Wall clock time and date at job start Tue Mar 31 2020 15:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.52994 * 109.46950 * 239.99641 * 2 1 3 5 5 C 1.50699 * 109.47407 * 60.00353 * 4 2 1 6 6 H 1.08008 * 119.99578 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00403 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99869 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00152 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46928 * 90.00166 * 9 7 5 11 11 H 1.48498 * 109.47461 * 209.99969 * 9 7 5 12 12 H 1.48497 * 109.47265 * 330.00283 * 9 7 5 13 13 C 1.52998 * 109.46698 * 119.99923 * 2 1 3 14 14 N 1.46502 * 109.47521 * 299.99593 * 13 2 1 15 15 C 1.34771 * 120.00228 * 180.02562 * 14 13 2 16 16 O 1.21583 * 120.00195 * 359.97438 * 15 14 13 17 17 N 1.34782 * 120.00056 * 180.02562 * 15 14 13 18 18 C 1.39945 * 119.99970 * 185.31431 * 17 15 14 19 19 C 1.38885 * 120.07048 * 33.27031 * 18 17 15 20 20 C 1.38092 * 119.93133 * 179.97438 * 19 18 17 21 21 C 1.38305 * 120.06440 * 0.26859 * 20 19 18 22 22 C 1.38260 * 120.14268 * 359.44817 * 21 20 19 23 23 C 1.50707 * 119.96469 * 180.27362 * 22 21 20 24 24 F 1.39897 * 109.46718 * 120.28115 * 23 22 21 25 25 F 1.39896 * 109.46851 * 240.27960 * 23 22 21 26 26 C 1.38131 * 120.06991 * 0.55564 * 22 21 20 27 27 H 1.08998 * 109.47067 * 300.00278 * 1 2 3 28 28 H 1.09003 * 109.46943 * 60.00028 * 1 2 3 29 29 H 1.08997 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47112 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47137 * 299.99853 * 3 2 1 32 32 H 1.08998 * 109.47326 * 59.99880 * 3 2 1 33 33 H 1.09003 * 109.46861 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47330 * 300.00012 * 4 2 1 35 35 H 0.96997 * 119.99914 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46899 * 179.97438 * 13 2 1 37 37 H 1.08997 * 109.47451 * 60.00069 * 13 2 1 38 38 H 0.96998 * 119.99548 * 0.02562 * 14 13 2 39 39 H 0.97001 * 119.99851 * 5.31179 * 17 15 14 40 40 H 1.08002 * 120.03274 * 359.97438 * 19 18 17 41 41 H 1.07997 * 119.96890 * 179.97438 * 20 19 18 42 42 H 1.08005 * 119.92798 * 179.72811 * 21 20 19 43 43 H 1.08997 * 109.46853 * 0.28096 * 23 22 21 44 44 H 1.07998 * 120.03947 * 179.73768 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6280 -1.5505 -3.8525 9 14 1.2480 0.3984 -5.2572 10 1 2.2255 1.4407 -5.6613 11 1 1.0837 -0.5808 -6.3614 12 1 -0.0606 1.0350 -4.9614 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4455 15 6 1.8776 -0.4908 3.6695 16 8 2.5765 -1.4794 3.7812 17 7 1.4279 0.1444 4.7700 18 6 1.8555 -0.2651 6.0381 19 6 3.1396 -0.7652 6.2116 20 6 3.5587 -1.1680 7.4642 21 6 2.6994 -1.0789 8.5442 22 6 1.4225 -0.5761 8.3759 23 6 0.4916 -0.4751 9.5567 24 9 0.1168 0.8600 9.7421 25 9 -0.6482 -1.2508 9.3195 26 6 0.9972 -0.1716 7.1255 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 -0.7217 -1.2489 34 1 1.6766 -1.7489 -1.2491 35 1 2.8623 -1.8820 -4.7335 36 1 3.1299 -0.7217 1.2491 37 1 1.6766 -1.7489 1.2493 38 1 0.9937 0.7579 2.3564 39 1 0.8079 0.8853 4.6831 40 1 3.8095 -0.8390 5.3677 41 1 4.5569 -1.5573 7.5997 42 1 3.0280 -1.3986 9.5221 43 1 0.9984 -0.8378 10.4509 44 1 -0.0017 0.2171 6.9937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349158366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:52 Heat of formation + Delta-G solvation = -119.159467 kcal Electronic energy + Delta-G solvation = -26903.230926 eV Core-core repulsion = 22683.718534 eV Total energy + Delta-G solvation = -4219.512392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.30342 -47.29002 -40.79186 -39.09309 -37.31068 -34.96144 -33.77148 -32.24478 -31.96904 -30.00491 -27.15201 -26.56927 -26.43650 -26.16715 -23.42120 -22.67649 -22.23013 -20.65573 -18.94017 -18.48356 -17.71604 -17.53142 -17.49487 -16.57721 -16.38341 -16.02811 -15.65781 -15.02902 -14.79650 -14.48153 -14.26409 -14.16183 -14.03123 -13.76294 -13.66444 -13.26050 -13.14137 -13.04897 -12.81285 -12.36592 -12.22576 -12.09807 -11.84394 -11.38059 -11.23148 -11.05661 -10.88892 -10.69491 -10.61561 -10.45999 -10.29476 -10.18815 -9.93169 -9.31940 -9.25795 -8.97434 -8.92423 -8.38975 -8.32718 -6.02971 -4.04483 0.84795 0.99469 2.51471 3.02012 3.28762 3.36045 3.36631 3.37612 3.48769 3.80795 4.10606 4.23606 4.42773 4.62932 4.70547 4.76285 4.99093 5.15151 5.26920 5.32501 5.40375 5.48596 5.56651 5.68191 5.90200 5.96067 6.10609 6.11186 6.15484 6.17116 6.23587 6.33370 6.47524 6.57691 6.67142 6.71028 6.83165 7.00356 7.02285 7.07423 7.60079 7.71800 7.89302 7.95425 8.36443 8.49813 9.00138 9.58815 11.08429 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.030865 B = 0.002014 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.949820 B =13900.205911 C =14320.146698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.145 3.855 14 N -0.729 5.729 15 C 0.699 3.301 16 O -0.575 6.575 17 N -0.691 5.691 18 C 0.177 3.823 19 C -0.100 4.100 20 C -0.101 4.101 21 C -0.109 4.109 22 C -0.153 4.153 23 C 0.315 3.685 24 F -0.201 7.201 25 F -0.200 7.200 26 C -0.114 4.114 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.396 0.604 39 H 0.407 0.593 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.119 0.881 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 4.672 26.514 27.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.022 3.978 14 N -0.383 5.383 15 C 0.399 3.601 16 O -0.451 6.451 17 N -0.339 5.339 18 C 0.081 3.919 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.154 4.154 23 C 0.261 3.739 24 F -0.182 7.182 25 F -0.181 7.181 26 C -0.135 4.135 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.232 0.768 39 H 0.242 0.758 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.136 0.864 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.427 3.666 26.334 26.626 hybrid contribution -1.044 1.161 -1.121 1.923 sum -2.472 4.828 25.213 25.789 Atomic orbital electron populations 1.21765 0.95233 1.01231 1.00216 1.20922 0.95515 0.95894 0.94931 1.21764 1.00593 0.95848 1.00218 1.19091 0.96408 0.95266 0.89380 1.21164 1.31270 1.12072 0.90481 0.92262 1.25018 0.95318 0.95077 0.99115 1.69962 1.36874 1.22988 1.23487 0.86640 0.79168 0.79402 0.83038 1.20773 1.21330 1.19958 1.21590 0.98858 0.95781 0.81583 1.45418 1.55623 1.32949 1.04338 1.15986 0.80787 0.82797 0.80492 1.90942 1.42121 1.26548 1.85532 1.42708 1.50433 1.37227 1.03539 1.17401 0.92601 0.98282 0.83656 1.21435 0.94412 0.97886 0.98293 1.21038 0.99958 0.99160 0.91765 1.20864 0.92540 0.99764 0.99646 1.20020 0.96042 1.05151 0.94233 1.20399 0.81841 0.73992 0.97652 1.93014 1.92568 1.36299 1.96331 1.93025 1.54166 1.74873 1.96039 1.20605 0.99082 1.02306 0.91531 0.95358 0.91352 0.93293 0.93296 0.91370 0.95341 0.96275 0.96265 0.93007 0.91675 0.91699 0.76842 0.75752 0.83848 0.84902 0.85299 0.86368 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 4 C 0.04 0.86 4.04 -27.89 -0.11 0.75 16 5 C -0.51 -13.31 7.65 -34.44 -0.26 -13.57 16 6 H 0.06 1.48 5.68 -52.48 -0.30 1.18 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 9 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 13 C 0.14 2.45 4.56 -4.04 -0.02 2.43 16 14 N -0.73 -9.91 4.96 -65.22 -0.32 -10.24 16 15 C 0.70 10.08 8.30 -86.92 -0.72 9.36 16 16 O -0.57 -10.43 14.03 5.29 0.07 -10.36 16 17 N -0.69 -7.57 5.35 -14.22 -0.08 -7.65 16 18 C 0.18 2.01 6.28 -83.69 -0.53 1.48 16 19 C -0.10 -1.16 8.66 -39.40 -0.34 -1.50 16 20 C -0.10 -0.91 10.04 -39.61 -0.40 -1.30 16 21 C -0.11 -0.84 9.67 -39.55 -0.38 -1.22 16 22 C -0.15 -1.34 5.37 -104.65 -0.56 -1.90 16 23 C 0.31 2.33 5.45 36.01 0.20 2.53 16 24 F -0.20 -1.80 17.26 2.25 0.04 -1.77 16 25 F -0.20 -1.92 17.26 2.25 0.04 -1.88 16 26 C -0.11 -1.14 9.51 -39.40 -0.37 -1.51 16 27 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 28 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 32 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.40 4.42 6.18 -40.82 -0.25 4.16 16 39 H 0.41 3.14 8.83 -40.82 -0.36 2.78 16 40 H 0.14 1.91 6.41 -52.49 -0.34 1.58 16 41 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.13 0.58 7.94 -52.48 -0.42 0.16 16 43 H 0.12 0.44 7.87 -51.93 -0.41 0.03 16 44 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -31.96 367.77 -8.07 -40.02 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.99 Total: 3.85 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -3.09 Total: -8.10 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.34 Total: -43.23 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.36 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.08 Total: -3.65 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.96 -8.07 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349158366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.136 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds