Wall clock time and date at job start Tue Mar 31 2020 14:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.00007 * 2 1 4 4 C 1.54321 * 109.88332 * 238.89950 * 2 1 3 5 5 C 1.55448 * 102.96961 * 262.77636 * 4 2 1 6 6 H 1.09004 * 111.00873 * 82.52495 * 5 4 2 7 7 N 1.46502 * 111.11836 * 206.45988 * 5 4 2 8 8 C 1.34771 * 119.99867 * 198.55494 * 7 5 4 9 9 O 1.21283 * 120.00457 * 0.02562 * 8 7 5 10 10 C 1.50707 * 119.99769 * 180.02562 * 8 7 5 11 11 S 1.80997 * 109.47063 * 180.02562 * 10 8 7 12 12 C 1.76202 * 99.99793 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00339 * 359.97438 * 12 11 10 14 14 C 1.38806 * 119.99867 * 179.97438 * 12 11 10 15 15 N 1.31625 * 119.99962 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99896 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46936 * 89.99965 * 16 14 12 18 18 H 1.48502 * 109.46781 * 210.00138 * 16 14 12 19 19 H 1.48496 * 109.46961 * 329.99776 * 16 14 12 20 20 C 1.54905 * 101.45165 * 324.51771 * 5 4 2 21 21 N 1.47026 * 109.88081 * 121.09563 * 2 1 3 22 22 C 1.34780 * 125.64285 * 300.49145 * 21 2 1 23 23 O 1.21278 * 120.00092 * 359.95937 * 22 21 2 24 24 C 1.50698 * 119.99648 * 179.97438 * 22 21 2 25 25 C 1.53001 * 109.47140 * 180.02562 * 24 22 21 26 26 C 1.53002 * 117.49404 * 243.61858 * 25 24 22 27 27 C 1.52995 * 117.49926 * 174.99823 * 25 24 22 28 28 H 1.09003 * 109.47259 * 300.36432 * 1 2 3 29 29 H 1.09002 * 109.46915 * 60.36204 * 1 2 3 30 30 H 1.08994 * 109.47308 * 180.36223 * 1 2 3 31 31 H 1.08998 * 110.71927 * 21.14082 * 4 2 1 32 32 H 1.08997 * 110.72400 * 144.41459 * 4 2 1 33 33 H 0.97005 * 119.99716 * 18.56000 * 7 5 4 34 34 H 1.09000 * 109.46839 * 300.00066 * 10 8 7 35 35 H 1.08996 * 109.46904 * 60.00309 * 10 8 7 36 36 H 0.97002 * 120.00217 * 179.97438 * 15 14 12 37 37 H 1.09002 * 110.36692 * 278.10842 * 20 5 4 38 38 H 1.08995 * 110.36664 * 155.89643 * 20 5 4 39 39 H 1.09002 * 109.46907 * 300.00409 * 24 22 21 40 40 H 1.08999 * 109.47452 * 59.99754 * 24 22 21 41 41 H 1.08993 * 115.54970 * 29.32449 * 25 24 22 42 42 H 1.08991 * 117.50290 * 0.02562 * 26 25 24 43 43 H 1.09010 * 117.49327 * 145.01740 * 26 25 24 44 44 H 1.08997 * 117.50193 * 214.97155 * 27 25 24 45 45 H 1.09002 * 117.50227 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 -1.2426 5 6 2.3526 -2.1724 -0.6918 6 1 1.4458 -2.7765 -0.6591 7 7 3.3948 -2.8358 -1.4792 8 6 3.5376 -4.1744 -1.4161 9 8 2.8031 -4.8300 -0.7078 10 6 4.6102 -4.8568 -2.2256 11 16 4.5467 -6.6411 -1.9288 12 6 5.8668 -7.1713 -2.9685 13 1 6.4280 -6.4472 -3.5405 14 6 6.1856 -8.5197 -3.0524 15 7 7.1714 -8.9158 -3.8294 16 14 5.2145 -9.7722 -2.0636 17 1 4.0605 -10.2498 -2.8668 18 1 6.0911 -10.9219 -1.7241 19 1 4.7203 -9.1406 -0.8138 20 6 2.8567 -1.8498 0.7369 21 7 2.0299 -0.7141 1.1840 22 6 1.7744 -0.3849 2.4657 23 8 1.0777 0.5752 2.7179 24 6 2.3546 -1.2099 3.5855 25 6 1.9140 -0.6268 4.9297 26 6 3.0037 -0.0769 5.8523 27 6 2.3045 -1.3940 6.1945 28 1 -0.3634 0.5195 0.8867 29 1 -0.3633 0.5082 -0.8932 30 1 -0.3633 -1.0276 0.0065 31 1 1.2918 -0.7891 -2.0200 32 1 2.9656 -0.2834 -1.6182 33 1 3.9821 -2.3115 -2.0459 34 1 4.4468 -4.6590 -3.2850 35 1 5.5870 -4.4736 -1.9308 36 1 7.3944 -9.8580 -3.8878 37 1 3.9091 -1.5668 0.7130 38 1 2.7101 -2.7073 1.3936 39 1 1.9999 -2.2371 3.5015 40 1 3.4427 -1.1950 3.5217 41 1 0.9510 -0.1165 4.9277 42 1 4.0342 -0.1300 5.5015 43 1 2.7575 0.7957 6.4575 44 1 1.5985 -1.3881 7.0249 45 1 2.8749 -2.3144 6.0690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756577348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:36 Heat of formation + Delta-G solvation = -74.646050 kcal Electronic energy + Delta-G solvation = -25019.227578 eV Core-core repulsion = 21355.485819 eV Total energy + Delta-G solvation = -3663.741759 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60369 -40.52990 -38.93105 -37.77179 -35.38440 -34.64691 -33.27398 -31.88535 -30.16071 -29.61919 -27.82306 -26.91339 -24.28356 -23.25780 -22.58494 -21.72078 -21.24830 -20.09153 -19.84860 -18.38273 -18.03664 -17.31911 -17.11186 -17.01835 -16.56441 -16.33474 -16.06927 -15.56389 -15.17757 -15.02077 -14.87844 -14.63799 -14.60177 -14.37203 -14.10361 -13.65633 -13.61522 -13.32011 -13.17411 -13.07163 -12.98442 -12.65896 -12.53365 -12.37837 -12.30998 -12.18201 -11.85113 -11.72232 -11.32883 -11.15157 -11.03188 -10.99318 -10.78704 -10.49802 -10.23317 -9.74164 -8.96053 -8.49467 -6.19436 1.01231 1.33265 1.47284 1.52462 1.56443 1.58312 1.81487 2.25385 2.29571 2.73900 2.87468 2.89138 3.30380 3.45259 3.66732 3.73377 3.89491 3.94745 4.00882 4.09885 4.13713 4.17629 4.29612 4.34603 4.44192 4.52488 4.53663 4.58087 4.64480 4.70028 4.77492 4.78019 4.88500 4.94599 5.01103 5.05191 5.23990 5.25618 5.30805 5.37062 5.45866 5.72886 6.14305 6.40032 6.47451 6.96154 7.08849 7.20259 8.62771 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.002528 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.983160 B =11073.601743 C =12385.683687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.082 0.918 4 C -0.119 4.119 5 C 0.137 3.863 6 H 0.086 0.914 7 N -0.699 5.699 8 C 0.540 3.460 9 O -0.557 6.557 10 C -0.112 4.112 11 S -0.176 6.176 12 C -0.527 4.527 13 H 0.063 0.937 14 C 0.044 3.956 15 N -0.918 5.918 16 Si 0.913 3.087 17 H -0.264 1.264 18 H -0.262 1.262 19 H -0.234 1.234 20 C 0.088 3.912 21 N -0.614 5.614 22 C 0.530 3.470 23 O -0.572 6.572 24 C -0.104 4.104 25 C -0.157 4.157 26 C -0.177 4.177 27 C -0.171 4.171 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.422 0.578 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.276 0.724 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 21.029 11.161 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 H 0.100 0.900 4 C -0.157 4.157 5 C 0.031 3.969 6 H 0.104 0.896 7 N -0.353 5.353 8 C 0.326 3.674 9 O -0.434 6.434 10 C -0.263 4.263 11 S 0.050 5.950 12 C -0.675 4.675 13 H 0.082 0.918 14 C -0.161 4.161 15 N -0.556 5.556 16 Si 0.736 3.264 17 H -0.189 1.189 18 H -0.187 1.187 19 H -0.158 1.158 20 C -0.036 4.036 21 N -0.348 5.348 22 C 0.320 3.680 23 O -0.452 6.452 24 C -0.143 4.143 25 C -0.176 4.176 26 C -0.214 4.214 27 C -0.208 4.208 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.260 0.740 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.813 20.349 12.458 26.196 hybrid contribution 1.073 0.085 -1.014 1.479 sum -9.740 20.434 11.444 25.365 Atomic orbital electron populations 1.22128 0.94767 1.02046 1.02933 1.21656 0.94810 0.96686 0.83962 0.90011 1.23059 1.04332 0.91732 0.96581 1.22001 0.90979 0.94162 0.89781 0.89582 1.45541 1.36467 1.05610 1.47712 1.19948 0.83646 0.82789 0.81048 1.90713 1.45855 1.65414 1.41434 1.23277 1.01854 0.96937 1.04223 1.84728 1.45690 1.03203 1.61356 1.22477 1.18512 0.96493 1.29969 0.91832 1.25569 0.95352 0.99673 0.95518 1.70015 1.29477 1.17599 1.38520 0.85876 0.79403 0.79781 0.81375 1.18874 1.18654 1.15811 1.22787 0.95839 0.88669 0.96330 1.48570 1.50712 1.30340 1.05180 1.20653 0.79821 0.84636 0.82870 1.90653 1.40322 1.30576 1.83633 1.21244 1.02682 0.99687 0.90700 1.21974 1.00390 1.05073 0.90148 1.23119 0.97446 0.97868 1.03003 1.23084 1.03675 0.96135 0.97890 0.93465 0.89471 0.92981 0.87420 0.87203 0.73984 0.86716 0.86500 0.91454 0.89162 0.90596 0.87743 0.87269 0.88545 0.87993 0.88582 0.88030 0.87743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.06 71.98 0.65 -1.94 16 2 C 0.13 1.93 3.50 45.34 0.16 2.09 16 3 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.12 -1.16 6.13 31.88 0.20 -0.96 16 5 C 0.14 2.19 3.33 46.48 0.15 2.34 16 6 H 0.09 1.80 7.73 -2.38 -0.02 1.78 16 7 N -0.70 -12.11 5.23 -435.48 -2.28 -14.39 16 8 C 0.54 15.53 7.85 87.66 0.69 16.22 16 9 O -0.56 -20.81 15.61 -3.04 -0.05 -20.86 16 10 C -0.11 -3.70 6.16 71.24 0.44 -3.27 16 11 S -0.18 -8.36 18.55 -56.49 -1.05 -9.41 16 12 C -0.53 -29.45 10.04 67.96 0.68 -28.77 16 13 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 14 C 0.04 2.52 5.50 84.86 0.47 2.99 16 15 N -0.92 -54.74 13.97 21.65 0.30 -54.44 16 16 Si 0.91 43.76 27.74 68.60 1.90 45.66 16 17 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.23 -11.10 6.74 99.48 0.67 -10.43 16 20 C 0.09 1.42 6.38 86.85 0.55 1.97 16 21 N -0.61 -10.90 3.08 -788.08 -2.43 -13.33 16 22 C 0.53 11.44 7.63 87.66 0.67 12.11 16 23 O -0.57 -16.17 14.46 -3.02 -0.04 -16.22 16 24 C -0.10 -1.74 4.99 29.85 0.15 -1.60 16 25 C -0.16 -2.79 5.41 -10.79 -0.06 -2.85 16 26 C -0.18 -2.61 10.18 30.59 0.31 -2.30 16 27 C -0.17 -2.39 10.25 30.59 0.31 -2.08 16 28 H 0.05 1.02 6.74 -2.39 -0.02 1.00 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 0.82 7.83 -2.39 -0.02 0.81 16 32 H 0.11 0.60 8.01 -2.39 -0.02 0.58 16 33 H 0.42 4.42 8.53 -92.70 -0.79 3.63 16 34 H 0.11 3.45 8.14 -2.40 -0.02 3.44 16 35 H 0.12 3.48 8.14 -2.40 -0.02 3.46 16 36 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.42 7.47 -2.39 -0.02 1.40 16 39 H 0.10 1.63 7.85 -2.39 -0.02 1.61 16 40 H 0.11 1.48 7.88 -2.39 -0.02 1.46 16 41 H 0.10 2.12 7.30 -2.39 -0.02 2.11 16 42 H 0.10 1.32 8.03 -2.39 -0.02 1.30 16 43 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -75.32 382.96 1.89 -73.43 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.16 Total: 15.60 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 5.37 Total: -6.03 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -4.40 Total: -82.17 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.09 Total: -37.07 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.90 Total: 45.66 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.05 Total: -9.41 kcal Total: -75.32 1.89 -73.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756577348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.216 kcal (2) G-P(sol) polarization free energy of solvation -75.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds