Wall clock time and date at job start Tue Mar 31 2020 15:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46505 * 119.99984 * 2 1 4 4 C 1.52995 * 109.47185 * 263.19278 * 3 2 1 5 5 H 1.09005 * 112.96409 * 311.53844 * 4 3 2 6 6 C 1.53940 * 113.77260 * 179.85677 * 4 3 2 7 7 C 1.53941 * 86.29153 * 222.09407 * 6 4 3 8 8 N 1.47580 * 86.12079 * 23.60525 * 7 6 4 9 9 C 1.36933 * 134.49482 * 155.35738 * 8 7 6 10 10 H 1.08003 * 119.99828 * 182.84624 * 9 8 7 11 11 C 1.38813 * 120.00146 * 2.84736 * 9 8 7 12 12 N 1.31615 * 119.99940 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99775 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46930 * 90.00242 * 13 11 9 15 15 H 1.48507 * 109.46560 * 209.99700 * 13 11 9 16 16 H 1.48498 * 109.47369 * 329.99571 * 13 11 9 17 17 C 1.34777 * 119.99917 * 179.97438 * 2 1 3 18 18 O 1.21541 * 120.00086 * 185.06974 * 17 2 1 19 19 C 1.47890 * 119.99902 * 5.06599 * 17 2 1 20 20 N 1.32138 * 120.03844 * 354.60119 * 19 17 2 21 21 C 1.31978 * 122.77551 * 179.97438 * 20 19 17 22 22 C 1.37781 * 121.72700 * 0.02562 * 21 20 19 23 23 C 1.40387 * 118.72775 * 359.97438 * 22 21 20 24 24 C 1.40642 * 122.28012 * 179.97438 * 23 22 21 25 25 C 1.36645 * 117.95035 * 180.02562 * 24 23 22 26 26 C 1.39390 * 119.92589 * 359.97438 * 25 24 23 27 27 N 1.31200 * 121.85928 * 0.02562 * 26 25 24 28 28 C 1.33265 * 121.22005 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.47459 * 238.45621 * 1 2 3 30 30 H 1.09007 * 109.47129 * 358.45695 * 1 2 3 31 31 H 1.08997 * 109.47397 * 118.45735 * 1 2 3 32 32 H 1.08998 * 109.47258 * 23.19517 * 3 2 1 33 33 H 1.09001 * 109.46657 * 143.19478 * 3 2 1 34 34 H 1.09003 * 113.73758 * 336.43864 * 6 4 3 35 35 H 1.08997 * 113.74215 * 107.63545 * 6 4 3 36 36 H 1.08999 * 113.77245 * 137.90610 * 7 6 4 37 37 H 1.08999 * 113.77168 * 269.19180 * 7 6 4 38 38 H 0.97000 * 120.00378 * 180.02562 * 12 11 9 39 39 H 1.07994 * 119.13833 * 180.02562 * 21 20 19 40 40 H 1.07994 * 120.63679 * 179.97438 * 22 21 20 41 41 H 1.07996 * 121.02258 * 0.04644 * 24 23 22 42 42 H 1.08004 * 120.03367 * 180.02562 * 25 24 23 43 43 H 1.08008 * 119.07013 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.6006 1.6250 -1.4323 5 1 3.0677 0.7944 -1.9617 6 6 3.3769 2.9493 -1.5473 7 6 2.5150 3.2308 -2.7914 8 7 1.5353 2.2989 -2.1999 9 6 0.1816 2.1282 -2.3163 10 1 -0.3209 1.3778 -1.7240 11 6 -0.5446 2.9196 -3.1957 12 7 0.0678 3.8343 -3.9171 13 14 -2.3911 2.6861 -3.3550 14 1 -3.0870 3.5645 -2.3805 15 1 -2.8176 3.0399 -4.7328 16 1 -2.7366 1.2686 -3.0785 17 6 2.1389 -1.1672 0.0005 18 8 3.3507 -1.1693 0.0935 19 6 1.4037 -2.4455 -0.1120 20 7 0.0823 -2.4514 -0.1057 21 6 -0.6277 -3.5596 -0.2033 22 6 -0.0296 -4.7955 -0.3190 23 6 1.3724 -4.8680 -0.3329 24 6 2.0602 -6.0894 -0.4472 25 6 3.4263 -6.0572 -0.4509 26 6 4.0934 -4.8380 -0.3440 27 7 3.4465 -3.7016 -0.2377 28 6 2.1144 -3.6635 -0.2267 29 1 -0.3634 -0.5376 0.8758 30 1 -0.3634 1.0274 0.0277 31 1 -0.3634 -0.4897 -0.9035 32 1 1.5612 2.0557 0.4047 33 1 3.0918 1.1719 0.6157 34 1 3.1947 3.6378 -0.7222 35 1 4.4368 2.8191 -1.7659 36 1 2.1595 4.2591 -2.8561 37 1 2.9568 2.8742 -3.7218 38 1 -0.4397 4.3876 -4.5313 39 1 -1.7057 -3.4962 -0.1923 40 1 -0.6278 -5.6912 -0.3974 41 1 1.5252 -7.0239 -0.5298 42 1 3.9884 -6.9754 -0.5374 43 1 5.1735 -4.8286 -0.3488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085646562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:11 Heat of formation + Delta-G solvation = 123.355934 kcal Electronic energy + Delta-G solvation = -27769.539631 eV Core-core repulsion = 24011.232683 eV Total energy + Delta-G solvation = -3758.306949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.44813 -39.36201 -38.11311 -37.52272 -34.82729 -33.87479 -32.14384 -31.67103 -30.74204 -28.42613 -27.64412 -26.31447 -25.10715 -24.27432 -23.58905 -23.21137 -21.98628 -19.79683 -19.01222 -18.59431 -17.67808 -17.21944 -16.69963 -16.18843 -15.69944 -15.41588 -14.91515 -14.80002 -14.52955 -14.45215 -14.06863 -13.77280 -13.48134 -13.35029 -13.01093 -12.76999 -12.69031 -12.45605 -12.32835 -11.84948 -11.33829 -11.25734 -11.01260 -10.95631 -10.86814 -10.64676 -10.41930 -10.02241 -9.91127 -9.72655 -9.58064 -9.54580 -9.19832 -9.00932 -8.69267 -8.62443 -7.98177 -6.74439 -5.66493 -2.96392 -0.20321 0.49751 1.49736 2.64330 3.22538 3.34765 3.42282 3.46544 3.49152 4.00209 4.03946 4.12192 4.24314 4.38642 4.51626 4.52665 4.56767 4.91827 5.08062 5.16002 5.26457 5.32088 5.40622 5.53850 5.64381 5.75998 5.83569 5.89741 5.98401 6.02630 6.10510 6.22536 6.23545 6.34159 6.38329 6.58602 6.61807 6.76262 6.84567 7.13100 7.38869 7.52723 7.55743 7.70154 7.74921 7.89807 8.09993 8.59818 9.15633 9.82564 10.75142 11.51438 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.003983 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.635517 B = 7028.821445 C = 8215.336222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.582 5.582 3 C 0.119 3.881 4 C 0.128 3.872 5 H 0.046 0.954 6 C -0.159 4.159 7 C 0.162 3.838 8 N -0.602 5.602 9 C -0.221 4.221 10 H 0.090 0.910 11 C -0.012 4.012 12 N -0.922 5.922 13 Si 0.902 3.098 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.281 1.281 17 C 0.557 3.443 18 O -0.505 6.505 19 C 0.150 3.850 20 N -0.433 5.433 21 C 0.074 3.926 22 C -0.130 4.130 23 C -0.084 4.084 24 C -0.066 4.066 25 C -0.157 4.157 26 C 0.127 3.873 27 N -0.417 5.417 28 C 0.106 3.894 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.023 0.977 38 H 0.251 0.749 39 H 0.166 0.834 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 -19.743 9.524 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.313 5.313 3 C -0.004 4.004 4 C 0.020 3.980 5 H 0.063 0.937 6 C -0.198 4.198 7 C 0.037 3.963 8 N -0.328 5.328 9 C -0.349 4.349 10 H 0.108 0.892 11 C -0.208 4.208 12 N -0.570 5.570 13 Si 0.733 3.267 14 H -0.216 1.216 15 H -0.219 1.219 16 H -0.207 1.207 17 C 0.342 3.658 18 O -0.379 6.379 19 C -0.003 4.003 20 N -0.146 5.146 21 C -0.072 4.072 22 C -0.151 4.151 23 C -0.091 4.091 24 C -0.092 4.092 25 C -0.178 4.178 26 C -0.047 4.047 27 N -0.125 5.125 28 C -0.019 4.019 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.061 0.939 39 H 0.183 0.817 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.896 -18.016 9.592 20.615 hybrid contribution -1.327 -1.972 -0.684 2.474 sum 1.570 -19.989 8.908 21.940 Atomic orbital electron populations 1.22098 0.78215 1.02265 1.01895 1.47694 1.08015 1.05357 1.70251 1.22000 0.96485 0.83441 0.98471 1.22604 0.89576 0.94382 0.91409 0.93689 1.23773 0.97377 0.97553 1.01068 1.22115 0.86301 0.96354 0.91574 1.46185 1.01208 1.35116 1.50313 1.19370 0.80786 1.15902 1.18794 0.89243 1.24779 0.97649 0.99333 0.98996 1.69831 1.34028 1.24195 1.28922 0.86268 0.85788 0.77602 0.77084 1.21619 1.21863 1.20693 1.17564 0.86683 0.82437 0.79103 1.90819 1.12244 1.86092 1.48761 1.21670 0.89104 0.93171 0.96320 1.68025 1.06568 1.30793 1.09254 1.22736 1.00800 0.87233 0.96410 1.22347 0.93234 1.00001 0.99522 1.18967 0.94938 0.94426 1.00802 1.21393 0.94643 0.96875 0.96280 1.22106 0.95233 1.00192 1.00295 1.23319 1.01238 0.87226 0.92909 1.68315 1.07070 1.28418 1.08668 1.19479 0.90717 0.92456 0.99242 0.92381 0.90379 0.91253 0.89623 0.90626 0.90737 0.92991 0.91269 0.95872 0.93906 0.81711 0.83844 0.83879 0.84051 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 7.29 59.85 0.44 2.16 16 2 N -0.58 -11.13 2.89 -182.68 -0.53 -11.66 16 3 C 0.12 2.30 5.25 -4.04 -0.02 2.28 16 4 C 0.13 2.82 4.49 -66.87 -0.30 2.52 16 5 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 6 C -0.16 -3.18 7.86 -25.81 -0.20 -3.39 16 7 C 0.16 3.97 7.44 -2.98 -0.02 3.95 16 8 N -0.60 -15.54 3.57 -170.74 -0.61 -16.15 16 9 C -0.22 -6.05 10.35 -15.06 -0.16 -6.20 16 10 H 0.09 2.29 3.94 -52.48 -0.21 2.08 16 11 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 12 N -0.92 -27.71 11.45 55.49 0.64 -27.08 16 13 Si 0.90 22.09 29.55 -169.99 -5.02 17.06 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 17 C 0.56 10.94 7.59 -12.31 -0.09 10.85 16 18 O -0.51 -10.89 14.89 5.33 0.08 -10.81 16 19 C 0.15 2.59 6.74 -82.55 -0.56 2.03 16 20 N -0.43 -6.54 5.95 -9.55 -0.06 -6.60 16 21 C 0.07 0.83 11.12 -17.66 -0.20 0.64 16 22 C -0.13 -1.26 9.93 -38.94 -0.39 -1.65 16 23 C -0.08 -0.99 5.75 -106.79 -0.61 -1.60 16 24 C -0.07 -0.56 9.94 -39.25 -0.39 -0.95 16 25 C -0.16 -1.26 10.03 -39.73 -0.40 -1.66 16 26 C 0.13 1.39 11.14 -17.39 -0.19 1.20 16 27 N -0.42 -6.62 8.51 -10.75 -0.09 -6.71 16 28 C 0.11 1.66 6.61 -84.62 -0.56 1.10 16 29 H 0.06 0.89 7.14 -51.93 -0.37 0.52 16 30 H 0.08 1.43 6.40 -51.93 -0.33 1.10 16 31 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 32 H 0.09 1.63 7.77 -51.93 -0.40 1.22 16 33 H 0.08 1.38 7.57 -51.93 -0.39 0.99 16 34 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.83 7.29 -51.93 -0.38 1.45 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 43 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -35.79 353.04 -9.39 -45.19 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -5.37 Total: 0.58 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: -3.75 Total: 10.86 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -0.65 Total: -68.19 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.79 -9.39 -45.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.542 kcal (2) G-P(sol) polarization free energy of solvation -35.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds