Wall clock time and date at job start Tue Mar 31 2020 15:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00252 * 2 1 4 4 C 1.53002 * 109.46977 * 275.63337 * 3 2 1 5 5 H 1.08996 * 112.96737 * 67.62171 * 4 3 2 6 6 C 1.53944 * 113.76539 * 295.94058 * 4 3 2 7 7 C 1.53944 * 86.29332 * 222.09511 * 6 4 3 8 8 N 1.47588 * 86.23614 * 23.55223 * 7 6 4 9 9 C 1.36941 * 134.48850 * 155.42628 * 8 7 6 10 10 H 1.08000 * 119.99990 * 185.39714 * 9 8 7 11 11 C 1.38807 * 120.00026 * 5.39532 * 9 8 7 12 12 N 1.31616 * 120.00464 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99917 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47448 * 89.99708 * 13 11 9 15 15 H 1.48500 * 109.47186 * 210.00295 * 13 11 9 16 16 H 1.48505 * 109.47192 * 329.99680 * 13 11 9 17 17 C 1.34781 * 120.00025 * 179.97438 * 2 1 3 18 18 O 1.21498 * 119.99931 * 185.36080 * 17 2 1 19 19 C 1.48239 * 119.99869 * 5.35653 * 17 2 1 20 20 C 1.40571 * 119.74585 * 185.83477 * 19 17 2 21 21 N 1.31257 * 120.56962 * 179.74851 * 20 19 17 22 22 C 1.33786 * 119.80544 * 0.51974 * 21 20 19 23 23 C 1.40544 * 120.99807 * 179.71646 * 22 21 20 24 24 C 1.36073 * 119.75259 * 180.02562 * 23 22 21 25 25 C 1.39482 * 121.01792 * 359.97438 * 24 23 22 26 26 C 1.35990 * 120.97813 * 0.02562 * 25 24 23 27 27 C 1.40820 * 119.70362 * 0.02562 * 26 25 24 28 28 N 1.32163 * 119.74677 * 6.11071 * 19 17 2 29 29 H 1.09001 * 109.46619 * 95.78684 * 1 2 3 30 30 H 1.09003 * 109.47020 * 215.78194 * 1 2 3 31 31 H 1.08991 * 109.47188 * 335.78496 * 1 2 3 32 32 H 1.08996 * 109.47287 * 155.62531 * 3 2 1 33 33 H 1.09005 * 109.46899 * 35.62924 * 3 2 1 34 34 H 1.09004 * 113.74241 * 107.75062 * 6 4 3 35 35 H 1.09004 * 113.84328 * 336.45363 * 6 4 3 36 36 H 1.08996 * 113.77005 * 137.90988 * 7 6 4 37 37 H 1.09000 * 113.77322 * 269.20114 * 7 6 4 38 38 H 0.96998 * 120.00453 * 180.02562 * 12 11 9 39 39 H 1.08000 * 119.71724 * 359.97438 * 20 19 17 40 40 H 1.07997 * 120.12034 * 359.97438 * 23 22 21 41 41 H 1.08006 * 119.49398 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.50804 * 179.97438 * 25 24 23 43 43 H 1.08006 * 120.14831 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3299 1.7811 -1.4356 5 1 1.3760 2.0796 -1.8703 6 6 3.1675 0.8653 -2.3464 7 6 3.7991 2.1571 -2.8962 8 7 3.4055 2.7786 -1.6168 9 6 3.8567 3.8485 -0.8907 10 1 3.4412 4.0528 0.0849 11 6 4.8482 4.6703 -1.4088 12 7 5.3543 4.4216 -2.5980 13 14 5.4642 6.1292 -0.4181 14 1 6.6062 5.7045 0.4308 15 1 5.9071 7.2037 -1.3424 16 1 4.3687 6.6394 0.4451 17 6 2.1389 -1.1672 0.0005 18 8 3.3499 -1.1695 0.0988 19 6 1.4026 -2.4483 -0.1188 20 6 2.0953 -3.6651 0.0056 21 7 1.4586 -4.8087 -0.0923 22 6 0.1407 -4.8185 -0.3227 23 6 -0.5649 -6.0285 -0.4380 24 6 -1.9050 -6.0089 -0.6730 25 6 -2.5946 -4.8034 -0.8018 26 6 -1.9473 -3.6120 -0.6966 27 6 -0.5602 -3.5905 -0.4547 28 7 0.1008 -2.4376 -0.3466 29 1 -0.3632 -0.1036 -1.0225 30 1 -0.3633 -0.8337 0.6009 31 1 -0.3633 0.9372 0.4215 32 1 3.1898 1.1153 0.4241 33 1 1.6558 2.0010 0.5987 34 1 2.5768 0.3184 -3.0814 35 1 3.8689 0.2292 -1.8066 36 1 4.8776 2.0922 -3.0398 37 1 3.2787 2.5667 -3.7620 38 1 6.0474 4.9957 -2.9599 39 1 3.1599 -3.6590 0.1869 40 1 -0.0453 -6.9703 -0.3412 41 1 -2.4431 -6.9412 -0.7613 42 1 -3.6583 -4.8163 -0.9886 43 1 -2.4947 -2.6865 -0.7982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085640196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:35 Heat of formation + Delta-G solvation = 116.968806 kcal Electronic energy + Delta-G solvation = -27045.191356 eV Core-core repulsion = 23286.607440 eV Total energy + Delta-G solvation = -3758.583915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.86087 -39.77309 -37.92809 -37.36837 -35.70585 -34.79836 -32.11809 -31.35428 -30.99547 -28.54671 -27.76959 -26.80226 -25.63530 -24.72361 -23.23714 -22.71585 -22.45869 -20.31458 -18.94274 -18.71269 -18.58450 -17.23870 -16.63055 -16.17580 -16.00126 -15.83865 -15.25918 -15.06579 -14.74099 -14.62731 -14.17476 -13.96039 -13.67840 -13.50387 -12.98073 -12.88097 -12.37291 -12.28123 -12.24910 -12.17319 -12.11370 -12.01670 -11.34077 -11.27287 -10.99925 -10.82643 -10.67052 -10.41416 -10.24782 -9.81821 -9.66600 -9.46260 -9.34491 -9.21556 -8.99737 -8.73985 -8.33816 -6.80299 -5.70475 -3.02180 -0.31559 0.08060 1.48021 2.16230 2.89089 3.02821 3.43413 3.47392 3.49619 3.56452 3.72309 3.75061 3.88640 4.32499 4.43567 4.52069 4.56900 4.72310 4.83239 4.98020 5.19795 5.40984 5.41322 5.45589 5.48924 5.58905 5.63409 5.68236 5.78483 5.88725 5.90253 5.97286 6.03102 6.13835 6.24141 6.39963 6.56753 6.69303 6.79139 6.82320 6.83220 7.26838 7.33469 7.45630 7.57503 7.66429 8.04645 8.17448 9.10712 9.77286 10.68283 11.47226 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.029522 B = 0.002602 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.210914 B =10759.703973 C =10973.653695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.584 5.584 3 C 0.112 3.888 4 C 0.129 3.871 5 H 0.043 0.957 6 C -0.161 4.161 7 C 0.166 3.834 8 N -0.600 5.600 9 C -0.222 4.222 10 H 0.079 0.921 11 C -0.008 4.008 12 N -0.920 5.920 13 Si 0.910 3.090 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.567 3.433 18 O -0.517 6.517 19 C 0.068 3.932 20 C 0.130 3.870 21 N -0.428 5.428 22 C 0.090 3.910 23 C -0.088 4.088 24 C -0.092 4.092 25 C -0.104 4.104 26 C -0.074 4.074 27 C 0.070 3.930 28 N -0.385 5.385 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.026 0.974 38 H 0.253 0.747 39 H 0.188 0.812 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.969 -21.174 4.396 28.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.315 5.315 3 C -0.011 4.011 4 C 0.021 3.979 5 H 0.061 0.939 6 C -0.199 4.199 7 C 0.041 3.959 8 N -0.326 5.326 9 C -0.350 4.350 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.351 3.649 18 O -0.392 6.392 19 C -0.089 4.089 20 C -0.045 4.045 21 N -0.141 5.141 22 C -0.034 4.034 23 C -0.107 4.107 24 C -0.112 4.112 25 C -0.124 4.124 26 C -0.094 4.094 27 C -0.056 4.056 28 N -0.104 5.104 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.205 0.795 40 H 0.159 0.841 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.258 -20.933 4.482 27.497 hybrid contribution 0.137 1.030 0.316 1.086 sum -17.121 -19.903 4.797 26.688 Atomic orbital electron populations 1.22097 0.78677 1.02149 1.02569 1.47686 1.07653 1.05858 1.70298 1.21987 0.98014 0.81960 0.99117 1.22548 0.92938 0.89790 0.92653 0.93922 1.23812 0.99527 0.97761 0.98786 1.22090 0.99369 0.86222 0.88261 1.46012 1.33074 1.31959 1.21575 1.18982 1.16238 1.01861 0.97886 0.90353 1.24795 0.99801 0.99097 0.96722 1.69837 1.30168 1.39852 1.16827 0.86159 0.78750 0.82257 0.78811 1.21535 1.21724 1.20736 1.17607 0.86545 0.82410 0.78341 1.90838 1.12558 1.86176 1.49588 1.22627 0.90810 0.96430 0.98986 1.24021 1.02282 0.86574 0.91608 1.68845 1.07320 1.28397 1.09526 1.19823 0.90872 0.94460 0.98293 1.20832 0.94052 0.96622 0.99227 1.21092 0.94032 0.98856 0.97230 1.21041 1.00853 0.91854 0.98643 1.20897 0.91059 0.99547 0.97851 1.19764 0.95784 0.89200 1.00842 1.69141 1.07496 1.27267 1.06511 0.92166 0.89908 0.91797 0.88464 0.91010 0.93956 0.89820 0.91559 0.95644 0.93695 0.79465 0.84128 0.84580 0.84511 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 9.15 59.85 0.55 1.59 16 2 N -0.58 -8.95 2.78 -182.55 -0.51 -9.45 16 3 C 0.11 2.05 5.49 -4.04 -0.02 2.02 16 4 C 0.13 2.70 4.59 -66.74 -0.31 2.39 16 5 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.16 -3.37 7.26 -25.80 -0.19 -3.56 16 7 C 0.17 4.15 7.38 -2.97 -0.02 4.13 16 8 N -0.60 -15.73 3.58 -169.75 -0.61 -16.33 16 9 C -0.22 -6.28 10.52 -15.06 -0.16 -6.44 16 10 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -28.05 11.53 55.49 0.64 -27.41 16 13 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 C 0.57 9.05 7.15 -12.15 -0.09 8.96 16 18 O -0.52 -9.74 14.58 5.37 0.08 -9.66 16 19 C 0.07 0.91 6.58 -82.73 -0.54 0.37 16 20 C 0.13 1.64 10.75 -16.92 -0.18 1.45 16 21 N -0.43 -5.24 10.45 -10.53 -0.11 -5.35 16 22 C 0.09 0.99 6.60 -84.70 -0.56 0.43 16 23 C -0.09 -0.69 9.98 -39.49 -0.39 -1.09 16 24 C -0.09 -0.51 9.95 -39.90 -0.40 -0.90 16 25 C -0.10 -0.57 9.95 -39.92 -0.40 -0.97 16 26 C -0.07 -0.57 9.99 -39.41 -0.39 -0.96 16 27 C 0.07 0.76 6.60 -84.79 -0.56 0.20 16 28 N -0.39 -4.68 6.26 -7.39 -0.05 -4.73 16 29 H 0.06 0.70 7.99 -51.93 -0.42 0.28 16 30 H 0.08 0.91 5.80 -51.93 -0.30 0.61 16 31 H 0.06 0.67 7.89 -51.93 -0.41 0.26 16 32 H 0.10 2.04 7.20 -51.93 -0.37 1.67 16 33 H 0.07 1.22 7.95 -51.93 -0.41 0.80 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.85 6.82 -51.93 -0.35 1.50 16 36 H 0.07 1.82 7.41 -51.93 -0.39 1.43 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.19 2.13 7.64 -52.49 -0.40 1.73 16 40 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 42 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 43 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -34.18 358.98 -9.48 -43.67 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.56 Total: -0.96 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -3.76 Total: 7.31 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.63 Total: -63.27 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.18 -9.48 -43.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085640196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.636 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds