Wall clock time and date at job start Tue Mar 31 2020 15:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.46781 * 2 1 4 4 C 1.50696 * 109.47349 * 119.99646 * 2 1 3 5 5 C 1.38205 * 120.00091 * 16.12452 * 4 2 1 6 6 C 1.38429 * 120.00275 * 179.97438 * 5 4 2 7 7 F 1.35101 * 120.00210 * 179.97438 * 6 5 4 8 8 C 1.38471 * 119.99685 * 359.97438 * 6 5 4 9 9 C 1.38164 * 120.00237 * 0.02562 * 8 6 5 10 10 C 1.38433 * 120.00250 * 195.83845 * 4 2 1 11 11 F 1.35103 * 119.99778 * 0.03383 * 10 4 2 12 12 N 1.46499 * 109.47294 * 240.00160 * 2 1 3 13 13 C 1.46496 * 120.00073 * 294.59231 * 12 2 1 14 14 C 1.34781 * 120.00061 * 114.59191 * 12 2 1 15 15 O 1.21277 * 119.99910 * 0.02562 * 14 12 2 16 16 C 1.50692 * 119.99950 * 180.02562 * 14 12 2 17 17 H 1.08997 * 109.47425 * 319.99697 * 16 14 12 18 18 N 1.46897 * 109.47286 * 199.99799 * 16 14 12 19 19 C 1.53003 * 109.47096 * 80.00079 * 16 14 12 20 20 C 1.53005 * 109.47090 * 185.00188 * 19 16 14 21 21 C 1.50698 * 109.47118 * 179.97438 * 20 19 16 22 22 H 1.08003 * 119.99808 * 0.02562 * 21 20 19 23 23 C 1.37872 * 119.99916 * 179.97438 * 21 20 19 24 24 N 1.31520 * 120.00287 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99943 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47138 * 60.00723 * 25 23 21 27 27 H 1.48501 * 109.47288 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47164 * 300.00304 * 25 23 21 29 29 H 1.09002 * 109.46771 * 299.99490 * 1 2 3 30 30 H 1.08990 * 109.47325 * 60.00068 * 1 2 3 31 31 H 1.09001 * 109.46253 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.99978 * 359.97438 * 5 4 2 33 33 H 1.07999 * 119.99447 * 179.97438 * 8 6 5 34 34 H 1.07996 * 119.99715 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47067 * 274.63414 * 13 12 2 36 36 H 1.09001 * 109.46882 * 34.63219 * 13 12 2 37 37 H 1.08997 * 109.47336 * 154.62699 * 13 12 2 38 38 H 1.00905 * 111.00612 * 176.04614 * 18 16 14 39 39 H 1.00901 * 111.00049 * 300.00437 * 18 16 14 40 40 H 1.08998 * 109.47207 * 65.00289 * 19 16 14 41 41 H 1.08998 * 109.46947 * 304.99887 * 19 16 14 42 42 H 1.08999 * 109.47300 * 59.99516 * 20 19 16 43 43 H 1.09007 * 109.47109 * 299.99855 * 20 19 16 44 44 H 0.96998 * 120.00100 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.1787 -1.5155 1.9605 6 6 1.6403 -2.1685 3.0905 7 9 0.8057 -2.9552 3.8044 8 6 2.9575 -2.0152 3.4891 9 6 3.8110 -1.2102 2.7593 10 6 3.3505 -0.5610 1.6263 11 9 4.1864 0.2221 0.9097 12 7 2.0184 -0.6906 -1.1962 13 6 1.7648 -2.1229 -1.3699 14 6 2.7010 -0.0081 -2.1368 15 8 2.9113 1.1776 -1.9928 16 6 3.2028 -0.7183 -3.3675 17 1 3.5812 -1.7022 -3.0903 18 7 4.2829 0.0668 -3.9798 19 6 2.0564 -0.8761 -4.3684 20 6 2.5327 -1.7053 -5.5628 21 6 1.4034 -1.8613 -6.5484 22 1 0.4422 -1.4133 -6.3435 23 6 1.5975 -2.5749 -7.7120 24 7 2.7681 -3.1200 -7.9616 25 14 0.1974 -2.7687 -8.9333 26 1 -0.2390 -1.4292 -9.4027 27 1 0.6596 -3.5735 -10.0926 28 1 -0.9415 -3.4581 -8.2754 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 0.1515 -1.6354 1.6494 33 1 3.3175 -2.5243 4.3709 34 1 4.8382 -1.0904 3.0705 35 1 2.5398 -2.6938 -0.8584 36 1 0.7912 -2.3732 -0.9485 37 1 1.7746 -2.3675 -2.4320 38 1 4.6801 -0.4190 -4.7700 39 1 3.9571 0.9840 -4.2458 40 1 1.7372 0.1074 -4.7132 41 1 1.2198 -1.3812 -3.8859 42 1 2.8520 -2.6888 -5.2181 43 1 3.3694 -1.2002 -6.0454 44 1 2.9045 -3.6223 -8.7801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424105708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:47 Heat of formation + Delta-G solvation = -105.284687 kcal Electronic energy + Delta-G solvation = -28204.466402 eV Core-core repulsion = 23985.555666 eV Total energy + Delta-G solvation = -4218.910736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.25456 -49.06231 -40.36096 -39.07946 -36.26318 -35.48605 -33.01816 -32.68346 -30.46936 -29.90611 -29.58950 -26.91913 -26.65988 -24.87728 -23.71318 -22.81888 -21.40502 -20.32888 -18.94023 -18.08194 -17.62805 -17.46169 -17.23840 -16.47214 -16.16218 -15.89184 -15.54482 -15.27104 -14.70206 -14.67875 -14.52304 -14.49097 -14.18455 -13.93578 -13.59550 -13.39729 -13.18915 -12.97929 -12.66570 -12.44453 -12.26375 -12.20389 -12.15740 -12.06330 -11.68760 -11.38083 -11.28249 -11.05655 -10.92165 -10.72066 -9.98943 -9.94408 -9.61293 -9.29266 -9.18619 -8.86189 -8.66630 -8.45231 -8.17241 -6.09956 -4.13377 0.55232 0.62560 2.78874 2.89651 3.25053 3.27170 3.32318 3.34490 3.77389 3.87820 4.11420 4.22332 4.37822 4.53476 4.72429 4.80358 4.91662 5.04723 5.12797 5.19623 5.26151 5.28708 5.43744 5.48767 5.52362 5.57647 5.59624 5.63939 5.71377 5.74848 5.78365 5.80256 6.00094 6.26442 6.41287 6.48303 6.53714 6.85022 7.34327 7.49365 7.57643 7.62870 7.86793 7.91761 8.29092 8.40418 8.92350 9.51628 11.00848 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.002891 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.700624 B = 9684.189227 C =10368.672877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.178 3.822 3 H 0.115 0.885 4 C -0.102 4.102 5 C -0.116 4.116 6 C 0.086 3.914 7 F -0.136 7.136 8 C -0.123 4.123 9 C -0.128 4.128 10 C 0.110 3.890 11 F -0.122 7.122 12 N -0.611 5.611 13 C 0.069 3.931 14 C 0.530 3.470 15 O -0.532 6.532 16 C 0.076 3.924 17 H 0.096 0.904 18 N -0.830 5.830 19 C -0.139 4.139 20 C 0.025 3.975 21 C -0.525 4.525 22 H 0.054 0.946 23 C 0.059 3.941 24 N -0.893 5.893 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.354 0.646 39 H 0.345 0.655 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 1.600 23.410 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.133 0.867 4 C -0.104 4.104 5 C -0.136 4.136 6 C 0.066 3.934 7 F -0.114 7.114 8 C -0.142 4.142 9 C -0.147 4.147 10 C 0.090 3.910 11 F -0.100 7.100 12 N -0.346 5.346 13 C -0.074 4.074 14 C 0.319 3.681 15 O -0.407 6.407 16 C -0.039 4.039 17 H 0.114 0.886 18 N -0.362 5.362 19 C -0.179 4.179 20 C -0.012 4.012 21 C -0.563 4.563 22 H 0.072 0.928 23 C -0.142 4.142 24 N -0.532 5.532 25 Si 0.720 3.280 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.202 1.202 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.003 2.066 24.019 24.128 hybrid contribution -1.356 -0.413 -1.491 2.057 sum -2.358 1.653 22.528 22.711 Atomic orbital electron populations 1.22230 0.93938 1.02744 1.03246 1.19724 0.94491 0.97457 0.80912 0.86728 1.20082 0.92323 0.99661 0.98334 1.21065 1.01586 0.96773 0.94130 1.17623 0.88516 0.94581 0.92660 1.91525 1.70936 1.71940 1.77037 1.21008 0.91784 1.00032 1.01390 1.21026 1.01399 0.97860 0.94394 1.17632 0.87938 0.93659 0.91804 1.91610 1.70231 1.71471 1.76702 1.47871 1.56791 1.10133 1.19805 1.21958 1.01203 0.80114 1.04136 1.20960 0.76027 0.87279 0.83814 1.90620 1.56447 1.15696 1.77932 1.21492 0.93396 0.97011 0.91995 0.88583 1.58738 1.33014 1.06961 1.37521 1.22441 0.96437 1.01639 0.97374 1.19094 0.96757 0.94402 0.90929 1.21134 0.97741 1.33427 1.04002 0.92775 1.25007 0.95675 0.95498 0.98069 1.69938 1.22394 1.34895 1.25929 0.86648 0.82420 0.78211 0.80681 1.20227 1.21215 1.20210 0.91091 0.91077 0.91658 0.83204 0.83746 0.83581 0.92868 0.91232 0.89006 0.83052 0.84160 0.92627 0.92306 0.96355 0.96388 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.10 37.16 0.30 -1.20 16 2 C 0.18 2.09 2.56 -69.08 -0.18 1.91 16 3 H 0.11 1.60 6.84 -51.92 -0.35 1.24 16 4 C -0.10 -1.06 4.69 -104.56 -0.49 -1.55 16 5 C -0.12 -1.00 9.08 -39.52 -0.36 -1.36 16 6 C 0.09 0.74 7.30 -39.43 -0.29 0.45 16 7 F -0.14 -1.25 17.27 2.25 0.04 -1.21 16 8 C -0.12 -0.93 10.02 -39.52 -0.40 -1.33 16 9 C -0.13 -1.08 10.02 -39.52 -0.40 -1.48 16 10 C 0.11 1.22 7.24 -39.43 -0.29 0.93 16 11 F -0.12 -1.71 16.74 2.25 0.04 -1.68 16 12 N -0.61 -8.27 2.75 -175.27 -0.48 -8.75 16 13 C 0.07 0.79 9.16 59.84 0.55 1.34 16 14 C 0.53 8.98 6.93 -10.99 -0.08 8.91 16 15 O -0.53 -10.47 15.59 5.56 0.09 -10.38 16 16 C 0.08 1.31 2.36 -68.87 -0.16 1.15 16 17 H 0.10 1.60 7.13 -51.93 -0.37 1.23 16 18 N -0.83 -14.62 8.94 -5.66 -0.05 -14.67 16 19 C -0.14 -2.70 4.43 -26.73 -0.12 -2.81 16 20 C 0.03 0.60 4.74 -27.88 -0.13 0.47 16 21 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 22 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 23 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 24 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 25 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.52 5.56 -51.93 -0.29 0.23 16 32 H 0.15 1.06 5.96 -52.49 -0.31 0.74 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.65 6.73 -51.93 -0.35 0.30 16 37 H 0.09 1.18 4.73 -51.93 -0.25 0.93 16 38 H 0.35 6.20 7.55 -39.29 -0.30 5.90 16 39 H 0.35 6.13 8.58 -39.29 -0.34 5.79 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.08 6.54 -51.93 -0.34 0.74 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 6.87 -51.92 -0.36 0.09 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -31.49 365.95 -7.33 -38.82 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.75 Total: 8.89 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.44 Total: -7.53 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.20 Total: -48.48 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.08 Total: -2.89 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.49 -7.33 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424105708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.466 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds