Wall clock time and date at job start Tue Mar 31 2020 15:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 119.99989 * 2 1 4 4 C 1.52994 * 109.47301 * 264.34727 * 3 2 1 5 5 H 1.09005 * 112.97061 * 290.54347 * 4 3 2 6 6 C 1.53950 * 113.76954 * 62.22335 * 4 3 2 7 7 C 1.53943 * 86.29181 * 137.90712 * 6 4 3 8 8 N 1.47584 * 113.77025 * 158.86568 * 4 3 2 9 9 C 1.36935 * 134.49547 * 41.06573 * 8 4 3 10 10 H 1.07998 * 119.99917 * 337.90230 * 9 8 4 11 11 C 1.38812 * 120.00392 * 157.89504 * 9 8 4 12 12 N 1.31618 * 120.00064 * 170.50308 * 11 9 8 13 13 Si 1.86797 * 119.99742 * 350.50303 * 11 9 8 14 14 H 1.48498 * 109.47220 * 86.24016 * 13 11 9 15 15 H 1.48495 * 109.47160 * 206.23780 * 13 11 9 16 16 H 1.48501 * 109.47404 * 326.24067 * 13 11 9 17 17 C 1.34782 * 119.99802 * 180.02562 * 2 1 3 18 18 O 1.21548 * 119.99659 * 182.37837 * 17 2 1 19 19 C 1.47888 * 119.99984 * 2.37678 * 17 2 1 20 20 N 1.32138 * 120.03682 * 353.33305 * 19 17 2 21 21 C 1.31982 * 122.77369 * 179.97438 * 20 19 17 22 22 C 1.37778 * 121.72542 * 359.97438 * 21 20 19 23 23 C 1.40385 * 118.72889 * 0.02562 * 22 21 20 24 24 C 1.40637 * 122.27708 * 179.97438 * 23 22 21 25 25 C 1.36648 * 117.95569 * 180.02562 * 24 23 22 26 26 C 1.39392 * 119.91944 * 359.91846 * 25 24 23 27 27 N 1.31213 * 121.85978 * 0.12356 * 26 25 24 28 28 C 1.33261 * 121.21693 * 359.92189 * 27 26 25 29 29 H 1.08995 * 109.46909 * 263.84763 * 1 2 3 30 30 H 1.09001 * 109.46847 * 23.84941 * 1 2 3 31 31 H 1.08998 * 109.46957 * 143.84204 * 1 2 3 32 32 H 1.09003 * 109.47243 * 24.35427 * 3 2 1 33 33 H 1.09005 * 109.47420 * 144.34873 * 3 2 1 34 34 H 1.08993 * 113.74168 * 252.25728 * 6 4 3 35 35 H 1.09004 * 113.73924 * 23.45661 * 6 4 3 36 36 H 1.08997 * 113.77131 * 90.69616 * 7 6 4 37 37 H 1.09003 * 113.77338 * 221.98121 * 7 6 4 38 38 H 0.97003 * 119.99808 * 179.97438 * 12 11 9 39 39 H 1.08000 * 119.13492 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.63477 * 179.97438 * 22 21 20 41 41 H 1.08002 * 121.02506 * 0.04617 * 24 23 22 42 42 H 1.07996 * 120.04023 * 179.97438 * 25 24 23 43 43 H 1.07998 * 119.07220 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5756 1.6393 -1.4354 5 1 3.3346 0.9814 -1.8588 6 6 1.3638 1.8630 -2.3582 7 6 2.1351 3.0750 -2.9112 8 7 2.8609 3.0750 -1.6236 9 6 3.5286 4.0241 -0.8966 10 1 3.6739 3.8880 0.1649 11 6 4.0189 5.1612 -1.5239 12 7 4.4926 6.1569 -0.8052 13 14 4.0065 5.2782 -3.3882 14 1 2.6923 5.7992 -3.8427 15 1 5.0842 6.1974 -3.8337 16 1 4.2329 3.9309 -3.9703 17 6 2.1389 -1.1673 -0.0005 18 8 3.3536 -1.1677 0.0432 19 6 1.4004 -2.4474 -0.0542 20 7 0.0818 -2.4544 0.0312 21 6 -0.6310 -3.5643 -0.0112 22 6 -0.0390 -4.8008 -0.1492 23 6 1.3597 -4.8722 -0.2460 24 6 2.0412 -6.0941 -0.3882 25 6 3.4046 -6.0610 -0.4738 26 6 4.0751 -4.8400 -0.4211 27 7 3.4339 -3.7030 -0.2876 28 6 2.1049 -3.6659 -0.1976 29 1 -0.3633 -0.1101 1.0217 30 1 -0.3633 0.9399 -0.4155 31 1 -0.3633 -0.8297 -0.6063 32 1 1.5684 2.0515 0.4238 33 1 3.1024 1.1658 0.5990 34 1 1.2151 1.0672 -3.0879 35 1 0.4500 2.1279 -1.8261 36 1 2.7656 2.8405 -3.7689 37 1 1.5138 3.9567 -3.0687 38 1 4.8356 6.9513 -1.2436 39 1 -1.7066 -3.5017 0.0635 40 1 -0.6394 -5.6979 -0.1814 41 1 1.5036 -7.0299 -0.4287 42 1 3.9619 -6.9795 -0.5832 43 1 5.1528 -4.8297 -0.4904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085646561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:06 Heat of formation + Delta-G solvation = 129.842035 kcal Electronic energy + Delta-G solvation = -27318.761309 eV Core-core repulsion = 23560.735618 eV Total energy + Delta-G solvation = -3758.025690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62711 -39.57474 -38.34586 -37.83156 -35.07038 -34.03046 -32.16614 -31.83644 -30.92600 -28.68233 -28.24411 -26.57084 -25.29680 -24.44521 -23.91938 -22.97030 -22.35681 -20.06400 -19.29540 -18.70954 -17.83388 -17.36583 -16.74463 -16.29426 -15.88282 -15.74251 -15.21539 -14.93001 -14.87694 -14.71401 -14.21331 -13.89818 -13.55730 -13.45391 -13.07591 -12.95967 -12.77045 -12.69783 -12.66639 -12.25504 -12.02639 -11.76606 -11.48554 -11.15315 -10.95726 -10.63956 -10.16984 -10.07114 -9.96469 -9.85884 -9.82081 -9.66457 -9.32867 -9.18056 -8.78655 -8.76548 -8.19173 -6.95947 -5.83132 -3.20290 -0.36805 0.33813 1.35244 2.46507 3.03734 3.15968 3.40992 3.51019 3.52659 3.82023 3.86622 3.94505 4.07584 4.23929 4.36260 4.44612 4.62280 4.76237 4.83067 4.93271 5.01490 5.17373 5.24423 5.35397 5.40286 5.51029 5.54288 5.69680 5.76049 5.79888 5.90138 5.95052 6.05264 6.16018 6.22957 6.34901 6.37965 6.46526 6.54642 6.63056 6.80420 7.15997 7.30285 7.41746 7.58804 7.71463 8.41327 8.46774 8.79044 9.73335 10.42606 11.34150 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.003046 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.905202 B = 9190.062794 C = 9757.908792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.589 5.589 3 C 0.120 3.880 4 C 0.131 3.869 5 H 0.053 0.947 6 C -0.143 4.143 7 C 0.096 3.904 8 N -0.616 5.616 9 C -0.226 4.226 10 H 0.097 0.903 11 C 0.018 3.982 12 N -0.922 5.922 13 Si 0.886 3.114 14 H -0.286 1.286 15 H -0.300 1.300 16 H -0.268 1.268 17 C 0.555 3.445 18 O -0.492 6.492 19 C 0.151 3.849 20 N -0.436 5.436 21 C 0.068 3.932 22 C -0.127 4.127 23 C -0.084 4.084 24 C -0.066 4.066 25 C -0.155 4.155 26 C 0.131 3.869 27 N -0.418 5.418 28 C 0.106 3.894 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.262 0.738 39 H 0.166 0.834 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.204 -28.696 0.486 31.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.322 5.322 3 C -0.003 4.003 4 C 0.023 3.977 5 H 0.071 0.929 6 C -0.181 4.181 7 C -0.029 4.029 8 N -0.344 5.344 9 C -0.352 4.352 10 H 0.114 0.886 11 C -0.180 4.180 12 N -0.568 5.568 13 Si 0.716 3.284 14 H -0.213 1.213 15 H -0.228 1.228 16 H -0.194 1.194 17 C 0.339 3.661 18 O -0.364 6.364 19 C -0.002 4.002 20 N -0.149 5.149 21 C -0.077 4.077 22 C -0.148 4.148 23 C -0.091 4.091 24 C -0.092 4.092 25 C -0.176 4.176 26 C -0.043 4.043 27 N -0.125 5.125 28 C -0.019 4.019 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.183 0.817 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.498 -26.704 0.787 29.084 hybrid contribution 0.010 -1.477 -1.236 1.926 sum -11.488 -28.181 -0.449 30.436 Atomic orbital electron populations 1.22391 0.78698 1.03356 1.02334 1.47723 1.07677 1.05509 1.71244 1.21732 0.97283 0.82747 0.98529 1.22538 0.94091 0.87823 0.93219 0.92917 1.23571 0.97926 0.97776 0.98813 1.22850 0.92943 0.96532 0.90533 1.46515 1.63441 1.03709 1.20731 1.18742 1.28314 0.96396 0.91789 0.88584 1.25042 0.98245 0.97101 0.97614 1.69731 1.45735 1.06659 1.34629 0.86781 0.76862 0.77417 0.87299 1.21314 1.22779 1.19376 1.17623 0.86836 0.82381 0.79239 1.90889 1.12043 1.85860 1.47617 1.21692 0.89082 0.93194 0.96215 1.67992 1.06341 1.30307 1.10294 1.22749 1.00765 0.87330 0.96856 1.22352 0.93289 1.00030 0.99080 1.18977 0.94947 0.94434 1.00763 1.21410 0.94699 0.96909 0.96211 1.22145 0.95249 1.00258 0.99915 1.23372 1.01365 0.87145 0.92406 1.68346 1.07124 1.28599 1.08477 1.19479 0.90824 0.92397 0.99192 0.92978 0.91789 0.88107 0.89437 0.90196 0.92809 0.90217 0.93866 0.92701 0.92823 0.81653 0.83791 0.83783 0.83908 0.81685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 8.99 59.85 0.54 1.48 16 2 N -0.59 -9.60 2.73 -182.68 -0.50 -10.10 16 3 C 0.12 2.29 5.28 -4.05 -0.02 2.27 16 4 C 0.13 2.77 4.55 -66.86 -0.30 2.46 16 5 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 6 C -0.14 -2.59 7.27 -25.79 -0.19 -2.78 16 7 C 0.10 2.13 5.82 -2.85 -0.02 2.11 16 8 N -0.62 -15.53 3.30 -169.71 -0.56 -16.09 16 9 C -0.23 -6.62 10.96 -15.06 -0.17 -6.79 16 10 H 0.10 2.97 8.06 -52.49 -0.42 2.55 16 11 C 0.02 0.53 5.50 -17.43 -0.10 0.44 16 12 N -0.92 -29.48 13.97 55.49 0.78 -28.71 16 13 Si 0.89 23.49 25.26 -169.99 -4.29 19.20 16 14 H -0.29 -7.36 7.06 56.52 0.40 -6.96 16 15 H -0.30 -8.04 7.11 56.52 0.40 -7.63 16 16 H -0.27 -6.95 5.77 56.52 0.33 -6.63 16 17 C 0.56 9.75 7.61 -12.31 -0.09 9.66 16 18 O -0.49 -10.34 14.90 5.32 0.08 -10.26 16 19 C 0.15 2.19 6.69 -82.55 -0.55 1.63 16 20 N -0.44 -5.01 5.98 -9.55 -0.06 -5.07 16 21 C 0.07 0.55 11.12 -17.66 -0.20 0.35 16 22 C -0.13 -0.90 9.93 -38.94 -0.39 -1.29 16 23 C -0.08 -0.81 5.75 -106.80 -0.61 -1.43 16 24 C -0.07 -0.45 9.94 -39.25 -0.39 -0.84 16 25 C -0.15 -1.04 10.03 -39.73 -0.40 -1.44 16 26 C 0.13 1.30 11.14 -17.39 -0.19 1.11 16 27 N -0.42 -6.09 8.52 -10.75 -0.09 -6.18 16 28 C 0.11 1.45 6.61 -84.62 -0.56 0.89 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.77 6.53 -51.93 -0.34 0.43 16 31 H 0.10 1.18 5.23 -52.23 -0.27 0.91 16 32 H 0.09 1.65 8.03 -51.93 -0.42 1.23 16 33 H 0.08 1.69 7.56 -51.93 -0.39 1.30 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.32 6.72 -51.93 -0.35 0.97 16 36 H 0.04 0.98 6.38 -51.93 -0.33 0.65 16 37 H 0.05 1.22 7.37 -51.93 -0.38 0.83 16 38 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 39 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 41 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 43 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 350.69 15.07 5.28 5.28 Total: -1.00 -37.64 350.69 -8.50 -46.14 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -5.50 Total: -2.05 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -3.64 Total: 7.84 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -0.43 Total: -66.16 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -4.29 Total: 19.20 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.64 -8.50 -46.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.983 kcal (2) G-P(sol) polarization free energy of solvation -37.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds