Wall clock time and date at job start Tue Mar 31 2020 15:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46919 * 2 1 4 4 N 1.46901 * 109.46740 * 119.99626 * 2 1 3 5 5 C 1.46904 * 110.99976 * 275.00190 * 4 2 1 6 6 H 1.08998 * 109.47115 * 34.99737 * 5 4 2 7 7 C 1.53002 * 109.47167 * 274.99980 * 5 4 2 8 8 C 1.50700 * 109.46903 * 155.00224 * 5 4 2 9 9 C 1.38254 * 120.00391 * 25.00230 * 8 5 4 10 10 C 1.38211 * 120.07428 * 179.97438 * 9 8 5 11 11 C 1.38258 * 120.06964 * 0.04065 * 10 9 8 12 12 C 1.38374 * 120.00076 * 359.97438 * 11 10 9 13 13 F 1.35093 * 120.03553 * 180.02562 * 12 11 10 14 14 C 1.38376 * 119.99830 * 204.72081 * 8 5 4 15 15 F 1.35105 * 120.03245 * 0.02747 * 14 8 5 16 16 C 1.50696 * 109.47467 * 239.99762 * 2 1 3 17 17 O 1.21280 * 120.00095 * 240.00497 * 16 2 1 18 18 N 1.34771 * 119.99966 * 60.00047 * 16 2 1 19 19 C 1.46496 * 120.00157 * 359.97438 * 18 16 2 20 20 C 1.46506 * 120.00084 * 180.02562 * 18 16 2 21 21 C 1.50699 * 109.46928 * 270.00021 * 20 18 16 22 22 H 1.08003 * 119.99963 * 0.02562 * 21 20 18 23 23 C 1.37873 * 119.99865 * 179.97438 * 21 20 18 24 24 N 1.31514 * 120.00518 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99987 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46922 * 90.00621 * 25 23 21 27 27 H 1.48500 * 109.47411 * 210.00442 * 25 23 21 28 28 H 1.48494 * 109.47378 * 330.00637 * 25 23 21 29 29 H 1.09002 * 109.47276 * 300.00381 * 1 2 3 30 30 H 1.09001 * 109.46709 * 60.00399 * 1 2 3 31 31 H 1.08999 * 109.47271 * 179.97438 * 1 2 3 32 32 H 1.00895 * 110.99933 * 38.95403 * 4 2 1 33 33 H 1.08998 * 109.47423 * 179.97438 * 7 5 4 34 34 H 1.09004 * 109.46853 * 300.00357 * 7 5 4 35 35 H 1.09002 * 109.46753 * 59.99986 * 7 5 4 36 36 H 1.07999 * 119.96248 * 359.96817 * 9 8 5 37 37 H 1.07997 * 119.96824 * 180.02562 * 10 9 8 38 38 H 1.07992 * 120.00148 * 180.02562 * 11 10 9 39 39 H 1.08995 * 109.47445 * 269.99904 * 19 18 16 40 40 H 1.09001 * 109.47057 * 30.00532 * 19 18 16 41 41 H 1.08999 * 109.47333 * 150.00092 * 19 18 16 42 42 H 1.09004 * 109.47073 * 29.99849 * 20 18 16 43 43 H 1.09000 * 109.47212 * 149.99932 * 20 18 16 44 44 H 0.96992 * 120.00316 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2227 2.3469 6 1 1.2575 0.9331 2.2906 7 6 3.4110 0.9810 2.3225 8 6 1.9784 -0.5675 3.6259 9 6 2.3588 -1.8964 3.6504 10 6 2.2646 -2.6224 4.8227 11 6 1.7890 -2.0213 5.9734 12 6 1.4072 -0.6915 5.9523 13 9 0.9429 -0.1033 7.0763 14 6 1.5078 0.0387 4.7774 15 9 1.1407 1.3388 4.7556 16 6 2.0324 -0.7104 -1.2304 17 8 2.7296 -1.6965 -1.1190 18 7 1.7069 -0.2500 -2.4545 19 6 0.8642 0.9407 -2.5890 20 6 2.1949 -0.9410 -3.6506 21 6 3.5226 -0.3580 -4.0610 22 1 3.9594 0.4464 -3.4878 23 6 4.1801 -0.8523 -5.1674 24 7 3.6484 -1.8322 -5.8651 25 14 5.8255 -0.1292 -5.6765 26 1 6.9217 -0.8705 -5.0026 27 1 5.9825 -0.2440 -7.1487 28 1 5.8805 1.3016 -5.2830 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.4495 -1.4978 1.4101 33 1 3.4574 1.6604 3.1736 34 1 4.2358 0.2706 2.3787 35 1 3.4861 1.5525 1.3974 36 1 2.7298 -2.3679 2.7523 37 1 2.5626 -3.6603 4.8399 38 1 1.7162 -2.5895 6.8889 39 1 -0.1836 0.6424 -2.6226 40 1 1.0273 1.5995 -1.7361 41 1 1.1219 1.4663 -3.5085 42 1 2.3156 -2.0023 -3.4333 43 1 1.4769 -0.8155 -4.4611 44 1 4.1108 -2.1797 -6.6437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159512708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:42 Heat of formation + Delta-G solvation = -87.173802 kcal Electronic energy + Delta-G solvation = -27886.377201 eV Core-core repulsion = 23668.251812 eV Total energy + Delta-G solvation = -4218.125389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.73053 -48.81092 -39.90765 -39.06090 -36.64370 -34.77649 -33.22810 -32.35184 -30.63633 -29.87539 -28.56786 -27.36043 -26.07513 -24.59063 -23.75550 -23.08152 -21.97885 -20.71679 -18.77361 -18.13889 -17.50047 -17.24557 -16.59335 -16.55334 -16.33736 -15.69195 -15.36991 -15.22346 -15.04267 -14.79063 -14.53942 -14.45613 -14.03898 -13.78920 -13.39787 -13.14943 -13.03179 -12.80405 -12.35366 -12.29564 -12.19437 -12.15219 -12.04850 -11.87969 -11.82693 -11.36563 -11.24902 -11.11170 -11.00617 -10.83322 -10.55753 -10.13397 -9.60308 -9.26411 -9.04181 -8.88991 -8.41776 -8.32228 -7.59290 -6.02599 -4.07098 0.61914 0.64820 3.04748 3.32564 3.36799 3.38533 3.40417 3.50411 3.71296 4.02942 4.15420 4.27016 4.47039 4.53339 4.58372 4.84068 4.94511 4.96266 5.12116 5.18840 5.23158 5.31828 5.39355 5.45146 5.47675 5.63469 5.66725 5.71766 5.76429 5.79644 5.88691 5.92670 5.98124 6.00713 6.20327 6.25638 6.44283 6.82101 7.12160 7.29979 7.46509 7.58085 7.94399 8.25757 8.46918 8.93486 9.17947 9.58215 11.05441 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021805 B = 0.002632 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.795839 B =10636.907873 C =10893.860545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.067 3.933 3 H 0.099 0.901 4 N -0.656 5.656 5 C 0.126 3.874 6 H 0.060 0.940 7 C -0.137 4.137 8 C -0.091 4.091 9 C -0.086 4.086 10 C -0.098 4.098 11 C -0.130 4.130 12 C 0.064 3.936 13 F -0.131 7.131 14 C 0.070 3.930 15 F -0.127 7.127 16 C 0.511 3.489 17 O -0.521 6.521 18 N -0.605 5.605 19 C 0.082 3.918 20 C 0.247 3.753 21 C -0.524 4.524 22 H 0.057 0.943 23 C 0.060 3.940 24 N -0.896 5.896 25 Si 0.898 3.102 26 H -0.279 1.279 27 H -0.286 1.286 28 H -0.275 1.275 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.348 0.652 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.156 0.844 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.031 0.969 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 3.394 21.708 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.046 4.046 3 H 0.117 0.883 4 N -0.288 5.288 5 C 0.016 3.984 6 H 0.078 0.922 7 C -0.194 4.194 8 C -0.092 4.092 9 C -0.105 4.105 10 C -0.116 4.116 11 C -0.149 4.149 12 C 0.043 3.957 13 F -0.110 7.110 14 C 0.049 3.951 15 F -0.106 7.106 16 C 0.296 3.704 17 O -0.396 6.396 18 N -0.338 5.338 19 C -0.062 4.062 20 C 0.128 3.872 21 C -0.563 4.563 22 H 0.075 0.925 23 C -0.141 4.141 24 N -0.535 5.535 25 Si 0.725 3.275 26 H -0.205 1.205 27 H -0.212 1.212 28 H -0.200 1.200 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.169 0.831 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.174 0.826 37 H 0.160 0.840 38 H 0.162 0.838 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.764 2.897 21.456 22.683 hybrid contribution -0.240 0.954 0.096 0.989 sum -7.004 3.852 21.552 22.986 Atomic orbital electron populations 1.22702 0.95607 1.03213 1.03503 1.21542 0.93694 0.98807 0.90596 0.88306 1.60296 1.58289 1.08574 1.01646 1.20368 0.99058 0.93013 0.85937 0.92214 1.21801 0.96091 0.99735 1.01807 1.19975 0.99756 0.95483 0.94034 1.21275 0.97141 0.92422 0.99634 1.21173 0.98049 1.00863 0.91494 1.21125 1.00740 0.92297 1.00759 1.17639 1.03572 0.92469 0.81982 1.91522 1.86383 1.84148 1.48930 1.17494 1.04207 0.79531 0.93829 1.91517 1.89304 1.32797 1.96965 1.20049 0.81240 0.85303 0.83786 1.90658 1.36759 1.26263 1.85921 1.48122 1.50069 1.28324 1.07316 1.21761 0.93734 0.88304 1.02394 1.19259 0.94133 0.93681 0.80151 1.21439 1.04807 1.18991 1.11067 0.92503 1.24932 0.97914 0.94987 0.96295 1.69929 1.38956 1.26187 1.18444 0.86508 0.84100 0.79412 0.77452 1.20533 1.21197 1.19957 0.92339 0.89894 0.91911 0.83149 0.92532 0.91179 0.91668 0.82602 0.83972 0.83823 0.93592 0.92539 0.90891 0.93890 0.95119 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 8.78 37.16 0.33 -1.85 16 2 C 0.07 0.95 2.00 -68.86 -0.14 0.82 16 3 H 0.10 1.32 6.37 -51.93 -0.33 0.99 16 4 N -0.66 -8.69 4.80 -102.16 -0.49 -9.18 16 5 C 0.13 1.41 2.41 -68.86 -0.17 1.25 16 6 H 0.06 0.65 6.77 -51.93 -0.35 0.30 16 7 C -0.14 -1.57 9.38 37.16 0.35 -1.22 16 8 C -0.09 -0.95 4.93 -104.57 -0.52 -1.46 16 9 C -0.09 -0.80 8.86 -39.59 -0.35 -1.15 16 10 C -0.10 -0.73 10.04 -39.58 -0.40 -1.13 16 11 C -0.13 -1.02 10.02 -39.52 -0.40 -1.41 16 12 C 0.06 0.64 7.31 -39.36 -0.29 0.35 16 13 F -0.13 -1.45 17.18 2.25 0.04 -1.41 16 14 C 0.07 0.76 7.25 -39.36 -0.29 0.48 16 15 F -0.13 -1.51 16.49 2.25 0.04 -1.48 16 16 C 0.51 10.31 7.14 -10.99 -0.08 10.23 16 17 O -0.52 -12.87 16.01 5.56 0.09 -12.78 16 18 N -0.60 -12.51 2.86 -182.96 -0.52 -13.03 16 19 C 0.08 1.25 8.80 59.84 0.53 1.78 16 20 C 0.25 6.41 5.16 -5.19 -0.03 6.39 16 21 C -0.52 -14.85 9.39 -34.44 -0.32 -15.17 16 22 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 25 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 29 H 0.06 0.56 7.43 -51.93 -0.39 0.18 16 30 H 0.08 0.90 4.53 -51.93 -0.24 0.66 16 31 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.35 4.33 7.00 -39.29 -0.28 4.05 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.78 7.43 -51.93 -0.39 0.39 16 36 H 0.16 1.53 6.97 -52.49 -0.37 1.16 16 37 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.05 0.60 6.95 -51.93 -0.36 0.23 16 40 H 0.06 0.70 6.01 -51.93 -0.31 0.39 16 41 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 42 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 43 H 0.03 0.80 8.07 -51.93 -0.42 0.39 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -33.33 368.09 -7.33 -40.66 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.88 Total: 1.15 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.86 Total: -0.46 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.28 Total: -48.11 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.89 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.33 -7.33 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159512708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.515 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds