Wall clock time and date at job start Tue Mar 31 2020 15:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46505 * 119.99984 * 2 1 4 4 C 1.52995 * 109.47185 * 263.19278 * 3 2 1 5 5 H 1.09005 * 112.96409 * 311.53844 * 4 3 2 6 6 C 1.53940 * 113.77260 * 179.85677 * 4 3 2 7 7 C 1.53941 * 86.29153 * 222.09407 * 6 4 3 8 8 N 1.47580 * 86.12079 * 23.60525 * 7 6 4 9 9 C 1.36933 * 134.49482 * 155.35738 * 8 7 6 10 10 H 1.08003 * 119.99828 * 182.84624 * 9 8 7 11 11 C 1.38813 * 120.00146 * 2.84736 * 9 8 7 12 12 N 1.31615 * 119.99940 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99775 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46930 * 90.00242 * 13 11 9 15 15 H 1.48507 * 109.46560 * 209.99700 * 13 11 9 16 16 H 1.48498 * 109.47369 * 329.99571 * 13 11 9 17 17 C 1.34777 * 119.99917 * 179.97438 * 2 1 3 18 18 O 1.21541 * 120.00086 * 185.06974 * 17 2 1 19 19 C 1.47890 * 119.99902 * 5.06599 * 17 2 1 20 20 N 1.32138 * 120.03844 * 354.60119 * 19 17 2 21 21 C 1.31978 * 122.77551 * 179.97438 * 20 19 17 22 22 C 1.37781 * 121.72700 * 0.02562 * 21 20 19 23 23 C 1.40387 * 118.72775 * 359.97438 * 22 21 20 24 24 C 1.40642 * 122.28012 * 179.97438 * 23 22 21 25 25 C 1.36645 * 117.95035 * 180.02562 * 24 23 22 26 26 C 1.39390 * 119.92589 * 359.97438 * 25 24 23 27 27 N 1.31200 * 121.85928 * 0.02562 * 26 25 24 28 28 C 1.33265 * 121.22005 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.47459 * 238.45621 * 1 2 3 30 30 H 1.09007 * 109.47129 * 358.45695 * 1 2 3 31 31 H 1.08997 * 109.47397 * 118.45735 * 1 2 3 32 32 H 1.08998 * 109.47258 * 23.19517 * 3 2 1 33 33 H 1.09001 * 109.46657 * 143.19478 * 3 2 1 34 34 H 1.09003 * 113.73758 * 336.43864 * 6 4 3 35 35 H 1.08997 * 113.74215 * 107.63545 * 6 4 3 36 36 H 1.08999 * 113.77245 * 137.90610 * 7 6 4 37 37 H 1.08999 * 113.77168 * 269.19180 * 7 6 4 38 38 H 0.97000 * 120.00378 * 180.02562 * 12 11 9 39 39 H 1.07994 * 119.13833 * 180.02562 * 21 20 19 40 40 H 1.07994 * 120.63679 * 179.97438 * 22 21 20 41 41 H 1.07996 * 121.02258 * 0.04644 * 24 23 22 42 42 H 1.08004 * 120.03367 * 180.02562 * 25 24 23 43 43 H 1.08008 * 119.07013 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.6006 1.6250 -1.4323 5 1 3.0677 0.7944 -1.9617 6 6 3.3769 2.9493 -1.5473 7 6 2.5150 3.2308 -2.7914 8 7 1.5353 2.2989 -2.1999 9 6 0.1816 2.1282 -2.3163 10 1 -0.3209 1.3778 -1.7240 11 6 -0.5446 2.9196 -3.1957 12 7 0.0678 3.8343 -3.9171 13 14 -2.3911 2.6861 -3.3550 14 1 -3.0870 3.5645 -2.3805 15 1 -2.8176 3.0399 -4.7328 16 1 -2.7366 1.2686 -3.0785 17 6 2.1389 -1.1672 0.0005 18 8 3.3507 -1.1693 0.0935 19 6 1.4037 -2.4455 -0.1120 20 7 0.0823 -2.4514 -0.1057 21 6 -0.6277 -3.5596 -0.2033 22 6 -0.0296 -4.7955 -0.3190 23 6 1.3724 -4.8680 -0.3329 24 6 2.0602 -6.0894 -0.4472 25 6 3.4263 -6.0572 -0.4509 26 6 4.0934 -4.8380 -0.3440 27 7 3.4465 -3.7016 -0.2377 28 6 2.1144 -3.6635 -0.2267 29 1 -0.3634 -0.5376 0.8758 30 1 -0.3634 1.0274 0.0277 31 1 -0.3634 -0.4897 -0.9035 32 1 1.5612 2.0557 0.4047 33 1 3.0918 1.1719 0.6157 34 1 3.1947 3.6378 -0.7222 35 1 4.4368 2.8191 -1.7659 36 1 2.1595 4.2591 -2.8561 37 1 2.9568 2.8742 -3.7218 38 1 -0.4397 4.3876 -4.5313 39 1 -1.7057 -3.4962 -0.1923 40 1 -0.6278 -5.6912 -0.3974 41 1 1.5252 -7.0239 -0.5298 42 1 3.9884 -6.9754 -0.5374 43 1 5.1735 -4.8286 -0.3488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085646562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:10 Heat of formation + Delta-G solvation = 99.469385 kcal Electronic energy + Delta-G solvation = -27770.575430 eV Core-core repulsion = 24011.232683 eV Total energy + Delta-G solvation = -3759.342747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37144 -40.75667 -39.44978 -38.90449 -36.32486 -34.74652 -34.22752 -32.50690 -31.70987 -30.15797 -29.49007 -27.65769 -26.19895 -25.23855 -25.12480 -24.79856 -23.37186 -21.04805 -20.79692 -19.62526 -18.74300 -18.57590 -18.17341 -17.35497 -17.04115 -16.80854 -16.69549 -15.92994 -15.70989 -15.64578 -15.37162 -15.14583 -14.82697 -14.70681 -14.18508 -13.99382 -13.85032 -13.66574 -13.61340 -13.28564 -13.05612 -12.89788 -12.87309 -12.69034 -12.49570 -12.21711 -11.83089 -11.75793 -11.47789 -11.25896 -11.17735 -10.79690 -10.70309 -10.36249 -10.08872 -9.62182 -9.40660 -8.84198 -7.82161 -5.14114 -1.08711 -0.31939 0.66034 1.45953 1.48383 1.56123 1.65748 1.95855 2.19385 2.51395 3.01127 3.06950 3.21855 3.34316 3.41454 3.45365 3.65092 3.73292 3.94542 3.96688 4.12421 4.26022 4.29810 4.33755 4.46317 4.48068 4.56883 4.62939 4.65775 4.69200 4.81055 4.91528 4.95439 4.99673 5.04057 5.10418 5.11126 5.33893 5.37672 5.57670 5.63353 5.64832 5.74101 5.99522 6.39158 6.61858 6.93535 7.00048 7.19123 7.70177 8.66556 9.36203 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.003983 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.635517 B = 7028.821445 C = 8215.336222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.592 5.592 3 C 0.128 3.872 4 C 0.130 3.870 5 H 0.020 0.980 6 C -0.130 4.130 7 C 0.155 3.845 8 N -0.623 5.623 9 C -0.223 4.223 10 H 0.104 0.896 11 C -0.075 4.075 12 N -0.960 5.960 13 Si 0.967 3.033 14 H -0.282 1.282 15 H -0.302 1.302 16 H -0.265 1.265 17 C 0.552 3.448 18 O -0.539 6.539 19 C 0.095 3.905 20 N -0.445 5.445 21 C 0.048 3.952 22 C -0.091 4.091 23 C -0.106 4.106 24 C -0.051 4.051 25 C -0.153 4.153 26 C 0.127 3.873 27 N -0.486 5.486 28 C 0.084 3.916 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.005 0.995 38 H 0.243 0.757 39 H 0.198 0.802 40 H 0.196 0.804 41 H 0.192 0.808 42 H 0.187 0.813 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.519 -23.959 10.680 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.323 5.323 3 C 0.005 3.995 4 C 0.022 3.978 5 H 0.038 0.962 6 C -0.168 4.168 7 C 0.029 3.971 8 N -0.349 5.349 9 C -0.351 4.351 10 H 0.121 0.879 11 C -0.267 4.267 12 N -0.610 5.610 13 Si 0.796 3.204 14 H -0.209 1.209 15 H -0.229 1.229 16 H -0.190 1.190 17 C 0.339 3.661 18 O -0.415 6.415 19 C -0.056 4.056 20 N -0.158 5.158 21 C -0.099 4.099 22 C -0.111 4.111 23 C -0.113 4.113 24 C -0.076 4.076 25 C -0.173 4.173 26 C -0.047 4.047 27 N -0.195 5.195 28 C -0.040 4.040 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.023 0.977 38 H 0.052 0.948 39 H 0.215 0.785 40 H 0.213 0.787 41 H 0.209 0.791 42 H 0.204 0.796 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.674 -22.250 10.781 24.782 hybrid contribution -0.866 -0.932 -1.050 1.650 sum 0.808 -23.182 9.731 25.155 Atomic orbital electron populations 1.21978 0.77476 1.01509 1.02132 1.47797 1.08513 1.05279 1.70669 1.21799 0.97142 0.84080 0.96487 1.22631 0.88614 0.94319 0.92196 0.96245 1.23570 0.98071 0.96191 0.98996 1.22060 0.87350 0.94782 0.92873 1.46564 1.01507 1.35944 1.50868 1.19890 0.81905 1.15270 1.18011 0.87883 1.25621 1.02101 0.99631 0.99360 1.70040 1.35407 1.25510 1.30047 0.85231 0.80567 0.78311 0.76329 1.20862 1.22916 1.18955 1.18096 0.86658 0.83460 0.77883 1.90757 1.13651 1.86862 1.50238 1.21236 0.90094 0.92557 1.01672 1.67817 1.05936 1.33190 1.08834 1.23354 1.02085 0.87097 0.97320 1.22939 0.92645 1.01139 0.94359 1.19373 0.96015 0.94434 1.01500 1.21983 0.94930 0.97118 0.93583 1.22529 0.95618 1.00407 0.98783 1.23915 1.02433 0.87578 0.90733 1.68232 1.07936 1.31190 1.12133 1.19614 0.91191 0.93323 0.99846 0.90311 0.91402 0.92723 0.89205 0.89622 0.88797 0.90253 0.93672 0.97669 0.94766 0.78512 0.78670 0.79065 0.79555 0.80011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.99 7.29 127.77 0.93 4.92 16 2 N -0.59 -23.45 2.89 -850.15 -2.46 -25.90 16 3 C 0.13 5.07 5.25 86.38 0.45 5.52 16 4 C 0.13 5.86 4.49 45.09 0.20 6.06 16 5 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 6 C -0.13 -5.22 7.86 31.25 0.25 -4.97 16 7 C 0.15 7.91 7.44 86.48 0.64 8.56 16 8 N -0.62 -33.19 3.57 -694.09 -2.48 -35.67 16 9 C -0.22 -12.47 10.35 84.03 0.87 -11.60 16 10 H 0.10 5.35 3.94 -2.91 -0.01 5.34 16 11 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 12 N -0.96 -59.84 11.45 21.65 0.25 -59.59 16 13 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 16 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 17 C 0.55 22.84 7.59 86.80 0.66 23.50 16 18 O -0.54 -24.68 14.89 -3.85 -0.06 -24.74 16 19 C 0.10 3.38 6.74 42.45 0.29 3.67 16 20 N -0.44 -13.32 5.95 -184.14 -1.10 -14.42 16 21 C 0.05 0.97 11.12 84.56 0.94 1.91 16 22 C -0.09 -1.37 9.93 22.68 0.23 -1.14 16 23 C -0.11 -2.19 5.75 -21.27 -0.12 -2.31 16 24 C -0.05 -0.61 9.94 22.48 0.22 -0.38 16 25 C -0.15 -1.83 10.03 22.17 0.22 -1.61 16 26 C 0.13 2.63 11.14 85.06 0.95 3.58 16 27 N -0.49 -15.80 8.51 -187.91 -1.60 -17.40 16 28 C 0.08 2.65 6.61 40.63 0.27 2.92 16 29 H 0.08 2.44 7.14 -2.39 -0.02 2.43 16 30 H 0.07 2.51 6.40 -2.38 -0.02 2.50 16 31 H 0.05 2.11 6.62 -2.39 -0.02 2.09 16 32 H 0.09 3.44 7.77 -2.39 -0.02 3.43 16 33 H 0.09 3.20 7.57 -2.39 -0.02 3.18 16 34 H 0.09 3.44 8.10 -2.39 -0.02 3.42 16 35 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.04 2.50 7.29 -2.39 -0.02 2.49 16 37 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.20 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.19 0.43 8.06 -2.91 -0.02 0.40 16 42 H 0.19 0.52 8.06 -2.91 -0.02 0.49 16 43 H 0.18 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -85.60 353.04 3.09 -82.50 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.04 Total: 12.28 kcal Atomic # 6 Polarization: 27.25 SS G_CDS: 7.46 Total: 34.71 kcal Atomic # 7 Polarization: -145.60 SS G_CDS: -7.38 Total: -152.98 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.06 Total: -24.74 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -85.60 3.09 -82.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.974 kcal (2) G-P(sol) polarization free energy of solvation -85.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds