Wall clock time and date at job start Tue Mar 31 2020 14:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.32760 * 2 1 4 4 C 1.54908 * 110.36468 * 237.76251 * 2 1 3 5 5 C 1.55153 * 101.58185 * 204.03834 * 4 2 1 6 6 H 1.08994 * 110.72843 * 276.96654 * 5 4 2 7 7 N 1.46505 * 110.71857 * 153.86749 * 5 4 2 8 8 C 1.34775 * 119.99988 * 155.00713 * 7 5 4 9 9 O 1.21286 * 119.99882 * 359.97438 * 8 7 5 10 10 C 1.50699 * 120.00179 * 180.02562 * 8 7 5 11 11 C 1.53777 * 113.61269 * 277.49316 * 10 8 7 12 12 C 1.53780 * 87.08245 * 220.01373 * 11 10 8 13 13 C 1.53782 * 113.61564 * 179.97438 * 10 8 7 14 14 C 1.54327 * 102.93934 * 35.50719 * 5 4 2 15 15 N 1.47011 * 107.27207 * 337.80325 * 14 5 4 16 16 C 1.34777 * 125.64898 * 178.97857 * 15 14 5 17 17 O 1.21285 * 119.99958 * 179.97438 * 16 15 14 18 18 C 1.50695 * 120.00142 * 359.95973 * 16 15 14 19 19 S 1.80998 * 109.47232 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00132 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99611 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00199 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00033 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99954 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47287 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46990 * 119.99969 * 24 22 20 27 27 H 1.48500 * 109.47306 * 240.00188 * 24 22 20 28 28 H 1.09003 * 109.47009 * 180.70485 * 1 2 3 29 29 H 1.09005 * 109.46863 * 300.69936 * 1 2 3 30 30 H 1.08992 * 109.47214 * 60.69577 * 1 2 3 31 31 H 1.08998 * 111.00755 * 322.11966 * 4 2 1 32 32 H 1.09001 * 111.00240 * 85.92951 * 4 2 1 33 33 H 0.97002 * 120.00132 * 335.00062 * 7 5 4 34 34 H 1.09003 * 112.84888 * 48.80017 * 10 8 7 35 35 H 1.08995 * 113.61801 * 334.56967 * 11 10 8 36 36 H 1.09006 * 113.61696 * 105.46814 * 11 10 8 37 37 H 1.08989 * 113.61970 * 270.88631 * 12 11 10 38 38 H 1.09000 * 113.68790 * 139.98867 * 12 11 10 39 39 H 1.09002 * 113.61230 * 254.52809 * 13 10 8 40 40 H 1.08995 * 113.61528 * 25.35086 * 13 10 8 41 41 H 1.09003 * 109.88254 * 97.22607 * 14 5 4 42 42 H 1.09002 * 109.88094 * 218.23022 * 14 5 4 43 43 H 1.09001 * 109.47012 * 299.99683 * 18 16 15 44 44 H 1.08995 * 109.47457 * 59.99726 * 18 16 15 45 45 H 0.97001 * 119.99826 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7747 -1.2284 5 6 3.4788 -1.1965 -0.7365 6 1 4.1949 -0.3870 -0.8777 7 7 3.9272 -2.4087 -1.4263 8 6 5.2445 -2.6660 -1.5492 9 8 6.0587 -1.8937 -1.0891 10 6 5.7057 -3.9126 -2.2592 11 6 5.6959 -5.1673 -1.3700 12 6 7.0224 -5.5583 -2.0426 13 6 7.2355 -4.0595 -2.3150 14 6 3.2523 -1.4745 0.7645 15 7 2.0454 -0.7381 1.1675 16 6 1.5007 -0.7373 2.4003 17 8 0.4992 -0.0896 2.6204 18 6 2.1359 -1.5414 3.5052 19 16 1.1782 -1.3370 5.0274 20 6 2.1162 -2.3545 6.1181 21 1 2.9943 -2.8684 5.7557 22 6 1.7273 -2.4946 7.4431 23 7 0.6575 -1.8678 7.8848 24 14 2.7214 -3.5738 8.5991 25 1 3.8684 -4.1631 7.8626 26 1 3.2280 -2.7538 9.7288 27 1 1.8586 -4.6620 9.1251 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5247 0.8837 30 1 -0.3633 0.5029 -0.8961 31 1 1.4521 -1.6476 -1.4414 32 1 2.1373 -0.1249 -2.1009 33 1 3.2760 -3.0262 -1.7945 34 1 5.2182 -4.0554 -3.2236 35 1 5.7931 -4.9495 -0.3065 36 1 4.8766 -5.8518 -1.5897 37 1 6.8947 -6.1524 -2.9474 38 1 7.7527 -5.9855 -1.3553 39 1 7.6587 -3.8499 -3.2974 40 1 7.7539 -3.5376 -1.5107 41 1 3.1061 -2.5426 0.9257 42 1 4.1107 -1.1271 1.3395 43 1 2.1518 -2.5947 3.2251 44 1 3.1559 -1.1933 3.6678 45 1 0.3855 -1.9660 8.8107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756579231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:57 Heat of formation + Delta-G solvation = -53.403035 kcal Electronic energy + Delta-G solvation = -25367.493101 eV Core-core repulsion = 21704.672509 eV Total energy + Delta-G solvation = -3662.820593 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.81519 -39.89144 -38.03001 -37.04661 -34.47430 -32.42538 -32.23629 -30.33322 -28.68602 -27.00253 -26.00270 -25.85572 -25.46625 -22.88176 -21.52809 -21.08727 -19.74269 -18.93746 -17.88208 -17.59430 -16.90122 -16.61767 -15.87557 -15.76732 -15.13810 -14.82607 -14.79303 -14.64745 -14.20704 -13.74004 -13.65561 -13.25303 -13.12586 -12.86704 -12.82821 -12.62463 -12.53997 -12.24943 -12.11491 -11.94968 -11.67133 -11.58234 -11.24294 -11.06501 -11.05205 -10.98020 -10.93507 -10.79833 -10.75051 -9.97365 -9.79970 -9.55171 -9.11879 -9.06900 -8.51749 -8.22917 -6.49647 -6.21452 -3.91764 2.29721 2.65508 2.98830 3.07337 3.21969 3.27283 3.32084 3.62613 4.07226 4.13923 4.16933 4.21032 4.32636 4.36899 4.41624 4.69749 4.73595 4.92863 5.00891 5.09009 5.13343 5.13930 5.29167 5.33190 5.39842 5.40809 5.50759 5.51011 5.58003 5.60931 5.63564 5.67326 5.69302 5.70848 5.90544 6.01705 6.08670 6.14917 6.16159 6.29766 6.62296 7.14637 7.60442 7.66257 7.90993 8.36075 8.57035 9.24143 10.86057 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010468 B = 0.003156 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.297292 B = 8870.364458 C =11176.291815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 H 0.076 0.924 4 C -0.135 4.135 5 C 0.133 3.867 6 H 0.107 0.893 7 N -0.720 5.720 8 C 0.523 3.477 9 O -0.534 6.534 10 C -0.140 4.140 11 C -0.124 4.124 12 C -0.143 4.143 13 C -0.118 4.118 14 C 0.093 3.907 15 N -0.622 5.622 16 C 0.552 3.448 17 O -0.510 6.510 18 C -0.148 4.148 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.403 0.597 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.302 -4.805 -25.802 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.094 0.906 4 C -0.174 4.174 5 C 0.028 3.972 6 H 0.125 0.875 7 N -0.372 5.372 8 C 0.310 3.690 9 O -0.410 6.410 10 C -0.161 4.161 11 C -0.162 4.162 12 C -0.180 4.180 13 C -0.156 4.156 14 C -0.032 4.032 15 N -0.361 5.361 16 C 0.341 3.659 17 O -0.384 6.384 18 C -0.298 4.298 19 S 0.167 5.833 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.206 1.206 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.238 0.762 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.257 -3.239 -24.895 26.132 hybrid contribution 1.484 -1.801 0.298 2.353 sum 8.741 -5.040 -24.597 26.586 Atomic orbital electron populations 1.22152 0.93419 1.02942 1.03594 1.21790 0.95707 0.95432 0.83625 0.90597 1.23182 0.94732 1.01341 0.98129 1.21954 0.96490 0.88085 0.90697 0.87458 1.45994 1.07506 1.24945 1.58759 1.20630 0.82014 0.87063 0.79299 1.90721 1.53193 1.48668 1.48432 1.22825 0.99530 0.93278 1.00443 1.22841 0.98763 0.95073 0.99525 1.22837 0.97575 0.96613 1.00999 1.22819 0.93345 0.96175 1.03245 1.22352 0.88381 0.97375 0.95128 1.48519 1.28285 1.49815 1.09438 1.19969 0.83644 0.81238 0.81075 1.90651 1.24477 1.42503 1.80802 1.23526 1.04555 1.01720 1.00035 1.85351 1.36248 1.64352 0.97363 1.22902 1.14833 1.33399 0.97092 0.90929 1.24990 0.95355 0.95968 0.97267 1.70028 1.23248 1.40647 1.16372 0.86119 0.79618 0.79711 0.80074 1.19617 1.20534 1.20551 0.92586 0.89038 0.92342 0.89875 0.89275 0.76233 0.86942 0.89410 0.90542 0.89896 0.90828 0.91049 0.88587 0.91078 0.90722 0.89497 0.89364 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 8.66 37.16 0.32 -1.68 16 2 C 0.14 1.59 3.76 -66.42 -0.25 1.34 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.14 -1.05 6.13 -24.59 -0.15 -1.20 16 5 C 0.13 1.22 3.32 -66.09 -0.22 1.00 16 6 H 0.11 1.11 7.55 -51.93 -0.39 0.71 16 7 N -0.72 -5.40 5.10 -52.03 -0.27 -5.67 16 8 C 0.52 4.92 7.35 -10.99 -0.08 4.84 16 9 O -0.53 -7.27 15.54 5.55 0.09 -7.18 16 10 C -0.14 -0.91 4.15 -90.96 -0.38 -1.29 16 11 C -0.12 -0.77 7.63 -25.92 -0.20 -0.96 16 12 C -0.14 -0.81 8.08 -25.90 -0.21 -1.02 16 13 C -0.12 -0.84 7.41 -25.90 -0.19 -1.03 16 14 C 0.09 1.11 6.24 -3.07 -0.02 1.09 16 15 N -0.62 -9.02 3.24 -163.05 -0.53 -9.55 16 16 C 0.55 10.66 7.65 -10.99 -0.08 10.58 16 17 O -0.51 -11.43 13.56 5.55 0.08 -11.36 16 18 C -0.15 -3.11 5.35 36.00 0.19 -2.92 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 24 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.45 6.00 -51.93 -0.31 1.13 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.58 7.93 -51.93 -0.41 0.17 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.40 1.97 8.56 -40.82 -0.35 1.62 16 34 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.36 8.14 -51.94 -0.42 -0.06 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.10 0.88 7.43 -51.93 -0.39 0.49 16 41 H 0.07 0.84 8.03 -51.93 -0.42 0.42 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 44 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -35.68 380.24 -9.78 -45.46 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.30 Total: -0.24 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.07 Total: -4.35 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.06 Total: -40.80 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.16 Total: -18.54 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.68 -9.78 -45.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756579231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.942 kcal (2) G-P(sol) polarization free energy of solvation -35.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds