074 4.68287 4.71651 4.76719 4.78168 4.88929 4.93520 5.01687 5.13729 5.22316 5.24404 5.32359 5.43966 5.44648 5.50402 6.21692 6.43007 6.49681 7.09095 7.12081 7.24437 8.75960 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.002310 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.212289 B =12120.348140 C =13248.083352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 H 0.078 0.922 4 C -0.120 4.120 5 C 0.136 3.864 6 H 0.091 0.909 7 N -0.701 5.701 8 C 0.539 3.461 9 O -0.559 6.559 10 C -0.131 4.131 11 S -0.150 6.150 12 C -0.546 4.546 13 H 0.083 0.917 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.996 3.004 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.262 1.262 20 C 0.090 3.910 21 N -0.614 5.614 22 C 0.530 3.470 23 O -0.567 6.567 24 C -0.104 4.104 25 C -0.154 4.154 26 C -0.184 4.184 27 C -0.168 4.168 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.420 0.580 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.270 0.730 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.595 6.198 8.818 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.026 3.974 3 H 0.096 0.904 4 C -0.158 4.158 5 C 0.030 3.970 6 H 0.109 0.891 7 N -0.356 5.356 8 C 0.325 3.675 9 O -0.437 6.437 10 C -0.282 4.282 11 S 0.077 5.923 12 C -0.693 4.693 13 H 0.101 0.899 14 C -0.191 4.191 15 N -0.548 5.548 16 Si 0.817 3.183 17 H -0.187 1.187 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.034 4.034 21 N -0.349 5.349 22 C 0.321 3.679 23 O -0.447 6.447 24 C -0.144 4.144 25 C -0.173 4.173 26 C -0.220 4.220 27 C -0.205 4.205 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.258 0.742 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.631 7.835 9.786 24.141 hybrid contribution -0.487 -1.782 -1.040 2.120 sum -21.118 6.053 8.746 23.645 Atomic orbital electron populations 1.22056 0.93352 1.02476 1.03420 1.22016 0.95610 0.95840 0.83920 0.90413 1.23153 0.93078 1.01983 0.97581 1.21839 0.97209 0.87813 0.90116 0.89076 1.45634 1.05982 1.25426 1.58511 1.20048 0.82819 0.86114 0.78486 1.90712 1.54408 1.49475 1.49068 1.23380 1.01144 0.99199 1.04467 1.85571 0.99507 1.31926 1.75328 1.23175 0.95783 1.08487 1.41903 0.89853 1.26098 0.94633 1.01913 0.96498 1.70175 0.99205 1.40141 1.45250 0.85042 0.77332 0.77157 0.78719 1.18700 1.20613 1.18662 1.22486 0.86956 0.97713 0.96273 1.48594 1.27977 1.48746 1.09568 1.20627 0.83475 0.81417 0.82421 1.90618 1.26866 1.45184 1.82042 1.21253 1.00095 1.01414 0.91617 1.21981 0.99769 1.06687 0.88825 1.23129 1.01688 0.96031 1.01196 1.23093 1.03914 0.93796 0.99713 0.91922 0.90014 0.92836 0.88116 0.87237 0.74230 0.87004 0.87094 0.92058 0.91165 0.89710 0.87950 0.87142 0.88233 0.88417 0.88611 0.87859 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 8.71 71.98 0.63 -1.87 16 2 C 0.13 2.03 3.76 45.47 0.17 2.20 16 3 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 4 C -0.12 -1.40 6.13 31.98 0.20 -1.21 16 5 C 0.14 2.42 3.30 46.19 0.15 2.57 16 6 H 0.09 2.03 7.55 -2.39 -0.02 2.01 16 7 N -0.70 -13.81 5.12 -436.90 -2.24 -16.04 16 8 C 0.54 17.17 7.85 87.65 0.69 17.85 16 9 O -0.56 -23.14 15.51 -3.03 -0.05 -23.19 16 10 C -0.13 -4.65 6.16 71.23 0.44 -4.21 16 11 S -0.15 -7.94 20.57 -56.49 -1.16 -9.10 16 12 C -0.55 -30.01 9.50 67.95 0.65 -29.36 16 13 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 14 C 0.01 0.74 5.49 84.86 0.47 1.21 16 15 N -0.91 -54.79 13.22 21.65 0.29 -54.50 16 16 Si 1.00 42.39 29.55 68.60 2.03 44.42 16 17 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 18 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 C 0.09 1.58 6.25 86.73 0.54 2.13 16 21 N -0.61 -11.22 3.24 -788.12 -2.55 -13.78 16 22 C 0.53 11.28 7.63 87.66 0.67 11.95 16 23 O -0.57 -15.50 13.22 -3.02 -0.04 -15.54 16 24 C -0.10 -1.72 5.17 29.85 0.15 -1.56 16 25 C -0.15 -2.67 5.41 -10.79 -0.06 -2.73 16 26 C -0.18 -2.82 10.18 30.62 0.31 -2.51 16 27 C -0.17 -2.28 10.25 30.62 0.31 -1.97 16 28 H 0.06 1.38 5.89 -2.39 -0.01 1.36 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.91 7.93 -2.39 -0.02 0.89 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.42 5.41 8.56 -92.71 -0.79 4.62 16 34 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 35 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.35 8.03 -2.39 -0.02 1.33 16 39 H 0.10 1.53 7.88 -2.39 -0.02 1.51 16 40 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.10 2.09 7.31 -2.39 -0.02 2.07 16 42 H 0.10 1.41 8.03 -2.39 -0.02 1.39 16 43 H 0.10 1.40 8.14 -2.38 -0.02 1.39 16 44 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -76.35 384.41 1.79 -74.57 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.19 Total: 20.68 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.32 Total: -7.50 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -4.50 Total: -84.33 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.09 Total: -38.73 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.10 kcal Total: -76.35 1.79 -74.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756577347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.183 kcal (2) G-P(sol) polarization free energy of solvation -76.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds