Wall clock time and date at job start Tue Mar 31 2020 15:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.52994 * 109.46950 * 239.99641 * 2 1 3 5 5 C 1.50699 * 109.47407 * 60.00353 * 4 2 1 6 6 H 1.08008 * 119.99578 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00403 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99869 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00152 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46928 * 90.00166 * 9 7 5 11 11 H 1.48498 * 109.47461 * 209.99969 * 9 7 5 12 12 H 1.48497 * 109.47265 * 330.00283 * 9 7 5 13 13 C 1.52998 * 109.46698 * 119.99923 * 2 1 3 14 14 N 1.46502 * 109.47521 * 299.99593 * 13 2 1 15 15 C 1.34771 * 120.00228 * 180.02562 * 14 13 2 16 16 O 1.21583 * 120.00195 * 359.97438 * 15 14 13 17 17 N 1.34782 * 120.00056 * 180.02562 * 15 14 13 18 18 C 1.39945 * 119.99970 * 185.31431 * 17 15 14 19 19 C 1.38885 * 120.07048 * 33.27031 * 18 17 15 20 20 C 1.38092 * 119.93133 * 179.97438 * 19 18 17 21 21 C 1.38305 * 120.06440 * 0.26859 * 20 19 18 22 22 C 1.38260 * 120.14268 * 359.44817 * 21 20 19 23 23 C 1.50707 * 119.96469 * 180.27362 * 22 21 20 24 24 F 1.39897 * 109.46718 * 120.28115 * 23 22 21 25 25 F 1.39896 * 109.46851 * 240.27960 * 23 22 21 26 26 C 1.38131 * 120.06991 * 0.55564 * 22 21 20 27 27 H 1.08998 * 109.47067 * 300.00278 * 1 2 3 28 28 H 1.09003 * 109.46943 * 60.00028 * 1 2 3 29 29 H 1.08997 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47112 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47137 * 299.99853 * 3 2 1 32 32 H 1.08998 * 109.47326 * 59.99880 * 3 2 1 33 33 H 1.09003 * 109.46861 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47330 * 300.00012 * 4 2 1 35 35 H 0.96997 * 119.99914 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46899 * 179.97438 * 13 2 1 37 37 H 1.08997 * 109.47451 * 60.00069 * 13 2 1 38 38 H 0.96998 * 119.99548 * 0.02562 * 14 13 2 39 39 H 0.97001 * 119.99851 * 5.31179 * 17 15 14 40 40 H 1.08002 * 120.03274 * 359.97438 * 19 18 17 41 41 H 1.07997 * 119.96890 * 179.97438 * 20 19 18 42 42 H 1.08005 * 119.92798 * 179.72811 * 21 20 19 43 43 H 1.08997 * 109.46853 * 0.28096 * 23 22 21 44 44 H 1.07998 * 120.03947 * 179.73768 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4818 -3.7319 8 7 2.6280 -1.5505 -3.8525 9 14 1.2480 0.3984 -5.2572 10 1 2.2255 1.4407 -5.6613 11 1 1.0837 -0.5808 -6.3614 12 1 -0.0606 1.0350 -4.9614 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4455 15 6 1.8776 -0.4908 3.6695 16 8 2.5765 -1.4794 3.7812 17 7 1.4279 0.1444 4.7700 18 6 1.8555 -0.2651 6.0381 19 6 3.1396 -0.7652 6.2116 20 6 3.5587 -1.1680 7.4642 21 6 2.6994 -1.0789 8.5442 22 6 1.4225 -0.5761 8.3759 23 6 0.4916 -0.4751 9.5567 24 9 0.1168 0.8600 9.7421 25 9 -0.6482 -1.2508 9.3195 26 6 0.9972 -0.1716 7.1255 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 -0.7217 -1.2489 34 1 1.6766 -1.7489 -1.2491 35 1 2.8623 -1.8820 -4.7335 36 1 3.1299 -0.7217 1.2491 37 1 1.6766 -1.7489 1.2493 38 1 0.9937 0.7579 2.3564 39 1 0.8079 0.8853 4.6831 40 1 3.8095 -0.8390 5.3677 41 1 4.5569 -1.5573 7.5997 42 1 3.0280 -1.3986 9.5221 43 1 0.9984 -0.8378 10.4509 44 1 -0.0017 0.2171 6.9937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349158366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:51 Heat of formation + Delta-G solvation = -138.411707 kcal Electronic energy + Delta-G solvation = -26904.065766 eV Core-core repulsion = 22683.718534 eV Total energy + Delta-G solvation = -4220.347232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.91779 -47.92039 -41.81302 -40.03962 -38.71935 -35.95499 -35.31930 -33.98144 -32.74939 -30.87553 -29.05143 -27.96522 -27.55425 -27.04819 -25.05901 -23.55378 -23.25317 -21.69986 -20.19220 -19.46448 -18.82581 -18.35469 -18.17614 -18.12967 -17.34461 -16.99158 -16.69340 -16.53770 -16.00096 -15.77720 -15.49687 -15.08680 -14.88223 -14.77585 -14.65785 -14.37176 -14.30534 -14.02720 -13.94040 -13.91644 -13.68253 -13.01749 -12.87950 -12.72421 -12.60688 -12.48793 -12.33632 -12.23219 -12.03616 -11.98402 -11.60182 -11.54399 -11.30526 -10.99173 -10.86452 -10.51051 -10.18076 -10.05585 -9.16447 -8.13850 -6.21427 0.10984 0.25952 1.42549 1.43064 1.48444 1.53557 1.95748 2.44226 2.68260 2.79348 3.12390 3.20757 3.31589 3.68165 3.92942 3.96006 4.08047 4.13248 4.21416 4.21602 4.24069 4.41557 4.53672 4.67354 4.72047 4.75945 4.80073 4.95949 5.08558 5.12425 5.18534 5.23825 5.34493 5.39111 5.44144 5.47878 5.50715 5.53341 5.57132 5.80278 5.86177 5.90600 5.93891 6.30895 6.90006 6.94255 7.39343 7.46269 8.98613 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.030865 B = 0.002014 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.949820 B =13900.205911 C =14320.146698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.260 1.260 13 C 0.161 3.839 14 N -0.716 5.716 15 C 0.699 3.301 16 O -0.616 6.616 17 N -0.675 5.675 18 C 0.152 3.848 19 C -0.124 4.124 20 C -0.104 4.104 21 C -0.095 4.095 22 C -0.160 4.160 23 C 0.313 3.687 24 F -0.211 7.211 25 F -0.214 7.214 26 C -0.119 4.119 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.069 0.931 33 H -0.013 1.013 34 H -0.013 1.013 35 H 0.259 0.741 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.412 0.588 39 H 0.423 0.577 40 H 0.117 0.883 41 H 0.153 0.847 42 H 0.170 0.830 43 H 0.166 0.834 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 6.445 29.060 29.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.063 4.063 3 C -0.179 4.179 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.784 3.216 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.184 1.184 13 C 0.036 3.964 14 N -0.372 5.372 15 C 0.400 3.600 16 O -0.496 6.496 17 N -0.324 5.324 18 C 0.057 3.943 19 C -0.145 4.145 20 C -0.122 4.122 21 C -0.114 4.114 22 C -0.161 4.161 23 C 0.260 3.740 24 F -0.192 7.192 25 F -0.196 7.196 26 C -0.140 4.140 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.006 0.994 34 H 0.005 0.995 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.250 0.750 39 H 0.262 0.738 40 H 0.135 0.865 41 H 0.171 0.829 42 H 0.188 0.812 43 H 0.182 0.818 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.768 5.503 28.918 29.567 hybrid contribution -0.598 0.573 -1.783 1.966 sum -3.367 6.077 27.135 28.010 Atomic orbital electron populations 1.21702 0.93603 1.00985 1.01657 1.20702 0.96681 0.96332 0.92629 1.21700 0.99983 0.94567 1.01665 1.18977 0.94391 0.94246 0.92251 1.21583 1.30376 1.12026 0.91023 0.90904 1.25951 0.95740 0.95885 1.02736 1.70120 1.38781 1.24968 1.24068 0.85543 0.79168 0.78091 0.78819 1.20183 1.21674 1.18362 1.21130 0.97768 0.95025 0.82472 1.45029 1.55763 1.33168 1.03216 1.16066 0.80381 0.82451 0.81128 1.90920 1.43939 1.28534 1.86172 1.42431 1.50140 1.37177 1.02649 1.17567 0.93041 0.99789 0.83890 1.21424 0.94595 0.99611 0.98847 1.21326 1.01244 0.98556 0.91115 1.21290 0.91521 0.97686 1.00896 1.20360 0.96900 1.04542 0.94320 1.20844 0.81140 0.73400 0.98653 1.92994 1.92656 1.37240 1.96354 1.92998 1.55125 1.75232 1.96220 1.20765 0.99211 1.02298 0.91741 0.91167 0.92551 0.94453 0.94352 0.92535 0.91171 0.99430 0.99505 0.93202 0.93351 0.93581 0.74982 0.73815 0.86452 0.82924 0.81218 0.81757 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 2 C -0.06 -2.30 0.54 -52.19 -0.03 -2.32 16 3 C -0.12 -3.93 8.05 71.98 0.58 -3.35 16 4 C 0.04 1.95 4.04 29.85 0.12 2.07 16 5 C -0.51 -27.05 7.65 25.60 0.20 -26.86 16 6 H 0.07 3.59 5.68 -2.91 -0.02 3.57 16 7 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 8 N -0.94 -56.75 13.29 21.45 0.28 -56.47 16 9 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 13 C 0.16 5.56 4.56 86.38 0.39 5.95 16 14 N -0.72 -18.84 4.96 -478.54 -2.37 -21.22 16 15 C 0.70 20.12 8.30 179.05 1.49 21.61 16 16 O -0.62 -23.16 14.03 -3.98 -0.06 -23.21 16 17 N -0.68 -14.25 5.35 -317.18 -1.70 -15.95 16 18 C 0.15 3.38 6.28 38.15 0.24 3.61 16 19 C -0.12 -2.90 8.66 22.39 0.19 -2.71 16 20 C -0.10 -1.70 10.04 22.25 0.22 -1.48 16 21 C -0.10 -1.15 9.67 22.29 0.22 -0.94 16 22 C -0.16 -2.37 5.37 -19.88 -0.11 -2.48 16 23 C 0.31 3.61 5.45 71.24 0.39 4.00 16 24 F -0.21 -3.25 17.26 44.97 0.78 -2.47 16 25 F -0.21 -3.62 17.26 44.97 0.78 -2.85 16 26 C -0.12 -2.19 9.51 22.39 0.21 -1.98 16 27 H 0.07 1.68 6.86 -2.39 -0.02 1.66 16 28 H 0.06 1.97 6.62 -2.39 -0.02 1.96 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.96 6.62 -2.39 -0.02 1.95 16 32 H 0.07 1.67 6.86 -2.39 -0.02 1.65 16 33 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 35 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.41 8.07 6.18 -92.71 -0.57 7.50 16 39 H 0.42 5.78 8.83 -92.71 -0.82 4.96 16 40 H 0.12 3.33 6.41 -2.91 -0.02 3.31 16 41 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.17 0.63 7.94 -2.91 -0.02 0.61 16 43 H 0.17 0.41 7.87 -2.39 -0.02 0.39 16 44 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -73.53 367.77 4.55 -68.99 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -0.35 Total: 16.02 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 5.16 Total: -8.14 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -3.79 Total: -93.64 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.06 Total: -23.21 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 1.55 Total: -5.32 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -73.53 4.55 -68.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349158366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.426 kcal (2) G-P(sol) polarization free energy of solvation -73.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds