Wall clock time and date at job start Tue Mar 31 2020 14:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46670 * 2 1 4 4 N 1.30300 * 126.34227 * 89.98061 * 3 2 1 5 5 N 1.28525 * 110.07877 * 180.02562 * 4 3 2 6 6 C 1.31280 * 109.85761 * 359.97438 * 5 4 3 7 7 S 1.76195 * 126.48497 * 180.02562 * 6 5 4 8 8 N 1.36545 * 107.03099 * 0.27153 * 6 5 4 9 9 C 1.46501 * 127.14058 * 179.73555 * 8 6 5 10 10 C 1.53002 * 109.46709 * 90.02236 * 9 8 6 11 11 N 1.46501 * 109.46709 * 180.02562 * 10 9 8 12 12 C 1.34776 * 120.00180 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99769 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00418 * 180.02562 * 12 11 10 15 15 C 1.52993 * 109.47051 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47019 * 179.97438 * 15 14 12 17 17 C 1.53006 * 109.47255 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.46913 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00299 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99612 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99644 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99961 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.46995 * 90.00793 * 22 20 18 24 24 H 1.48501 * 109.46884 * 210.00105 * 22 20 18 25 25 H 1.48499 * 109.47367 * 330.00471 * 22 20 18 26 26 H 1.09000 * 109.47232 * 299.99597 * 1 2 3 27 27 H 1.08996 * 109.47380 * 60.00378 * 1 2 3 28 28 H 1.09007 * 109.46447 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47232 * 240.00403 * 2 1 3 30 30 H 1.08996 * 109.47380 * 119.99622 * 2 1 3 31 31 H 1.41005 * 99.99931 * 90.02857 * 7 6 5 32 32 H 1.08988 * 109.46993 * 210.02121 * 9 8 6 33 33 H 1.08999 * 109.47138 * 330.02385 * 9 8 6 34 34 H 1.09000 * 109.47556 * 299.99365 * 10 9 8 35 35 H 1.08999 * 109.47199 * 60.00186 * 10 9 8 36 36 H 0.97001 * 119.99883 * 359.97438 * 11 10 9 37 37 H 1.09000 * 109.46390 * 299.99524 * 14 12 11 38 38 H 1.08999 * 109.47103 * 59.99572 * 14 12 11 39 39 H 1.08994 * 109.47605 * 299.99674 * 15 14 12 40 40 H 1.09002 * 109.47676 * 59.99831 * 15 14 12 41 41 H 1.09000 * 109.47341 * 300.00321 * 16 15 14 42 42 H 1.09000 * 109.47398 * 60.00032 * 16 15 14 43 43 H 1.08994 * 109.46882 * 299.99522 * 17 16 15 44 44 H 1.08999 * 109.47118 * 60.00218 * 17 16 15 45 45 H 0.96995 * 120.00014 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2892 2.1490 1.0496 5 7 2.7000 3.3125 0.6896 6 6 2.7280 3.3898 -0.6206 7 16 3.2215 4.7847 -1.5774 8 7 2.2971 2.1868 -1.1016 9 6 2.1519 1.7964 -2.5061 10 6 3.4600 1.1757 -3.0008 11 7 3.3149 0.7859 -4.4055 12 6 4.3472 0.2138 -5.0562 13 8 5.3965 0.0220 -4.4789 14 6 4.1982 -0.1867 -6.5014 15 6 5.5062 -0.8075 -6.9960 16 6 5.3547 -1.2146 -8.4630 17 6 6.6626 -1.8360 -8.9575 18 6 6.5135 -2.2364 -10.4027 19 1 5.5793 -2.0653 -10.9169 20 6 7.5695 -2.8223 -11.0681 21 7 7.4392 -3.1722 -12.3292 22 14 9.1850 -3.1189 -10.1785 23 1 9.1620 -4.4621 -9.5455 24 1 10.3054 -3.0490 -11.1506 25 1 9.3717 -2.0817 -9.1323 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 4.5992 4.5154 -1.7103 32 1 1.3462 1.0684 -2.5994 33 1 1.9178 2.6763 -3.1054 34 1 4.2657 1.9038 -2.9076 35 1 3.6941 0.2959 -2.4015 36 1 2.4756 0.9390 -4.8671 37 1 3.3920 -0.9142 -6.5954 38 1 3.9650 0.6937 -7.1002 39 1 6.3122 -0.0798 -6.9019 40 1 5.7399 -1.6878 -6.3972 41 1 4.5488 -1.9425 -8.5568 42 1 5.1209 -0.3345 -9.0621 43 1 7.4687 -1.1084 -8.8638 44 1 6.8959 -2.7162 -8.3584 45 1 8.1822 -3.5840 -12.7974 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806932905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:06 Heat of formation + Delta-G solvation = 17.733179 kcal Electronic energy + Delta-G solvation = -24260.538927 eV Core-core repulsion = 20633.095784 eV Total energy + Delta-G solvation = -3627.443144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.152 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.58059 -40.03596 -36.98292 -35.19662 -34.88159 -34.31877 -32.65568 -30.73511 -30.24306 -29.47507 -26.23951 -25.05284 -24.13981 -23.20651 -22.12757 -21.34364 -20.49040 -20.10860 -18.74647 -17.55039 -17.29058 -16.78902 -16.56865 -16.43727 -15.95167 -15.63531 -15.44403 -14.98534 -14.59906 -14.26316 -14.05546 -14.02059 -13.39965 -13.19411 -12.78503 -12.70677 -12.55604 -12.33549 -12.20713 -12.08122 -12.02339 -11.82500 -11.78607 -11.19173 -11.06574 -10.89334 -10.82343 -10.62069 -10.19940 -9.90049 -9.74603 -9.72059 -9.61036 -9.52102 -9.17242 -8.98694 -8.53661 -6.04788 -4.02512 0.38705 0.77959 1.62126 1.86693 2.32054 2.41426 2.83977 3.31441 3.38859 3.44141 3.60155 3.71965 3.81331 4.13810 4.35497 4.45875 4.52180 4.56845 4.60058 4.72825 4.77786 5.02435 5.06714 5.12350 5.16094 5.19605 5.29901 5.31467 5.37593 5.53868 5.63097 5.83392 5.92423 6.01883 6.04568 6.31258 6.59144 6.72982 6.91530 7.04326 7.31796 7.44626 7.79984 7.92611 8.00596 8.53477 8.99904 9.58422 11.08623 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021181 B = 0.001818 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.651292 B =15399.757810 C =15921.302274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C 0.208 3.792 4 N -0.289 5.289 5 N -0.236 5.236 6 C 0.144 3.856 7 S -0.009 6.009 8 N -0.456 5.456 9 C 0.089 3.911 10 C 0.108 3.892 11 N -0.736 5.736 12 C 0.516 3.484 13 O -0.532 6.532 14 C -0.137 4.137 15 C -0.107 4.107 16 C -0.102 4.102 17 C -0.016 4.016 18 C -0.520 4.520 19 H 0.071 0.929 20 C 0.064 3.936 21 N -0.905 5.905 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.265 1.265 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.404 0.596 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.015 0.985 44 H 0.011 0.989 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.481 12.002 23.844 31.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.083 4.083 3 C -0.060 4.060 4 N -0.130 5.130 5 N -0.079 5.079 6 C -0.230 4.230 7 S 0.141 5.859 8 N -0.150 5.150 9 C -0.035 4.035 10 C -0.018 4.018 11 N -0.392 5.392 12 C 0.303 3.697 13 O -0.406 6.406 14 C -0.177 4.177 15 C -0.145 4.145 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.558 4.558 19 H 0.089 0.911 20 C -0.136 4.136 21 N -0.544 5.544 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.190 1.190 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.135 0.865 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.239 0.761 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.034 0.966 44 H 0.029 0.971 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.429 12.984 25.061 32.658 hybrid contribution 1.023 -1.430 -0.744 1.909 sum -15.406 11.554 24.318 31.019 Atomic orbital electron populations 1.21764 0.92896 1.03181 1.02822 1.20177 0.97128 0.85656 1.05342 1.25367 1.00891 0.97469 0.82297 1.74180 1.16315 0.98788 1.23767 1.74823 1.13681 1.12110 1.07308 1.25970 1.10321 0.91899 0.94849 1.87126 1.12656 1.21843 1.64313 1.46912 1.48607 1.11197 1.08283 1.22183 0.99447 1.03519 0.78334 1.21462 0.96093 1.00471 0.83751 1.45876 1.17139 1.64802 1.11348 1.21193 0.82770 0.75985 0.89715 1.90734 1.27610 1.53303 1.68998 1.21787 1.02392 1.02901 0.90601 1.21500 0.94497 1.00717 0.97816 1.21477 1.00195 1.00056 0.92272 1.19578 0.93358 0.95538 0.96830 1.21170 1.00549 1.39567 0.94531 0.91091 1.25050 0.98768 0.95073 0.94750 1.69917 1.32218 1.42444 1.09825 0.86774 0.83568 0.79144 0.79796 1.20312 1.21422 1.18959 0.91493 0.92613 0.90687 0.89448 0.87539 0.92541 0.87122 0.86455 0.91204 0.90691 0.76116 0.88688 0.88670 0.91781 0.91774 0.92800 0.92768 0.96640 0.97071 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.89 37.16 0.37 -0.15 16 2 C -0.04 -0.20 6.15 -27.88 -0.17 -0.37 16 3 C 0.21 1.69 7.32 -153.99 -1.13 0.56 16 4 N -0.29 -3.34 12.17 33.00 0.40 -2.94 16 5 N -0.24 -2.87 12.23 30.68 0.38 -2.49 16 6 C 0.14 1.34 8.37 -88.34 -0.74 0.60 16 7 S -0.01 -0.06 25.78 -107.50 -2.77 -2.83 16 8 N -0.46 -3.26 2.81 -113.54 -0.32 -3.58 16 9 C 0.09 0.34 5.87 -4.04 -0.02 0.32 16 10 C 0.11 0.68 6.00 -4.04 -0.02 0.66 16 11 N -0.74 -4.67 5.56 -60.29 -0.33 -5.00 16 12 C 0.52 5.65 7.83 -10.98 -0.09 5.56 16 13 O -0.53 -8.38 15.98 5.55 0.09 -8.29 16 14 C -0.14 -1.44 5.70 -27.89 -0.16 -1.60 16 15 C -0.11 -1.66 4.50 -26.74 -0.12 -1.78 16 16 C -0.10 -1.90 5.15 -26.73 -0.14 -2.04 16 17 C -0.02 -0.37 4.04 -27.88 -0.11 -0.49 16 18 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 19 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 20 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 22 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.07 0.16 8.14 -51.92 -0.42 -0.26 16 29 H 0.09 0.27 7.95 -51.93 -0.41 -0.14 16 30 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.11 0.67 9.55 96.90 0.93 1.60 16 32 H 0.11 0.16 7.91 -51.94 -0.41 -0.25 16 33 H 0.12 0.29 7.86 -51.93 -0.41 -0.11 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.40 1.13 8.47 -40.82 -0.35 0.79 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 40 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 44 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -37.35 393.10 -9.37 -46.72 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -6.07 Total: -5.60 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -2.76 Total: -12.07 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.90 Total: -41.20 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.77 Total: -2.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.35 -9.37 -46.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806932905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.450 kcal (2) G-P(sol) polarization free energy of solvation -37.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds