Wall clock time and date at job start Tue Mar 31 2020 15:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99834 * 2 1 4 4 C 1.52999 * 109.46970 * 264.43233 * 3 2 1 5 5 H 1.08999 * 112.96706 * 294.26320 * 4 3 2 6 6 C 1.53951 * 113.77010 * 65.94240 * 4 3 2 7 7 C 1.53941 * 86.29133 * 137.90787 * 6 4 3 8 8 N 1.47579 * 113.76769 * 162.58233 * 4 3 2 9 9 C 1.36936 * 134.49286 * 41.07226 * 8 4 3 10 10 H 1.07996 * 119.99919 * 4.67959 * 9 8 4 11 11 C 1.38816 * 119.99988 * 184.68198 * 9 8 4 12 12 N 1.31616 * 119.99961 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99949 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46955 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46961 * 120.00142 * 13 11 9 16 16 H 1.48501 * 109.47108 * 240.00052 * 13 11 9 17 17 C 1.34772 * 120.00180 * 179.97438 * 2 1 3 18 18 O 1.21512 * 119.99831 * 174.45662 * 17 2 1 19 19 C 1.48226 * 120.00162 * 354.74039 * 17 2 1 20 20 C 1.40573 * 119.75335 * 173.05205 * 19 17 2 21 21 N 1.31255 * 120.57699 * 179.97438 * 20 19 17 22 22 C 1.33786 * 119.80663 * 359.97438 * 21 20 19 23 23 C 1.40543 * 121.00617 * 180.02562 * 22 21 20 24 24 C 1.36083 * 119.74975 * 179.97438 * 23 22 21 25 25 C 1.39470 * 121.02001 * 0.02562 * 24 23 22 26 26 C 1.35986 * 120.98359 * 359.97166 * 25 24 23 27 27 C 1.40826 * 119.69775 * 0.04682 * 26 25 24 28 28 N 1.32172 * 119.74511 * 352.77023 * 19 17 2 29 29 H 1.08994 * 109.47062 * 264.83650 * 1 2 3 30 30 H 1.09000 * 109.46830 * 24.84138 * 1 2 3 31 31 H 1.08998 * 109.46478 * 144.83910 * 1 2 3 32 32 H 1.08999 * 109.47178 * 24.43127 * 3 2 1 33 33 H 1.09002 * 109.47210 * 144.43047 * 3 2 1 34 34 H 1.09001 * 113.73929 * 252.25155 * 6 4 3 35 35 H 1.08995 * 113.73958 * 23.45275 * 6 4 3 36 36 H 1.08998 * 113.77374 * 90.68725 * 7 6 4 37 37 H 1.08999 * 113.77053 * 221.98343 * 7 6 4 38 38 H 0.96998 * 119.99760 * 180.02562 * 12 11 9 39 39 H 1.08004 * 119.70830 * 359.97438 * 20 19 17 40 40 H 1.07995 * 120.12208 * 0.02562 * 23 22 21 41 41 H 1.08000 * 119.48814 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.51209 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.15475 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5737 1.6405 -1.4357 5 1 3.2840 0.9451 -1.8828 6 6 1.3627 1.9531 -2.3333 7 6 2.1973 3.1254 -2.8802 8 7 2.9428 3.0592 -1.6055 9 6 3.6791 3.9533 -0.8751 10 1 4.1980 3.6267 0.0140 11 6 3.7587 5.2795 -1.2775 12 7 3.1267 5.6774 -2.3613 13 14 4.7626 6.4994 -0.2806 14 1 5.3708 5.8059 0.8830 15 1 5.8364 7.0701 -1.1329 16 1 3.8789 7.5919 0.2000 17 6 2.1389 -1.1671 0.0005 18 8 3.3498 -1.1696 -0.1011 19 6 1.4026 -2.4481 0.1188 20 6 2.0912 -3.6648 -0.0278 21 7 1.4553 -4.8085 0.0742 22 6 0.1404 -4.8186 0.3204 23 6 -0.5654 -6.0285 0.4351 24 6 -1.9027 -6.0089 0.6865 25 6 -2.5890 -4.8036 0.8325 26 6 -1.9416 -3.6123 0.7285 27 6 -0.5577 -3.5907 0.4686 28 7 0.1044 -2.4377 0.3668 29 1 -0.3633 -0.0925 1.0234 30 1 -0.3633 0.9326 -0.4317 31 1 -0.3632 -0.8402 -0.5918 32 1 1.5689 2.0512 0.4250 33 1 3.1031 1.1655 0.5978 34 1 1.1538 1.1805 -3.0732 35 1 0.4757 2.2637 -1.7811 36 1 2.7982 2.8678 -3.7523 37 1 1.6284 4.0457 -3.0124 38 1 3.1826 6.6040 -2.6426 39 1 3.1529 -3.6584 -0.2262 40 1 -0.0483 -6.9701 0.3251 41 1 -2.4410 -6.9412 0.7734 42 1 -3.6505 -4.8165 1.0311 43 1 -2.4864 -2.6868 0.8435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085640195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:30 Heat of formation + Delta-G solvation = 116.429572 kcal Electronic energy + Delta-G solvation = -26901.131012 eV Core-core repulsion = 23142.523713 eV Total energy + Delta-G solvation = -3758.607298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87718 -39.76828 -37.98449 -37.44130 -35.69424 -34.79033 -32.12678 -31.37447 -31.00869 -28.60268 -27.82495 -26.79057 -25.59909 -24.71441 -23.31315 -22.72008 -22.48119 -20.33103 -19.11157 -18.73034 -18.51520 -17.26033 -16.69976 -16.05243 -16.00299 -15.91220 -15.26730 -15.02751 -14.78764 -14.66767 -14.20558 -14.03651 -13.60166 -13.53639 -12.94622 -12.84573 -12.40671 -12.31931 -12.25272 -12.18140 -12.15849 -12.03450 -11.45648 -11.38427 -10.97191 -10.77086 -10.67682 -10.41981 -10.31147 -9.79092 -9.69502 -9.56632 -9.36484 -9.24024 -9.00815 -8.74104 -8.35701 -6.82149 -5.71407 -3.04586 -0.33187 0.06339 1.46475 2.14489 2.89404 2.98201 3.41757 3.47573 3.49826 3.55280 3.70421 3.73231 3.87041 4.31374 4.42171 4.50779 4.55663 4.70901 4.81793 4.96937 5.19740 5.37056 5.40932 5.44316 5.50022 5.61554 5.62312 5.67929 5.75623 5.84630 5.88247 5.97707 6.04073 6.21917 6.22422 6.28952 6.46876 6.60333 6.73973 6.79157 6.85249 7.25472 7.30503 7.45373 7.52752 7.64282 8.03833 8.13925 9.09544 9.76050 10.65901 11.44918 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028371 B = 0.002547 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.681495 B =10992.512556 C =11333.163563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.580 5.580 3 C 0.117 3.883 4 C 0.131 3.869 5 H 0.050 0.950 6 C -0.158 4.158 7 C 0.156 3.844 8 N -0.602 5.602 9 C -0.219 4.219 10 H 0.079 0.921 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.910 3.090 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.563 3.437 18 O -0.523 6.523 19 C 0.067 3.933 20 C 0.130 3.870 21 N -0.428 5.428 22 C 0.091 3.909 23 C -0.088 4.088 24 C -0.091 4.091 25 C -0.104 4.104 26 C -0.074 4.074 27 C 0.070 3.930 28 N -0.385 5.385 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.023 0.977 37 H 0.078 0.922 38 H 0.252 0.748 39 H 0.188 0.812 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.434 -23.165 5.873 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.311 5.311 3 C -0.006 4.006 4 C 0.023 3.977 5 H 0.068 0.932 6 C -0.196 4.196 7 C 0.031 3.969 8 N -0.329 5.329 9 C -0.347 4.347 10 H 0.097 0.903 11 C -0.205 4.205 12 N -0.568 5.568 13 Si 0.740 3.260 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.347 3.653 18 O -0.398 6.398 19 C -0.089 4.089 20 C -0.045 4.045 21 N -0.141 5.141 22 C -0.034 4.034 23 C -0.108 4.108 24 C -0.112 4.112 25 C -0.124 4.124 26 C -0.093 4.093 27 C -0.056 4.056 28 N -0.103 5.103 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.205 0.795 40 H 0.159 0.841 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.792 -22.895 5.932 27.379 hybrid contribution 0.637 0.732 0.402 1.050 sum -13.154 -22.163 6.334 26.540 Atomic orbital electron populations 1.22147 0.78425 1.02821 1.02171 1.47752 1.07839 1.05732 1.69823 1.21933 0.96839 0.82332 0.99448 1.22531 0.93892 0.88651 0.92655 0.93211 1.23759 0.97487 0.99366 0.99019 1.22298 0.90747 0.95677 0.88198 1.46071 1.60694 1.04487 1.21615 1.19070 1.22628 0.88100 1.04901 0.90327 1.24772 1.00845 0.96861 0.98000 1.69831 1.46404 1.15887 1.24688 0.86077 0.79384 0.81339 0.79175 1.20438 1.21824 1.21762 1.17673 0.86548 0.82501 0.78536 1.90834 1.12763 1.86277 1.49956 1.22608 0.90861 0.96392 0.99042 1.24010 1.02210 0.86583 0.91712 1.68841 1.07335 1.28377 1.09549 1.19822 0.90903 0.94469 0.98240 1.20833 0.94075 0.96612 0.99247 1.21094 0.94046 0.98870 0.97152 1.21042 1.00852 0.91847 0.98639 1.20905 0.91080 0.99573 0.97765 1.19768 0.95821 0.89183 1.00831 1.69151 1.07335 1.27260 1.06597 0.92393 0.91180 0.89878 0.89347 0.90528 0.93488 0.90910 0.95930 0.90425 0.93803 0.79513 0.84127 0.84567 0.84484 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 8.86 59.85 0.53 1.59 16 2 N -0.58 -8.95 2.78 -182.55 -0.51 -9.46 16 3 C 0.12 2.16 5.19 -4.04 -0.02 2.14 16 4 C 0.13 2.76 4.53 -66.86 -0.30 2.46 16 5 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 6 C -0.16 -3.04 7.32 -25.79 -0.19 -3.23 16 7 C 0.16 3.75 7.64 -2.85 -0.02 3.73 16 8 N -0.60 -15.59 3.58 -169.73 -0.61 -16.19 16 9 C -0.22 -6.18 10.51 -15.06 -0.16 -6.34 16 10 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -27.51 11.32 55.49 0.63 -26.89 16 13 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 C 0.56 8.96 7.61 -12.16 -0.09 8.87 16 18 O -0.52 -9.80 16.08 5.35 0.09 -9.72 16 19 C 0.07 0.90 6.56 -82.74 -0.54 0.35 16 20 C 0.13 1.61 10.75 -16.92 -0.18 1.43 16 21 N -0.43 -5.18 10.45 -10.53 -0.11 -5.29 16 22 C 0.09 0.98 6.60 -84.70 -0.56 0.42 16 23 C -0.09 -0.69 9.98 -39.49 -0.39 -1.08 16 24 C -0.09 -0.50 9.95 -39.90 -0.40 -0.89 16 25 C -0.10 -0.56 9.95 -39.93 -0.40 -0.96 16 26 C -0.07 -0.56 9.99 -39.41 -0.39 -0.95 16 27 C 0.07 0.75 6.60 -84.79 -0.56 0.19 16 28 N -0.38 -4.64 6.29 -7.39 -0.05 -4.68 16 29 H 0.06 0.65 8.00 -51.93 -0.42 0.23 16 30 H 0.07 0.83 6.67 -51.93 -0.35 0.49 16 31 H 0.08 0.97 5.78 -51.93 -0.30 0.67 16 32 H 0.09 1.62 8.03 -51.93 -0.42 1.20 16 33 H 0.08 1.52 7.68 -51.93 -0.40 1.12 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.31 6.96 -51.93 -0.36 0.95 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 2.03 6.98 -51.93 -0.36 1.67 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.19 2.08 7.64 -52.48 -0.40 1.68 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 43 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -33.77 359.45 -9.45 -43.22 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.51 Total: -1.20 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -3.78 Total: 7.39 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: -0.64 Total: -62.51 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.77 -9.45 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085640195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.652 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds