Wall clock time and date at job start Tue Mar 31 2020 15:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46493 * 119.99989 * 2 1 4 4 C 1.52994 * 109.47301 * 264.34727 * 3 2 1 5 5 H 1.09005 * 112.97061 * 290.54347 * 4 3 2 6 6 C 1.53950 * 113.76954 * 62.22335 * 4 3 2 7 7 C 1.53943 * 86.29181 * 137.90712 * 6 4 3 8 8 N 1.47584 * 113.77025 * 158.86568 * 4 3 2 9 9 C 1.36935 * 134.49547 * 41.06573 * 8 4 3 10 10 H 1.07998 * 119.99917 * 337.90230 * 9 8 4 11 11 C 1.38812 * 120.00392 * 157.89504 * 9 8 4 12 12 N 1.31618 * 120.00064 * 170.50308 * 11 9 8 13 13 Si 1.86797 * 119.99742 * 350.50303 * 11 9 8 14 14 H 1.48498 * 109.47220 * 86.24016 * 13 11 9 15 15 H 1.48495 * 109.47160 * 206.23780 * 13 11 9 16 16 H 1.48501 * 109.47404 * 326.24067 * 13 11 9 17 17 C 1.34782 * 119.99802 * 180.02562 * 2 1 3 18 18 O 1.21548 * 119.99659 * 182.37837 * 17 2 1 19 19 C 1.47888 * 119.99984 * 2.37678 * 17 2 1 20 20 N 1.32138 * 120.03682 * 353.33305 * 19 17 2 21 21 C 1.31982 * 122.77369 * 179.97438 * 20 19 17 22 22 C 1.37778 * 121.72542 * 359.97438 * 21 20 19 23 23 C 1.40385 * 118.72889 * 0.02562 * 22 21 20 24 24 C 1.40637 * 122.27708 * 179.97438 * 23 22 21 25 25 C 1.36648 * 117.95569 * 180.02562 * 24 23 22 26 26 C 1.39392 * 119.91944 * 359.91846 * 25 24 23 27 27 N 1.31213 * 121.85978 * 0.12356 * 26 25 24 28 28 C 1.33261 * 121.21693 * 359.92189 * 27 26 25 29 29 H 1.08995 * 109.46909 * 263.84763 * 1 2 3 30 30 H 1.09001 * 109.46847 * 23.84941 * 1 2 3 31 31 H 1.08998 * 109.46957 * 143.84204 * 1 2 3 32 32 H 1.09003 * 109.47243 * 24.35427 * 3 2 1 33 33 H 1.09005 * 109.47420 * 144.34873 * 3 2 1 34 34 H 1.08993 * 113.74168 * 252.25728 * 6 4 3 35 35 H 1.09004 * 113.73924 * 23.45661 * 6 4 3 36 36 H 1.08997 * 113.77131 * 90.69616 * 7 6 4 37 37 H 1.09003 * 113.77338 * 221.98121 * 7 6 4 38 38 H 0.97003 * 119.99808 * 179.97438 * 12 11 9 39 39 H 1.08000 * 119.13492 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.63477 * 179.97438 * 22 21 20 41 41 H 1.08002 * 121.02506 * 0.04617 * 24 23 22 42 42 H 1.07996 * 120.04023 * 179.97438 * 25 24 23 43 43 H 1.07998 * 119.07220 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5756 1.6393 -1.4354 5 1 3.3346 0.9814 -1.8588 6 6 1.3638 1.8630 -2.3582 7 6 2.1351 3.0750 -2.9112 8 7 2.8609 3.0750 -1.6236 9 6 3.5286 4.0241 -0.8966 10 1 3.6739 3.8880 0.1649 11 6 4.0189 5.1612 -1.5239 12 7 4.4926 6.1569 -0.8052 13 14 4.0065 5.2782 -3.3882 14 1 2.6923 5.7992 -3.8427 15 1 5.0842 6.1974 -3.8337 16 1 4.2329 3.9309 -3.9703 17 6 2.1389 -1.1673 -0.0005 18 8 3.3536 -1.1677 0.0432 19 6 1.4004 -2.4474 -0.0542 20 7 0.0818 -2.4544 0.0312 21 6 -0.6310 -3.5643 -0.0112 22 6 -0.0390 -4.8008 -0.1492 23 6 1.3597 -4.8722 -0.2460 24 6 2.0412 -6.0941 -0.3882 25 6 3.4046 -6.0610 -0.4738 26 6 4.0751 -4.8400 -0.4211 27 7 3.4339 -3.7030 -0.2876 28 6 2.1049 -3.6659 -0.1976 29 1 -0.3633 -0.1101 1.0217 30 1 -0.3633 0.9399 -0.4155 31 1 -0.3633 -0.8297 -0.6063 32 1 1.5684 2.0515 0.4238 33 1 3.1024 1.1658 0.5990 34 1 1.2151 1.0672 -3.0879 35 1 0.4500 2.1279 -1.8261 36 1 2.7656 2.8405 -3.7689 37 1 1.5138 3.9567 -3.0687 38 1 4.8356 6.9513 -1.2436 39 1 -1.7066 -3.5017 0.0635 40 1 -0.6394 -5.6979 -0.1814 41 1 1.5036 -7.0299 -0.4287 42 1 3.9619 -6.9795 -0.5832 43 1 5.1528 -4.8297 -0.4904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085646561.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:05 Heat of formation + Delta-G solvation = 102.829275 kcal Electronic energy + Delta-G solvation = -27319.932670 eV Core-core repulsion = 23560.735618 eV Total energy + Delta-G solvation = -3759.197051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39102 -40.86444 -39.67331 -38.93201 -36.42589 -34.75416 -34.39394 -32.53080 -31.75368 -30.42474 -29.94082 -27.63559 -26.24609 -25.31743 -25.04223 -24.78535 -23.55950 -21.31458 -20.79456 -19.67319 -18.78721 -18.52333 -18.21343 -17.48544 -17.24530 -16.97818 -16.83344 -16.10999 -15.79460 -15.57926 -15.32183 -15.16495 -14.92077 -14.77445 -14.20213 -14.19389 -13.98624 -13.83647 -13.76621 -13.65689 -13.51179 -13.20662 -12.94082 -12.68151 -12.42955 -12.03291 -11.83664 -11.79856 -11.75476 -11.29761 -11.27639 -10.98123 -10.61802 -10.35097 -10.05712 -9.66356 -9.41982 -9.03788 -8.16407 -5.50855 -1.08892 -0.31697 0.66504 1.27709 1.34989 1.42656 1.67696 1.84481 2.16752 2.40478 2.89290 3.06717 3.10358 3.14063 3.22437 3.42361 3.66258 3.69236 3.75732 3.94445 4.03865 4.17665 4.26770 4.29131 4.37356 4.48965 4.51623 4.55696 4.60661 4.67080 4.68692 4.82211 4.88970 4.93196 4.96844 4.99144 5.12187 5.16458 5.27980 5.42273 5.50381 5.63115 5.68071 6.15902 6.37727 6.51811 6.60431 6.94694 7.19065 7.42584 8.26200 9.04959 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.003046 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.905202 B = 9190.062794 C = 9757.908792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.588 5.588 3 C 0.135 3.865 4 C 0.127 3.873 5 H 0.029 0.971 6 C -0.109 4.109 7 C 0.088 3.912 8 N -0.640 5.640 9 C -0.218 4.218 10 H 0.060 0.940 11 C -0.045 4.045 12 N -0.969 5.969 13 Si 0.950 3.050 14 H -0.267 1.267 15 H -0.305 1.305 16 H -0.261 1.261 17 C 0.549 3.451 18 O -0.547 6.547 19 C 0.101 3.899 20 N -0.433 5.433 21 C 0.053 3.947 22 C -0.088 4.088 23 C -0.104 4.104 24 C -0.049 4.049 25 C -0.155 4.155 26 C 0.125 3.875 27 N -0.491 5.491 28 C 0.082 3.918 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.262 0.738 39 H 0.208 0.792 40 H 0.197 0.803 41 H 0.194 0.806 42 H 0.184 0.816 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.104 -33.208 -1.281 36.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.321 5.321 3 C 0.011 3.989 4 C 0.020 3.980 5 H 0.047 0.953 6 C -0.147 4.147 7 C -0.036 4.036 8 N -0.368 5.368 9 C -0.346 4.346 10 H 0.078 0.922 11 C -0.238 4.238 12 N -0.618 5.618 13 Si 0.778 3.222 14 H -0.192 1.192 15 H -0.233 1.233 16 H -0.186 1.186 17 C 0.336 3.664 18 O -0.423 6.423 19 C -0.049 4.049 20 N -0.147 5.147 21 C -0.094 4.094 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.074 4.074 25 C -0.175 4.175 26 C -0.048 4.048 27 N -0.200 5.200 28 C -0.042 4.042 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.225 0.775 40 H 0.214 0.786 41 H 0.211 0.789 42 H 0.201 0.799 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.449 -31.247 -0.991 34.872 hybrid contribution 1.173 -0.363 -0.586 1.361 sum -14.276 -31.611 -1.577 34.721 Atomic orbital electron populations 1.22591 0.76055 1.04444 1.03378 1.47772 1.09044 1.04105 1.71141 1.21303 0.96336 0.84522 0.96755 1.22643 0.95121 0.85145 0.95077 0.95296 1.23383 0.96817 0.96575 0.97912 1.23050 0.93121 0.98462 0.89005 1.46741 1.63271 1.04891 1.21941 1.18640 1.27649 0.97290 0.91027 0.92183 1.25763 0.98787 0.96874 1.02395 1.69881 1.47862 1.07461 1.36551 0.85754 0.77458 0.77507 0.81462 1.19226 1.23281 1.18564 1.18267 0.86616 0.83762 0.77797 1.90832 1.14491 1.86888 1.50045 1.21042 0.90259 0.91771 1.01813 1.67786 1.05041 1.32557 1.09278 1.23486 1.02310 0.86803 0.96782 1.22970 0.92293 1.01568 0.94010 1.19369 0.96260 0.94087 1.01419 1.22003 0.94742 0.97429 0.93272 1.22499 0.95859 1.00130 0.99030 1.23834 1.02238 0.87778 0.90996 1.68249 1.08578 1.31266 1.11897 1.19668 0.91006 0.93626 0.99946 0.92092 0.90856 0.86629 0.89204 0.93899 0.89710 0.87800 0.93801 0.92205 0.92945 0.77540 0.78624 0.78918 0.79868 0.80750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.84 8.99 127.77 1.15 2.99 16 2 N -0.59 -19.97 2.73 -850.15 -2.32 -22.29 16 3 C 0.14 5.50 5.28 86.38 0.46 5.96 16 4 C 0.13 5.55 4.55 45.09 0.21 5.75 16 5 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 6 C -0.11 -3.76 7.27 31.25 0.23 -3.53 16 7 C 0.09 3.75 5.82 86.43 0.50 4.26 16 8 N -0.64 -33.00 3.30 -690.83 -2.28 -35.28 16 9 C -0.22 -13.40 10.96 84.03 0.92 -12.48 16 10 H 0.06 4.02 8.06 -2.91 -0.02 3.99 16 11 C -0.04 -2.81 5.50 84.86 0.47 -2.35 16 12 N -0.97 -64.55 13.97 21.65 0.30 -64.24 16 13 Si 0.95 49.36 25.26 68.60 1.73 51.09 16 14 H -0.27 -12.91 7.06 99.48 0.70 -12.20 16 15 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 16 H -0.26 -13.05 5.77 99.48 0.57 -12.48 16 17 C 0.55 20.68 7.61 86.80 0.66 21.34 16 18 O -0.55 -25.46 14.90 -3.87 -0.06 -25.52 16 19 C 0.10 3.00 6.69 42.45 0.28 3.28 16 20 N -0.43 -9.23 5.98 -184.14 -1.10 -10.33 16 21 C 0.05 0.63 11.12 84.56 0.94 1.57 16 22 C -0.09 -0.79 9.93 22.68 0.23 -0.56 16 23 C -0.10 -1.69 5.75 -21.27 -0.12 -1.81 16 24 C -0.05 -0.44 9.94 22.48 0.22 -0.22 16 25 C -0.15 -1.61 10.03 22.18 0.22 -1.39 16 26 C 0.12 2.50 11.14 85.06 0.95 3.45 16 27 N -0.49 -15.21 8.52 -187.91 -1.60 -16.81 16 28 C 0.08 2.25 6.61 40.62 0.27 2.52 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.60 6.53 -2.39 -0.02 1.58 16 31 H 0.12 2.49 5.23 -2.97 -0.02 2.47 16 32 H 0.09 3.55 8.03 -2.39 -0.02 3.53 16 33 H 0.04 2.02 7.56 -2.38 -0.02 2.01 16 34 H 0.08 2.47 8.14 -2.39 -0.02 2.46 16 35 H 0.10 3.12 6.72 -2.39 -0.02 3.10 16 36 H 0.04 1.90 6.38 -2.39 -0.02 1.89 16 37 H 0.06 2.52 7.37 -2.39 -0.02 2.50 16 38 H 0.26 16.50 8.31 -92.71 -0.77 15.73 16 39 H 0.21 0.62 8.06 -2.91 -0.02 0.59 16 40 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 41 H 0.19 -0.18 8.06 -2.91 -0.02 -0.20 16 42 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 43 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -92.57 350.69 3.15 -89.42 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 0.90 Total: 5.19 kcal Atomic # 6 Polarization: 21.19 SS G_CDS: 7.58 Total: 28.77 kcal Atomic # 7 Polarization: -141.96 SS G_CDS: -7.00 Total: -148.96 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.06 Total: -25.52 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 1.73 Total: 51.09 kcal Total: -92.57 3.15 -89.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646561.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.251 kcal (2) G-P(sol) polarization free energy of solvation -92.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds