Wall clock time and date at job start Tue Mar 31 2020 14:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.99442 * 2 1 4 4 C 1.54330 * 109.99122 * 238.96840 * 2 1 3 5 5 C 1.55155 * 103.01848 * 218.65961 * 4 2 1 6 6 H 1.09005 * 111.00276 * 153.37591 * 5 4 2 7 7 N 1.46500 * 111.00814 * 277.23302 * 5 4 2 8 8 C 1.34777 * 119.99771 * 198.65027 * 7 5 4 9 9 O 1.21278 * 120.00221 * 359.97438 * 8 7 5 10 10 C 1.50698 * 119.99617 * 179.97438 * 8 7 5 11 11 C 1.53783 * 113.61991 * 277.49916 * 10 8 7 12 12 C 1.53780 * 87.08175 * 220.01708 * 11 10 8 13 13 C 1.53778 * 113.61571 * 179.97438 * 10 8 7 14 14 C 1.54912 * 101.58286 * 35.30933 * 5 4 2 15 15 N 1.47013 * 109.88485 * 121.09510 * 2 1 3 16 16 C 1.34781 * 125.65407 * 298.40099 * 15 2 1 17 17 O 1.21276 * 119.99264 * 359.71002 * 16 15 2 18 18 C 1.50692 * 120.00195 * 179.71328 * 16 15 2 19 19 S 1.81006 * 109.47105 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99914 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00471 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99691 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00298 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99999 * 179.72513 * 22 20 19 25 25 H 1.48501 * 109.47085 * 270.27637 * 24 22 20 26 26 H 1.48505 * 109.46880 * 30.27468 * 24 22 20 27 27 H 1.48490 * 109.47245 * 150.27795 * 24 22 20 28 28 H 1.09003 * 109.47495 * 300.35085 * 1 2 3 29 29 H 1.08998 * 109.47439 * 60.35668 * 1 2 3 30 30 H 1.09001 * 109.46803 * 180.35658 * 1 2 3 31 31 H 1.09003 * 110.85376 * 100.19601 * 4 2 1 32 32 H 1.09000 * 110.66794 * 337.04564 * 4 2 1 33 33 H 0.96994 * 119.99686 * 18.65024 * 7 5 4 34 34 H 1.09010 * 112.84736 * 48.80709 * 10 8 7 35 35 H 1.08994 * 113.61222 * 334.57022 * 11 10 8 36 36 H 1.08998 * 113.61505 * 105.46633 * 11 10 8 37 37 H 1.08998 * 113.61793 * 270.88181 * 12 11 10 38 38 H 1.09004 * 113.68838 * 139.98849 * 12 11 10 39 39 H 1.08998 * 113.61579 * 254.53348 * 13 10 8 40 40 H 1.08999 * 113.61316 * 25.35365 * 13 10 8 41 41 H 1.09000 * 110.36590 * 204.14977 * 14 5 4 42 42 H 1.09000 * 110.45963 * 81.87092 * 14 5 4 43 43 H 1.09005 * 109.47474 * 60.00137 * 18 16 15 44 44 H 1.08998 * 109.47483 * 300.00158 * 18 16 15 45 45 H 0.97005 * 119.99723 * 359.71970 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7476 -1.2427 5 6 3.2864 -1.5181 -0.6916 6 1 3.4807 -2.4154 -1.2793 7 7 4.4699 -0.6559 -0.6464 8 6 5.6991 -1.2025 -0.5647 9 8 5.8255 -2.4081 -0.5280 10 6 6.9166 -0.3156 -0.5188 11 6 7.3840 0.1614 -1.9041 12 6 8.8226 -0.0612 -1.4084 13 6 8.2409 -1.0916 -0.4255 14 6 2.8100 -1.8825 0.7367 15 7 2.0300 -0.7140 1.1838 16 6 1.8074 -0.3621 2.4657 17 8 1.1475 0.6236 2.7180 18 6 2.3784 -1.1935 3.5854 19 16 1.9088 -0.4678 5.1757 20 6 2.6867 -1.6061 6.2730 21 1 3.2440 -2.4425 5.8776 22 6 2.5823 -1.4284 7.6456 23 7 1.9019 -0.4099 8.1276 24 14 3.4005 -2.6394 8.8090 25 1 2.4543 -3.7398 9.1238 26 1 4.6156 -3.2004 8.1653 27 1 3.7821 -1.9409 10.0626 28 1 -0.3634 0.5193 0.8868 29 1 -0.3634 0.5083 -0.8931 30 1 -0.3633 -1.0277 0.0064 31 1 2.3597 -0.0448 -2.0192 32 1 1.3066 -1.4403 -1.6226 33 1 4.3688 0.3083 -0.6753 34 1 6.8284 0.4867 0.2139 35 1 7.0938 -0.5051 -2.7161 36 1 7.1492 1.2061 -2.1083 37 1 9.2561 0.8115 -0.9199 38 1 9.4818 -0.4972 -2.1590 39 1 8.6979 -1.0581 0.5635 40 1 8.1848 -2.1014 -0.8319 41 1 3.6657 -2.0411 1.3931 42 1 2.1807 -2.7721 0.7131 43 1 3.4652 -1.2160 3.5035 44 1 1.9880 -2.2090 3.5195 45 1 1.4767 0.2188 7.5235 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756579232.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:59 Heat of formation + Delta-G solvation = -61.701828 kcal Electronic energy + Delta-G solvation = -25708.273033 eV Core-core repulsion = 22045.092578 eV Total energy + Delta-G solvation = -3663.180455 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86372 -39.88540 -38.02998 -37.09558 -34.27465 -32.52590 -32.26911 -30.44890 -28.84940 -26.94977 -26.08869 -25.96014 -24.84814 -22.87467 -21.78356 -20.77363 -19.69754 -19.05672 -18.19400 -17.76785 -17.16557 -16.61349 -15.94817 -15.50942 -15.24490 -14.97894 -14.69857 -14.29754 -14.06031 -13.84150 -13.82803 -13.28534 -13.02569 -12.92123 -12.80715 -12.58918 -12.40354 -12.32715 -12.31361 -12.02233 -11.77372 -11.69904 -11.54908 -11.44008 -10.97909 -10.90235 -10.89399 -10.74901 -10.18304 -9.92376 -9.62073 -9.55658 -9.35999 -9.00913 -8.57192 -8.22504 -6.67544 -6.62186 -4.00015 2.36051 2.76788 2.85067 2.96199 3.33437 3.39639 3.44818 3.57317 4.06125 4.15437 4.17663 4.25145 4.28085 4.36669 4.46335 4.61341 4.82552 4.88415 4.96353 5.12373 5.19200 5.22592 5.22849 5.30127 5.33503 5.40820 5.41948 5.44051 5.50626 5.51377 5.57323 5.60769 5.65642 5.75945 5.78042 5.92748 6.02515 6.05962 6.17008 6.21488 6.43989 7.20665 7.56412 7.93535 7.96839 8.45309 8.50450 9.27140 10.81816 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010448 B = 0.003426 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.337391 B = 8170.726651 C =10117.497376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.134 4.134 5 C 0.132 3.868 6 H 0.109 0.891 7 N -0.719 5.719 8 C 0.526 3.474 9 O -0.537 6.537 10 C -0.141 4.141 11 C -0.122 4.122 12 C -0.142 4.142 13 C -0.118 4.118 14 C 0.090 3.910 15 N -0.620 5.620 16 C 0.550 3.450 17 O -0.514 6.514 18 C -0.125 4.125 19 S -0.116 6.116 20 C -0.606 4.606 21 H 0.066 0.934 22 C 0.036 3.964 23 N -0.885 5.885 24 Si 1.086 2.914 25 H -0.284 1.284 26 H -0.287 1.287 27 H -0.279 1.279 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.402 0.598 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.827 0.195 -25.396 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.092 0.908 4 C -0.172 4.172 5 C 0.027 3.973 6 H 0.127 0.873 7 N -0.370 5.370 8 C 0.312 3.688 9 O -0.413 6.413 10 C -0.162 4.162 11 C -0.160 4.160 12 C -0.180 4.180 13 C -0.156 4.156 14 C -0.035 4.035 15 N -0.357 5.357 16 C 0.338 3.662 17 O -0.388 6.388 18 C -0.276 4.276 19 S 0.110 5.890 20 C -0.755 4.755 21 H 0.084 0.916 22 C -0.175 4.175 23 N -0.519 5.519 24 Si 0.912 3.088 25 H -0.210 1.210 26 H -0.213 1.213 27 H -0.205 1.205 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.237 0.763 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.148 0.484 -23.299 24.376 hybrid contribution 0.464 -0.531 -1.820 1.952 sum 7.612 -0.047 -25.119 26.247 Atomic orbital electron populations 1.22138 0.94495 1.02422 1.03065 1.21494 0.95012 0.96210 0.84186 0.90821 1.23070 0.96811 1.00205 0.97098 1.22045 0.84583 0.94782 0.95928 0.87291 1.45951 1.05307 1.10329 1.75416 1.20574 0.84180 0.89034 0.74965 1.90701 1.86444 1.15039 1.49109 1.22835 0.93110 0.99700 1.00572 1.22813 0.96578 1.01686 0.94938 1.22838 0.96087 0.99716 0.99323 1.22816 0.93157 0.99115 1.00517 1.22741 0.95953 0.89149 0.95650 1.48567 1.53902 1.28490 1.04785 1.19947 0.79719 0.85062 0.81474 1.90690 1.38727 1.26828 1.82599 1.23298 1.03672 1.02394 0.98196 1.84765 1.71069 1.39253 0.93871 1.23728 1.41592 1.15060 0.95069 0.91609 1.26055 0.95997 0.99495 0.95929 1.70775 1.29559 1.12654 1.38918 0.83297 0.75708 0.74551 0.75194 1.21022 1.21263 1.20487 0.90772 0.91916 0.92451 0.89346 0.88734 0.76348 0.86788 0.89738 0.90675 0.89798 0.90966 0.90819 0.88679 0.89958 0.90350 0.89269 0.89135 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.11 37.16 0.34 -1.47 16 2 C 0.13 1.44 3.45 -66.95 -0.23 1.21 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -0.93 6.05 -24.89 -0.15 -1.08 16 5 C 0.13 1.17 3.32 -65.78 -0.22 0.95 16 6 H 0.11 0.96 7.73 -51.93 -0.40 0.56 16 7 N -0.72 -6.23 5.22 -51.73 -0.27 -6.50 16 8 C 0.53 5.55 7.35 -10.99 -0.08 5.47 16 9 O -0.54 -7.61 15.64 5.56 0.09 -7.52 16 10 C -0.14 -1.15 4.15 -90.96 -0.38 -1.53 16 11 C -0.12 -0.76 7.63 -25.92 -0.20 -0.96 16 12 C -0.14 -0.89 8.08 -25.90 -0.21 -1.10 16 13 C -0.12 -1.00 7.41 -25.90 -0.19 -1.19 16 14 C 0.09 1.04 6.38 -2.52 -0.02 1.03 16 15 N -0.62 -8.62 3.06 -163.01 -0.50 -9.12 16 16 C 0.55 10.50 7.66 -10.99 -0.08 10.42 16 17 O -0.51 -11.54 14.91 5.56 0.08 -11.45 16 18 C -0.12 -2.64 5.16 36.00 0.19 -2.46 16 19 S -0.12 -3.17 19.60 -107.50 -2.11 -5.28 16 20 C -0.61 -17.81 9.50 30.94 0.29 -17.51 16 21 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 22 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 23 N -0.88 -27.78 13.67 55.49 0.76 -27.03 16 24 Si 1.09 25.40 29.92 -169.99 -5.09 20.31 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 28 H 0.07 1.09 6.89 -51.93 -0.36 0.73 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.56 7.85 -51.93 -0.41 0.15 16 33 H 0.40 2.81 8.62 -40.82 -0.35 2.46 16 34 H 0.11 0.85 8.14 -51.92 -0.42 0.42 16 35 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.94 7.43 -51.93 -0.39 0.55 16 41 H 0.08 1.11 7.48 -51.93 -0.39 0.72 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.09 1.82 7.85 -51.91 -0.41 1.42 16 44 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 45 H 0.28 8.90 7.13 -40.82 -0.29 8.61 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -36.52 380.52 -9.60 -46.12 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.27 Total: 2.02 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.03 Total: -7.28 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.01 Total: -42.65 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: 0.17 Total: -18.98 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.09 Total: 20.31 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.11 Total: -5.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.52 -9.60 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756579232.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.577 kcal (2) G-P(sol) polarization free energy of solvation -36.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds