Wall clock time and date at job start Tue Mar 31 2020 14:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09008 * 109.99687 * 2 1 4 4 C 1.54320 * 109.88686 * 121.09809 * 2 1 3 5 5 C 1.55154 * 102.94290 * 141.61084 * 4 2 1 6 6 H 1.09002 * 111.00352 * 82.57068 * 5 4 2 7 7 N 1.46504 * 110.99931 * 206.38580 * 5 4 2 8 8 C 1.34782 * 119.99380 * 205.00195 * 7 5 4 9 9 O 1.21280 * 120.00486 * 359.97438 * 8 7 5 10 10 C 1.50701 * 119.99471 * 180.02562 * 8 7 5 11 11 C 1.53782 * 113.61303 * 277.48871 * 10 8 7 12 12 C 1.53777 * 87.08174 * 220.02238 * 11 10 8 13 13 C 1.53778 * 87.08155 * 25.43507 * 12 11 10 14 14 C 1.55123 * 101.48369 * 324.33199 * 5 4 2 15 15 N 1.47018 * 109.88153 * 238.90960 * 2 1 3 16 16 C 1.34777 * 125.65319 * 61.59679 * 15 2 1 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 2 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 2 19 19 S 1.81002 * 109.47178 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00092 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00019 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99810 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99575 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00242 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47244 * 90.00194 * 24 22 20 26 26 H 1.48498 * 109.47205 * 209.99923 * 24 22 20 27 27 H 1.48496 * 109.47344 * 330.00405 * 24 22 20 28 28 H 1.09003 * 109.46666 * 179.64624 * 1 2 3 29 29 H 1.08995 * 109.46631 * 299.63933 * 1 2 3 30 30 H 1.09002 * 109.47522 * 59.64299 * 1 2 3 31 31 H 1.09001 * 110.71772 * 259.97468 * 4 2 1 32 32 H 1.09000 * 110.71921 * 23.06679 * 4 2 1 33 33 H 0.96992 * 120.00620 * 25.00060 * 7 5 4 34 34 H 1.08993 * 112.85578 * 48.80088 * 10 8 7 35 35 H 1.08999 * 113.61474 * 334.57341 * 11 10 8 36 36 H 1.09008 * 113.61173 * 105.47186 * 11 10 8 37 37 H 1.09001 * 113.61450 * 270.87942 * 12 11 10 38 38 H 1.09007 * 113.61279 * 139.98320 * 12 11 10 39 39 H 1.09006 * 113.61255 * 220.01629 * 13 12 11 40 40 H 1.09000 * 113.61558 * 89.11861 * 13 12 11 41 41 H 1.09003 * 110.49564 * 278.45141 * 14 5 4 42 42 H 1.08999 * 110.34198 * 156.06541 * 14 5 4 43 43 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 44 44 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 45 45 H 0.97007 * 119.99682 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0550 -0.7495 1.2426 5 6 3.2877 -1.5142 0.6922 6 1 4.1655 -0.8687 0.6602 7 7 3.5538 -2.7190 1.4820 8 6 4.7974 -3.2372 1.5224 9 8 5.6959 -2.7064 0.9045 10 6 5.0710 -4.4769 2.3343 11 6 5.3009 -4.1962 3.8287 12 6 6.4131 -5.2569 3.7763 13 6 6.5363 -4.9401 2.2766 14 6 2.8099 -1.8824 -0.7369 15 7 2.0300 -0.7139 -1.1840 16 6 1.8073 -0.3620 -2.4658 17 8 1.1434 0.6211 -2.7180 18 6 2.3832 -1.1900 -3.5855 19 16 1.9122 -0.4651 -5.1758 20 6 2.6949 -1.5999 -6.2731 21 1 3.2549 -2.4345 -5.8777 22 6 2.5910 -1.4218 -7.6457 23 7 3.1754 -2.2699 -8.4654 24 14 1.6208 0.0205 -8.3296 25 1 2.5222 1.1888 -8.4966 26 1 1.0432 -0.3512 -9.6462 27 1 0.5257 0.3706 -7.3897 28 1 -0.3633 -1.0277 -0.0063 29 1 -0.3632 0.5082 0.8932 30 1 -0.3634 0.5194 -0.8868 31 1 2.3530 -0.0460 2.0200 32 1 1.3041 -1.4437 1.6200 33 1 2.8352 -3.1438 1.9759 34 1 4.3532 -5.2747 2.1440 35 1 5.6665 -3.1898 4.0328 36 1 4.4584 -4.4777 4.4605 37 1 6.0620 -6.2682 3.9817 38 1 7.2986 -4.9899 4.3532 39 1 6.6913 -5.8222 1.6553 40 1 7.2397 -4.1371 2.0563 41 1 2.1802 -2.7717 -0.7115 42 1 3.6655 -2.0411 -1.3933 43 1 1.9970 -2.2072 -3.5209 44 1 3.4699 -1.2079 -3.5023 45 1 3.1030 -2.1452 -9.4247 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756579229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:51 Heat of formation + Delta-G solvation = -55.195266 kcal Electronic energy + Delta-G solvation = -25264.705237 eV Core-core repulsion = 21601.806927 eV Total energy + Delta-G solvation = -3662.898309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83092 -39.94915 -38.07671 -37.14643 -34.54501 -32.42399 -32.27044 -30.37183 -28.84530 -27.03273 -26.06292 -25.96915 -25.59132 -22.92121 -21.59377 -21.11353 -19.77000 -19.05284 -17.89890 -17.64764 -16.93687 -16.74263 -16.00650 -15.56962 -15.15040 -14.98394 -14.85422 -14.56878 -14.37701 -13.75008 -13.63513 -13.29055 -13.25823 -13.08382 -12.87836 -12.79332 -12.63694 -12.44325 -12.15528 -12.02622 -11.76556 -11.60586 -11.27122 -11.20199 -11.04590 -10.99116 -10.97204 -10.82513 -10.59013 -9.99910 -9.84244 -9.62503 -9.34601 -8.98567 -8.61855 -8.48409 -6.90300 -6.26927 -3.98677 2.28614 2.55564 2.81836 2.95523 3.24248 3.34869 3.51682 3.61757 4.05416 4.07901 4.15525 4.26833 4.33261 4.35000 4.38744 4.59746 4.71211 4.73951 4.91250 4.97447 5.11700 5.12055 5.15112 5.22681 5.29551 5.34970 5.35591 5.42562 5.44256 5.54187 5.56872 5.57928 5.64362 5.69940 5.80494 5.94412 5.98577 6.04247 6.10683 6.18869 6.42736 7.12989 7.54994 7.90731 7.96257 8.43356 8.44288 9.19113 10.82385 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.002760 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.268424 B =10141.289488 C =11802.207547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.079 0.921 4 C -0.133 4.133 5 C 0.132 3.868 6 H 0.109 0.891 7 N -0.720 5.720 8 C 0.523 3.477 9 O -0.531 6.531 10 C -0.139 4.139 11 C -0.123 4.123 12 C -0.143 4.143 13 C -0.119 4.119 14 C 0.091 3.909 15 N -0.620 5.620 16 C 0.550 3.450 17 O -0.514 6.514 18 C -0.119 4.119 19 S -0.142 6.142 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.402 0.598 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.392 -4.909 29.602 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.097 0.903 4 C -0.171 4.171 5 C 0.026 3.974 6 H 0.127 0.873 7 N -0.372 5.372 8 C 0.309 3.691 9 O -0.406 6.406 10 C -0.161 4.161 11 C -0.161 4.161 12 C -0.180 4.180 13 C -0.157 4.157 14 C -0.034 4.034 15 N -0.357 5.357 16 C 0.339 3.661 17 O -0.388 6.388 18 C -0.269 4.269 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.237 0.763 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.093 -3.087 28.485 28.652 hybrid contribution 0.060 -1.014 -0.088 1.019 sum 0.153 -4.101 28.397 28.692 Atomic orbital electron populations 1.22145 0.94440 1.02336 1.03147 1.21458 0.94959 0.96517 0.83630 0.90317 1.23025 0.96821 0.99861 0.97440 1.22131 0.98769 0.86658 0.89881 0.87340 1.45898 1.11091 1.29222 1.50974 1.20631 0.82056 0.85525 0.80852 1.90741 1.44370 1.61520 1.43987 1.22828 1.00600 0.96185 0.96451 1.22826 0.99571 1.00332 0.93363 1.22838 0.99087 0.99071 0.97036 1.22823 0.94465 1.02016 0.96369 1.22693 0.96013 0.89100 0.95638 1.48456 1.53892 1.28496 1.04898 1.19959 0.79742 0.84985 0.81424 1.90689 1.38678 1.26922 1.82523 1.23276 1.04157 1.02391 0.97099 1.84741 1.70827 1.40386 0.95569 1.22309 1.37902 1.13727 0.92825 0.89400 1.24714 0.94569 0.96243 0.95805 1.69946 1.42296 1.35954 1.03522 0.86729 0.82241 0.82784 0.80064 1.19189 1.19947 1.15932 0.92545 0.91881 0.90662 0.89387 0.89808 0.76296 0.86787 0.89665 0.90653 0.89827 0.90923 0.90820 0.88597 0.91062 0.89692 0.88641 0.88549 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.10 37.16 0.34 -1.41 16 2 C 0.14 1.51 3.46 -66.96 -0.23 1.28 16 3 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 4 C -0.13 -0.94 6.12 -24.90 -0.15 -1.09 16 5 C 0.13 1.17 3.44 -65.67 -0.23 0.95 16 6 H 0.11 1.18 7.54 -51.93 -0.39 0.79 16 7 N -0.72 -5.06 5.20 -51.62 -0.27 -5.32 16 8 C 0.52 4.86 7.35 -10.98 -0.08 4.78 16 9 O -0.53 -7.39 15.54 5.56 0.09 -7.31 16 10 C -0.14 -0.88 4.15 -90.96 -0.38 -1.26 16 11 C -0.12 -0.60 7.63 -25.92 -0.20 -0.80 16 12 C -0.14 -0.71 8.08 -25.92 -0.21 -0.92 16 13 C -0.12 -0.85 7.41 -25.92 -0.19 -1.04 16 14 C 0.09 1.03 6.39 -2.41 -0.02 1.02 16 15 N -0.62 -8.65 3.06 -162.88 -0.50 -9.15 16 16 C 0.55 10.30 7.66 -10.98 -0.08 10.22 16 17 O -0.51 -11.24 14.90 5.56 0.08 -11.16 16 18 C -0.12 -2.43 5.16 36.01 0.19 -2.25 16 19 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 20 C -0.52 -15.30 10.04 30.94 0.31 -14.99 16 21 H 0.09 2.70 8.03 -52.48 -0.42 2.28 16 22 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 23 N -0.88 -26.99 13.97 55.49 0.78 -26.21 16 24 Si 0.86 22.11 27.74 -169.99 -4.71 17.40 16 25 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.07 6.88 -51.93 -0.36 0.71 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.45 7.72 -51.93 -0.40 0.05 16 33 H 0.40 1.61 8.57 -40.82 -0.35 1.26 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 36 H 0.07 0.25 8.14 -51.92 -0.42 -0.18 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.87 7.43 -51.93 -0.39 0.48 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.11 7.48 -51.93 -0.39 0.72 16 43 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 44 H 0.10 1.90 7.85 -51.91 -0.41 1.50 16 45 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -36.19 378.87 -9.18 -45.37 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.33 Total: -0.89 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.03 Total: -2.77 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.01 Total: -40.68 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.17 Total: -18.46 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.40 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.19 -9.18 -45.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756579229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.828 kcal (2) G-P(sol) polarization free energy of solvation -36.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds