Wall clock time and date at job start Tue Mar 31 2020 15:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46505 * 119.99834 * 2 1 4 4 C 1.52999 * 109.46970 * 264.43233 * 3 2 1 5 5 H 1.08999 * 112.96706 * 294.26320 * 4 3 2 6 6 C 1.53951 * 113.77010 * 65.94240 * 4 3 2 7 7 C 1.53941 * 86.29133 * 137.90787 * 6 4 3 8 8 N 1.47579 * 113.76769 * 162.58233 * 4 3 2 9 9 C 1.36936 * 134.49286 * 41.07226 * 8 4 3 10 10 H 1.07996 * 119.99919 * 4.67959 * 9 8 4 11 11 C 1.38816 * 119.99988 * 184.68198 * 9 8 4 12 12 N 1.31616 * 119.99961 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99949 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46955 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46961 * 120.00142 * 13 11 9 16 16 H 1.48501 * 109.47108 * 240.00052 * 13 11 9 17 17 C 1.34772 * 120.00180 * 179.97438 * 2 1 3 18 18 O 1.21512 * 119.99831 * 174.45662 * 17 2 1 19 19 C 1.48226 * 120.00162 * 354.74039 * 17 2 1 20 20 C 1.40573 * 119.75335 * 173.05205 * 19 17 2 21 21 N 1.31255 * 120.57699 * 179.97438 * 20 19 17 22 22 C 1.33786 * 119.80663 * 359.97438 * 21 20 19 23 23 C 1.40543 * 121.00617 * 180.02562 * 22 21 20 24 24 C 1.36083 * 119.74975 * 179.97438 * 23 22 21 25 25 C 1.39470 * 121.02001 * 0.02562 * 24 23 22 26 26 C 1.35986 * 120.98359 * 359.97166 * 25 24 23 27 27 C 1.40826 * 119.69775 * 0.04682 * 26 25 24 28 28 N 1.32172 * 119.74511 * 352.77023 * 19 17 2 29 29 H 1.08994 * 109.47062 * 264.83650 * 1 2 3 30 30 H 1.09000 * 109.46830 * 24.84138 * 1 2 3 31 31 H 1.08998 * 109.46478 * 144.83910 * 1 2 3 32 32 H 1.08999 * 109.47178 * 24.43127 * 3 2 1 33 33 H 1.09002 * 109.47210 * 144.43047 * 3 2 1 34 34 H 1.09001 * 113.73929 * 252.25155 * 6 4 3 35 35 H 1.08995 * 113.73958 * 23.45275 * 6 4 3 36 36 H 1.08998 * 113.77374 * 90.68725 * 7 6 4 37 37 H 1.08999 * 113.77053 * 221.98343 * 7 6 4 38 38 H 0.96998 * 119.99760 * 180.02562 * 12 11 9 39 39 H 1.08004 * 119.70830 * 359.97438 * 20 19 17 40 40 H 1.07995 * 120.12208 * 0.02562 * 23 22 21 41 41 H 1.08000 * 119.48814 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.51209 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.15475 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5737 1.6405 -1.4357 5 1 3.2840 0.9451 -1.8828 6 6 1.3627 1.9531 -2.3333 7 6 2.1973 3.1254 -2.8802 8 7 2.9428 3.0592 -1.6055 9 6 3.6791 3.9533 -0.8751 10 1 4.1980 3.6267 0.0140 11 6 3.7587 5.2795 -1.2775 12 7 3.1267 5.6774 -2.3613 13 14 4.7626 6.4994 -0.2806 14 1 5.3708 5.8059 0.8830 15 1 5.8364 7.0701 -1.1329 16 1 3.8789 7.5919 0.2000 17 6 2.1389 -1.1671 0.0005 18 8 3.3498 -1.1696 -0.1011 19 6 1.4026 -2.4481 0.1188 20 6 2.0912 -3.6648 -0.0278 21 7 1.4553 -4.8085 0.0742 22 6 0.1404 -4.8186 0.3204 23 6 -0.5654 -6.0285 0.4351 24 6 -1.9027 -6.0089 0.6865 25 6 -2.5890 -4.8036 0.8325 26 6 -1.9416 -3.6123 0.7285 27 6 -0.5577 -3.5907 0.4686 28 7 0.1044 -2.4377 0.3668 29 1 -0.3633 -0.0925 1.0234 30 1 -0.3633 0.9326 -0.4317 31 1 -0.3632 -0.8402 -0.5918 32 1 1.5689 2.0512 0.4250 33 1 3.1031 1.1655 0.5978 34 1 1.1538 1.1805 -3.0732 35 1 0.4757 2.2637 -1.7811 36 1 2.7982 2.8678 -3.7523 37 1 1.6284 4.0457 -3.0124 38 1 3.1826 6.6040 -2.6426 39 1 3.1529 -3.6584 -0.2262 40 1 -0.0483 -6.9701 0.3251 41 1 -2.4410 -6.9412 0.7734 42 1 -3.6505 -4.8165 1.0311 43 1 -2.4864 -2.6868 0.8435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085640195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:29 Heat of formation + Delta-G solvation = 94.922665 kcal Electronic energy + Delta-G solvation = -26902.063621 eV Core-core repulsion = 23142.523713 eV Total energy + Delta-G solvation = -3759.539908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.69879 -40.99795 -39.54171 -38.28627 -36.83919 -35.81680 -34.21439 -32.20287 -31.62498 -29.98649 -29.85911 -27.82010 -26.53355 -25.64818 -25.29290 -24.06550 -23.26360 -21.49813 -20.86202 -19.49392 -19.45744 -18.70395 -18.15123 -17.31058 -17.12785 -16.95300 -16.64870 -16.15887 -15.88308 -15.79612 -15.37853 -15.20138 -15.02763 -14.68811 -14.18835 -14.03076 -13.91230 -13.78078 -13.35344 -12.96502 -12.92528 -12.90172 -12.86917 -12.69069 -12.66554 -12.55073 -12.25077 -12.03736 -11.80262 -11.59271 -11.48593 -11.32982 -10.84228 -10.17541 -10.10940 -9.69955 -9.60691 -8.89949 -7.88458 -5.23225 -1.10586 -0.68460 0.76489 1.31041 1.44982 1.46287 1.56383 1.70373 2.04119 2.47375 2.66406 2.92816 2.97959 3.10144 3.30654 3.39647 3.51364 3.71435 3.86363 3.96137 4.12652 4.17263 4.27051 4.28232 4.38709 4.39078 4.50813 4.67890 4.80549 4.84046 4.89681 4.92236 4.96309 5.01441 5.04394 5.15256 5.18066 5.24242 5.36862 5.41622 5.57151 5.70007 5.71626 5.95537 5.97077 6.22006 6.47360 6.90854 6.93700 7.61876 8.57964 9.27702 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028371 B = 0.002547 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.681495 B =10992.512556 C =11333.163563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.580 5.580 3 C 0.134 3.866 4 C 0.131 3.869 5 H 0.031 0.969 6 C -0.124 4.124 7 C 0.148 3.852 8 N -0.628 5.628 9 C -0.229 4.229 10 H 0.078 0.922 11 C -0.066 4.066 12 N -0.952 5.952 13 Si 0.976 3.024 14 H -0.268 1.268 15 H -0.295 1.295 16 H -0.287 1.287 17 C 0.564 3.436 18 O -0.562 6.562 19 C 0.045 3.955 20 C 0.118 3.882 21 N -0.440 5.440 22 C 0.075 3.925 23 C -0.109 4.109 24 C -0.067 4.067 25 C -0.086 4.086 26 C -0.085 4.085 27 C 0.052 3.948 28 N -0.380 5.380 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.010 0.990 37 H 0.053 0.947 38 H 0.248 0.752 39 H 0.186 0.814 40 H 0.151 0.849 41 H 0.177 0.823 42 H 0.177 0.823 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.883 -25.485 7.184 31.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.311 5.311 3 C 0.010 3.990 4 C 0.024 3.976 5 H 0.049 0.951 6 C -0.162 4.162 7 C 0.023 3.977 8 N -0.355 5.355 9 C -0.357 4.357 10 H 0.096 0.904 11 C -0.258 4.258 12 N -0.601 5.601 13 Si 0.804 3.196 14 H -0.192 1.192 15 H -0.222 1.222 16 H -0.214 1.214 17 C 0.350 3.650 18 O -0.441 6.441 19 C -0.109 4.109 20 C -0.056 4.056 21 N -0.154 5.154 22 C -0.051 4.051 23 C -0.128 4.128 24 C -0.087 4.087 25 C -0.106 4.106 26 C -0.104 4.104 27 C -0.075 4.075 28 N -0.099 5.099 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.203 0.797 40 H 0.169 0.831 41 H 0.194 0.806 42 H 0.195 0.805 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.252 -25.242 7.254 31.423 hybrid contribution 1.496 1.201 0.017 1.919 sum -15.756 -24.041 7.271 29.650 Atomic orbital electron populations 1.22302 0.76107 1.03499 1.03316 1.47753 1.09053 1.04491 1.69764 1.21491 0.96544 0.83923 0.97001 1.22576 0.94186 0.86034 0.94795 0.95099 1.23513 0.96665 0.97486 0.98510 1.22280 0.91279 0.96606 0.87585 1.46461 1.60563 1.06241 1.22232 1.19386 1.22411 0.88900 1.05016 0.90396 1.25586 1.02379 0.98605 0.99274 1.70009 1.47932 1.15891 1.26254 0.85048 0.77690 0.78901 0.77928 1.19240 1.22222 1.21391 1.18035 0.86242 0.83369 0.77383 1.90799 1.14579 1.87014 1.51682 1.22061 0.91575 0.95005 1.02272 1.23936 1.02317 0.86648 0.92702 1.68838 1.08457 1.28007 1.10074 1.20328 0.90583 0.95958 0.98184 1.21104 0.95291 0.95889 1.00491 1.21631 0.92997 1.00689 0.93337 1.21570 1.02636 0.90751 0.95626 1.21214 0.89621 1.01499 0.98064 1.20218 0.97204 0.88583 1.01483 1.69022 1.06566 1.28330 1.05992 0.91046 0.90492 0.89049 0.88918 0.92614 0.90681 0.88984 0.97238 0.92877 0.94275 0.79688 0.83083 0.80610 0.80516 0.82257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.03 8.86 127.77 1.13 3.16 16 2 N -0.58 -17.86 2.78 -849.75 -2.37 -20.22 16 3 C 0.13 5.01 5.19 86.38 0.45 5.46 16 4 C 0.13 5.64 4.53 45.09 0.20 5.85 16 5 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 6 C -0.12 -4.66 7.32 31.25 0.23 -4.43 16 7 C 0.15 7.28 7.64 86.43 0.66 7.94 16 8 N -0.63 -33.32 3.58 -690.90 -2.48 -35.80 16 9 C -0.23 -13.19 10.51 84.03 0.88 -12.30 16 10 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 11 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 12 N -0.95 -58.35 11.32 21.65 0.25 -58.11 16 13 Si 0.98 46.92 29.55 68.60 2.03 48.94 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 15 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 16 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 17 C 0.56 18.52 7.61 86.90 0.66 19.18 16 18 O -0.56 -22.33 16.08 -3.75 -0.06 -22.39 16 19 C 0.05 1.23 6.56 42.32 0.28 1.51 16 20 C 0.12 3.07 10.75 85.35 0.92 3.99 16 21 N -0.44 -10.75 10.45 -187.21 -1.96 -12.71 16 22 C 0.07 1.53 6.60 40.34 0.27 1.79 16 23 C -0.11 -1.37 9.98 22.33 0.22 -1.15 16 24 C -0.07 -0.38 9.95 22.07 0.22 -0.16 16 25 C -0.09 -0.47 9.95 22.04 0.22 -0.25 16 26 C -0.08 -0.97 9.99 22.38 0.22 -0.75 16 27 C 0.05 1.03 6.60 40.48 0.27 1.29 16 28 N -0.38 -8.82 6.29 -177.28 -1.12 -9.94 16 29 H 0.07 1.44 8.00 -2.39 -0.02 1.43 16 30 H 0.08 1.64 6.67 -2.39 -0.02 1.63 16 31 H 0.09 1.96 5.78 -2.39 -0.01 1.95 16 32 H 0.09 3.37 8.03 -2.39 -0.02 3.35 16 33 H 0.06 2.30 7.68 -2.39 -0.02 2.28 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.09 3.14 6.96 -2.39 -0.02 3.12 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.05 2.87 6.98 -2.39 -0.02 2.85 16 38 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 39 H 0.19 4.58 7.64 -2.91 -0.02 4.56 16 40 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 41 H 0.18 -0.30 8.06 -2.91 -0.02 -0.32 16 42 H 0.18 -0.34 8.06 -2.91 -0.02 -0.36 16 43 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -77.14 359.45 2.63 -74.51 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.03 Total: 7.96 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: 7.30 Total: 27.77 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -7.67 Total: -136.78 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.06 Total: -22.39 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -77.14 2.63 -74.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085640195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.432 kcal (2) G-P(sol) polarization free energy of solvation -77.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds