Wall clock time and date at job start Tue Mar 31 2020 15:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00252 * 2 1 4 4 C 1.53002 * 109.46977 * 275.63337 * 3 2 1 5 5 H 1.08996 * 112.96737 * 67.62171 * 4 3 2 6 6 C 1.53944 * 113.76539 * 295.94058 * 4 3 2 7 7 C 1.53944 * 86.29332 * 222.09511 * 6 4 3 8 8 N 1.47588 * 86.23614 * 23.55223 * 7 6 4 9 9 C 1.36941 * 134.48850 * 155.42628 * 8 7 6 10 10 H 1.08000 * 119.99990 * 185.39714 * 9 8 7 11 11 C 1.38807 * 120.00026 * 5.39532 * 9 8 7 12 12 N 1.31616 * 120.00464 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99917 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47448 * 89.99708 * 13 11 9 15 15 H 1.48500 * 109.47186 * 210.00295 * 13 11 9 16 16 H 1.48505 * 109.47192 * 329.99680 * 13 11 9 17 17 C 1.34781 * 120.00025 * 179.97438 * 2 1 3 18 18 O 1.21498 * 119.99931 * 185.36080 * 17 2 1 19 19 C 1.48239 * 119.99869 * 5.35653 * 17 2 1 20 20 C 1.40571 * 119.74585 * 185.83477 * 19 17 2 21 21 N 1.31257 * 120.56962 * 179.74851 * 20 19 17 22 22 C 1.33786 * 119.80544 * 0.51974 * 21 20 19 23 23 C 1.40544 * 120.99807 * 179.71646 * 22 21 20 24 24 C 1.36073 * 119.75259 * 180.02562 * 23 22 21 25 25 C 1.39482 * 121.01792 * 359.97438 * 24 23 22 26 26 C 1.35990 * 120.97813 * 0.02562 * 25 24 23 27 27 C 1.40820 * 119.70362 * 0.02562 * 26 25 24 28 28 N 1.32163 * 119.74677 * 6.11071 * 19 17 2 29 29 H 1.09001 * 109.46619 * 95.78684 * 1 2 3 30 30 H 1.09003 * 109.47020 * 215.78194 * 1 2 3 31 31 H 1.08991 * 109.47188 * 335.78496 * 1 2 3 32 32 H 1.08996 * 109.47287 * 155.62531 * 3 2 1 33 33 H 1.09005 * 109.46899 * 35.62924 * 3 2 1 34 34 H 1.09004 * 113.74241 * 107.75062 * 6 4 3 35 35 H 1.09004 * 113.84328 * 336.45363 * 6 4 3 36 36 H 1.08996 * 113.77005 * 137.90988 * 7 6 4 37 37 H 1.09000 * 113.77322 * 269.20114 * 7 6 4 38 38 H 0.96998 * 120.00453 * 180.02562 * 12 11 9 39 39 H 1.08000 * 119.71724 * 359.97438 * 20 19 17 40 40 H 1.07997 * 120.12034 * 359.97438 * 23 22 21 41 41 H 1.08006 * 119.49398 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.50804 * 179.97438 * 25 24 23 43 43 H 1.08006 * 120.14831 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3299 1.7811 -1.4356 5 1 1.3760 2.0796 -1.8703 6 6 3.1675 0.8653 -2.3464 7 6 3.7991 2.1571 -2.8962 8 7 3.4055 2.7786 -1.6168 9 6 3.8567 3.8485 -0.8907 10 1 3.4412 4.0528 0.0849 11 6 4.8482 4.6703 -1.4088 12 7 5.3543 4.4216 -2.5980 13 14 5.4642 6.1292 -0.4181 14 1 6.6062 5.7045 0.4308 15 1 5.9071 7.2037 -1.3424 16 1 4.3687 6.6394 0.4451 17 6 2.1389 -1.1672 0.0005 18 8 3.3499 -1.1695 0.0988 19 6 1.4026 -2.4483 -0.1188 20 6 2.0953 -3.6651 0.0056 21 7 1.4586 -4.8087 -0.0923 22 6 0.1407 -4.8185 -0.3227 23 6 -0.5649 -6.0285 -0.4380 24 6 -1.9050 -6.0089 -0.6730 25 6 -2.5946 -4.8034 -0.8018 26 6 -1.9473 -3.6120 -0.6966 27 6 -0.5602 -3.5905 -0.4547 28 7 0.1008 -2.4376 -0.3466 29 1 -0.3632 -0.1036 -1.0225 30 1 -0.3633 -0.8337 0.6009 31 1 -0.3633 0.9372 0.4215 32 1 3.1898 1.1153 0.4241 33 1 1.6558 2.0010 0.5987 34 1 2.5768 0.3184 -3.0814 35 1 3.8689 0.2292 -1.8066 36 1 4.8776 2.0922 -3.0398 37 1 3.2787 2.5667 -3.7620 38 1 6.0474 4.9957 -2.9599 39 1 3.1599 -3.6590 0.1869 40 1 -0.0453 -6.9703 -0.3412 41 1 -2.4431 -6.9412 -0.7613 42 1 -3.6583 -4.8163 -0.9886 43 1 -2.4947 -2.6865 -0.7982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085640196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:34 Heat of formation + Delta-G solvation = 95.035357 kcal Electronic energy + Delta-G solvation = -27046.142461 eV Core-core repulsion = 23286.607440 eV Total energy + Delta-G solvation = -3759.535021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.68976 -41.00932 -39.47650 -38.27108 -36.84921 -35.81226 -34.21945 -32.18945 -31.62070 -29.96181 -29.83572 -27.81020 -26.57267 -25.65470 -25.27612 -24.07783 -23.25489 -21.50038 -20.78862 -19.49009 -19.44892 -18.69149 -18.11045 -17.45517 -17.12795 -16.80783 -16.71252 -16.09543 -15.90451 -15.77991 -15.39342 -15.22024 -15.01748 -14.68940 -14.19662 -14.06825 -13.90147 -13.64449 -13.35255 -12.96068 -12.91143 -12.89556 -12.86017 -12.69080 -12.62028 -12.52717 -12.28025 -12.11663 -11.83747 -11.63092 -11.44039 -11.25389 -10.85619 -10.16355 -10.09480 -9.68882 -9.60401 -8.89559 -7.88869 -5.22063 -1.09578 -0.67760 0.77159 1.32356 1.44964 1.48237 1.55892 1.72827 2.06549 2.48303 2.67547 2.93524 2.98884 3.10944 3.30535 3.39332 3.54148 3.72353 3.87000 3.96679 4.13423 4.18579 4.27669 4.30200 4.39263 4.40246 4.45196 4.68745 4.79236 4.82875 4.84986 4.90171 4.97320 5.01768 5.07287 5.15566 5.18112 5.22245 5.37044 5.46699 5.53208 5.68575 5.71848 5.93409 5.97727 6.23622 6.48469 6.92182 6.95686 7.62384 8.58723 9.29467 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.029522 B = 0.002602 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.210914 B =10759.703973 C =10973.653695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.583 5.583 3 C 0.127 3.873 4 C 0.136 3.864 5 H 0.062 0.938 6 C -0.136 4.136 7 C 0.161 3.839 8 N -0.628 5.628 9 C -0.227 4.227 10 H 0.089 0.911 11 C -0.073 4.073 12 N -0.958 5.958 13 Si 0.979 3.021 14 H -0.289 1.289 15 H -0.296 1.296 16 H -0.264 1.264 17 C 0.566 3.434 18 O -0.557 6.557 19 C 0.045 3.955 20 C 0.118 3.882 21 N -0.441 5.441 22 C 0.074 3.926 23 C -0.109 4.109 24 C -0.067 4.067 25 C -0.086 4.086 26 C -0.085 4.085 27 C 0.052 3.948 28 N -0.380 5.380 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.021 0.979 38 H 0.247 0.753 39 H 0.186 0.814 40 H 0.151 0.849 41 H 0.176 0.824 42 H 0.178 0.822 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.286 -22.882 5.056 32.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.314 5.314 3 C 0.003 3.997 4 C 0.030 3.970 5 H 0.079 0.921 6 C -0.174 4.174 7 C 0.036 3.964 8 N -0.354 5.354 9 C -0.355 4.355 10 H 0.107 0.893 11 C -0.265 4.265 12 N -0.608 5.608 13 Si 0.807 3.193 14 H -0.216 1.216 15 H -0.222 1.222 16 H -0.188 1.188 17 C 0.352 3.648 18 O -0.435 6.435 19 C -0.109 4.109 20 C -0.057 4.057 21 N -0.154 5.154 22 C -0.051 4.051 23 C -0.128 4.128 24 C -0.087 4.087 25 C -0.106 4.106 26 C -0.104 4.104 27 C -0.075 4.075 28 N -0.099 5.099 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.039 0.961 38 H 0.056 0.944 39 H 0.203 0.797 40 H 0.169 0.831 41 H 0.194 0.806 42 H 0.195 0.805 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -21.618 -22.656 5.170 31.739 hybrid contribution 1.202 1.301 0.070 1.772 sum -20.416 -21.355 5.240 30.005 Atomic orbital electron populations 1.22272 0.76182 1.03510 1.03298 1.47695 1.08979 1.04563 1.70141 1.21569 0.97314 0.83698 0.97159 1.22685 0.92252 0.87725 0.94364 0.92100 1.23527 0.99020 0.96089 0.98792 1.22005 0.97464 0.88623 0.88313 1.46342 1.34981 1.32306 1.21818 1.19434 1.15773 1.01855 0.98427 0.89298 1.25686 1.00607 1.02239 0.98004 1.70037 1.31004 1.41002 1.18719 0.85072 0.78341 0.78592 0.77305 1.21586 1.22235 1.18803 1.17969 0.86228 0.83316 0.77245 1.90807 1.14416 1.86913 1.51331 1.22103 0.91522 0.95097 1.02175 1.23940 1.02361 0.86697 0.92661 1.68838 1.08472 1.28052 1.10055 1.20329 0.90536 0.95972 0.98268 1.21102 0.95288 0.95892 1.00506 1.21629 0.92979 1.00695 0.93400 1.21572 1.02673 0.90750 0.95602 1.21209 0.89575 1.01487 0.98129 1.20220 0.97192 0.88604 1.01477 1.69026 1.06693 1.28288 1.05893 0.91568 0.88993 0.90100 0.91703 0.89223 0.91250 0.91283 0.95090 0.96145 0.94414 0.79734 0.83122 0.80626 0.80512 0.82247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.92 9.15 127.77 1.17 3.09 16 2 N -0.58 -17.62 2.78 -849.75 -2.36 -19.98 16 3 C 0.13 4.60 5.49 86.38 0.47 5.07 16 4 C 0.14 5.67 4.59 45.05 0.21 5.88 16 5 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 6 C -0.14 -5.80 7.26 31.25 0.23 -5.57 16 7 C 0.16 8.39 7.38 86.48 0.64 9.03 16 8 N -0.63 -33.55 3.58 -690.98 -2.48 -36.02 16 9 C -0.23 -12.99 10.52 84.03 0.88 -12.11 16 10 H 0.09 4.77 7.83 -2.91 -0.02 4.74 16 11 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 12 N -0.96 -60.59 11.53 21.65 0.25 -60.34 16 13 Si 0.98 47.18 29.55 68.60 2.03 49.20 16 14 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 15 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 16 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 17 C 0.57 18.60 7.15 86.90 0.62 19.22 16 18 O -0.56 -22.24 14.58 -3.71 -0.05 -22.29 16 19 C 0.05 1.25 6.58 42.32 0.28 1.53 16 20 C 0.12 3.11 10.75 85.35 0.92 4.03 16 21 N -0.44 -10.96 10.45 -187.22 -1.96 -12.92 16 22 C 0.07 1.54 6.60 40.34 0.27 1.81 16 23 C -0.11 -1.41 9.98 22.33 0.22 -1.19 16 24 C -0.07 -0.40 9.95 22.07 0.22 -0.18 16 25 C -0.09 -0.48 9.95 22.05 0.22 -0.26 16 26 C -0.08 -0.98 9.99 22.38 0.22 -0.76 16 27 C 0.05 1.04 6.60 40.48 0.27 1.30 16 28 N -0.38 -8.87 6.26 -177.28 -1.11 -9.98 16 29 H 0.07 1.37 7.99 -2.39 -0.02 1.36 16 30 H 0.09 1.86 5.80 -2.39 -0.01 1.84 16 31 H 0.08 1.48 7.89 -2.39 -0.02 1.46 16 32 H 0.06 2.81 7.20 -2.39 -0.02 2.79 16 33 H 0.09 2.92 7.95 -2.38 -0.02 2.90 16 34 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 35 H 0.07 3.18 6.82 -2.39 -0.02 3.16 16 36 H 0.03 1.80 7.41 -2.39 -0.02 1.78 16 37 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.19 4.69 7.64 -2.91 -0.02 4.66 16 40 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.18 -0.26 8.06 -2.91 -0.02 -0.28 16 42 H 0.18 -0.32 8.06 -2.91 -0.02 -0.34 16 43 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -78.50 358.98 2.65 -75.85 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.03 Total: 9.44 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 7.30 Total: 27.04 kcal Atomic # 7 Polarization: -131.59 SS G_CDS: -7.66 Total: -139.24 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.20 kcal Total: -78.50 2.65 -75.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085640196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.887 kcal (2) G-P(sol) polarization free energy of solvation -78.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds