Wall clock time and date at job start Tue Mar 31 2020 14:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31157 * 1 3 3 Cl 1.73600 * 120.00367 * 2 1 4 4 C 1.50699 * 120.00028 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.47123 * 94.99858 * 4 2 1 6 6 C 1.36739 * 127.14392 * 264.22281 * 5 4 2 7 7 C 1.50705 * 126.34098 * 0.05471 * 6 5 4 8 8 C 1.53005 * 109.46852 * 90.00298 * 7 6 5 9 9 C 1.52994 * 109.47193 * 64.99821 * 8 7 6 10 10 C 1.53004 * 109.46881 * 184.99986 * 8 7 6 11 11 N 1.30285 * 107.31031 * 180.02562 * 6 5 4 12 12 N 1.28529 * 110.05408 * 359.72449 * 11 6 5 13 13 C 1.31223 * 109.85986 * 0.45649 * 12 11 6 14 14 N 1.38568 * 126.47539 * 179.81775 * 13 12 11 15 15 C 1.46900 * 111.00152 * 271.70983 * 14 13 12 16 16 C 1.46910 * 110.99904 * 35.66296 * 14 13 12 17 17 H 1.08996 * 109.47025 * 299.99655 * 16 14 13 18 18 C 1.52997 * 109.46934 * 59.99580 * 16 14 13 19 19 C 1.50696 * 109.47161 * 179.97438 * 16 14 13 20 20 H 1.08003 * 120.00250 * 324.74265 * 19 16 14 21 21 C 1.37880 * 120.00041 * 144.74269 * 19 16 14 22 22 N 1.31509 * 119.99896 * 181.39992 * 21 19 16 23 23 Si 1.86801 * 119.99863 * 1.39357 * 21 19 16 24 24 H 1.48496 * 109.47466 * 272.57733 * 23 21 19 25 25 H 1.48501 * 109.47010 * 32.58190 * 23 21 19 26 26 H 1.48503 * 109.46820 * 152.57960 * 23 21 19 27 27 H 1.08000 * 120.00417 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99783 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46947 * 335.00600 * 4 2 1 30 30 H 1.08995 * 109.47649 * 215.00391 * 4 2 1 31 31 H 1.08999 * 109.46914 * 209.99591 * 7 6 5 32 32 H 1.08999 * 109.47175 * 330.00202 * 7 6 5 33 33 H 1.09001 * 109.46988 * 304.99212 * 8 7 6 34 34 H 1.08998 * 109.46894 * 179.97438 * 9 8 7 35 35 H 1.09005 * 109.47073 * 299.99981 * 9 8 7 36 36 H 1.09001 * 109.47651 * 59.99797 * 9 8 7 37 37 H 1.08997 * 109.47187 * 59.99391 * 10 8 7 38 38 H 1.09000 * 109.47080 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.46678 * 299.99416 * 10 8 7 40 40 H 1.09005 * 109.46962 * 189.73279 * 15 14 13 41 41 H 1.09000 * 109.47202 * 309.72915 * 15 14 13 42 42 H 1.09007 * 109.47281 * 69.73527 * 15 14 13 43 43 H 1.08995 * 109.47777 * 297.38834 * 18 16 14 44 44 H 1.09001 * 109.47001 * 57.39301 * 18 16 14 45 45 H 1.09004 * 109.47006 * 177.38390 * 18 16 14 46 46 H 0.97003 * 120.00221 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1797 1.5034 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.4135 -1.6684 -1.3752 6 6 1.7232 -2.5046 -2.2084 7 6 0.4454 -3.2344 -1.8830 8 6 -0.7518 -2.3610 -2.2637 9 6 -0.7750 -2.1604 -3.7803 10 6 -2.0453 -3.0473 -1.8201 11 7 2.3745 -2.5529 -3.3357 12 7 3.4183 -1.8054 -3.2741 13 6 3.4946 -1.2430 -2.0909 14 7 4.4830 -0.3762 -1.6531 15 6 5.6078 -1.1149 -1.0639 16 6 4.9394 0.4958 -2.7438 17 1 5.3425 -0.1142 -3.5521 18 6 3.7604 1.3195 -3.2655 19 6 6.0112 1.4227 -2.2308 20 1 5.9585 1.8030 -1.2213 21 6 7.0592 1.7852 -3.0502 22 7 8.0090 2.5720 -2.5938 23 14 7.1299 1.1586 -4.8086 24 1 7.8164 -0.1578 -4.8378 25 1 5.7500 1.0092 -5.3367 26 1 7.8796 2.1265 -5.6491 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.4400 -2.0853 0.4352 30 1 2.9757 -1.1987 0.5900 31 1 0.4071 -4.1679 -2.4444 32 1 0.4123 -3.4508 -0.8152 33 1 -0.6667 -1.3927 -1.7704 34 1 -1.6282 -1.5386 -4.0515 35 1 0.1465 -1.6715 -4.0963 36 1 -0.8602 -3.1287 -4.2736 37 1 -2.0287 -3.1902 -0.7397 38 1 -2.8983 -2.4253 -2.0917 39 1 -2.1305 -4.0155 -2.3135 40 1 6.2860 -0.4151 -0.5754 41 1 5.2303 -1.8271 -0.3302 42 1 6.1419 -1.6504 -1.8489 43 1 3.0049 0.6513 -3.6787 44 1 3.3282 1.8944 -2.4465 45 1 4.1082 1.9998 -4.0430 46 1 8.7465 2.8268 -3.1701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401405015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:47 Heat of formation + Delta-G solvation = 93.598436 kcal Electronic energy + Delta-G solvation = -27490.705757 eV Core-core repulsion = 23864.508671 eV Total energy + Delta-G solvation = -3626.197086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.65264 -37.40175 -37.10470 -36.39481 -35.26284 -32.71482 -32.38205 -30.54343 -29.87073 -27.41221 -27.26081 -26.70098 -25.30669 -24.40783 -21.89037 -21.46036 -20.32813 -19.94448 -19.17013 -17.25763 -16.63226 -16.48210 -15.71618 -15.51449 -14.97738 -14.81588 -14.41356 -14.33522 -14.02297 -13.59020 -13.06541 -12.75093 -12.65749 -12.47461 -12.37245 -12.32040 -12.15663 -12.11481 -11.96276 -11.52411 -11.39006 -11.18742 -11.04494 -10.95479 -10.86491 -10.72102 -10.68874 -10.50972 -10.32589 -10.05695 -9.87112 -9.76817 -9.29089 -9.23573 -8.65056 -8.58142 -7.64837 -6.12792 -4.13240 1.46192 2.08109 2.32882 2.70988 3.26129 3.31832 3.39885 3.49486 4.30478 4.35178 4.41158 4.44892 4.52608 4.60993 4.70002 4.95166 5.11862 5.17982 5.24736 5.25775 5.36903 5.48180 5.59253 5.61647 5.66736 5.75215 5.79003 5.88763 5.91793 5.96122 6.09872 6.18847 6.24044 6.29134 6.32683 6.48309 6.61075 6.65876 6.79747 6.92807 7.04919 7.28889 7.49774 7.74537 8.04131 8.56846 8.95214 9.19628 9.50441 10.98916 Molecular weight = 326.16amu Principal moments of inertia in cm(-1) A = 0.015564 B = 0.004799 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.586675 B = 5833.192883 C = 6685.470041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 Cl -0.043 7.043 4 C 0.154 3.846 5 N -0.474 5.474 6 C 0.159 3.841 7 C -0.022 4.022 8 C -0.100 4.100 9 C -0.146 4.146 10 C -0.146 4.146 11 N -0.283 5.283 12 N -0.324 5.324 13 C 0.387 3.613 14 N -0.456 5.456 15 C 0.052 3.948 16 C 0.198 3.802 17 H 0.024 0.976 18 C -0.133 4.133 19 C -0.504 4.504 20 H 0.083 0.917 21 C 0.079 3.921 22 N -0.892 5.892 23 Si 0.866 3.134 24 H -0.275 1.275 25 H -0.260 1.260 26 H -0.288 1.288 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.041 0.959 42 H 0.031 0.969 43 H 0.021 0.979 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.975 -10.215 7.615 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 Cl -0.014 7.014 4 C 0.030 3.970 5 N -0.169 5.169 6 C -0.108 4.108 7 C -0.062 4.062 8 C -0.119 4.119 9 C -0.203 4.203 10 C -0.203 4.203 11 N -0.123 5.123 12 N -0.167 5.167 13 C 0.031 3.969 14 N -0.182 5.182 15 C -0.095 4.095 16 C 0.093 3.907 17 H 0.041 0.959 18 C -0.191 4.191 19 C -0.543 4.543 20 H 0.101 0.899 21 C -0.124 4.124 22 N -0.530 5.530 23 Si 0.693 3.307 24 H -0.201 1.201 25 H -0.184 1.184 26 H -0.214 1.214 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.498 -10.062 6.495 22.037 hybrid contribution 0.221 -0.101 -0.191 0.309 sum -18.277 -10.164 6.304 21.843 Atomic orbital electron populations 1.24150 0.93877 1.03852 0.98693 1.23446 0.94102 0.89638 1.04448 1.98469 1.76968 1.29683 1.96280 1.20782 1.01886 0.93024 0.81288 1.46339 1.20032 1.37337 1.13240 1.24517 0.98859 0.98584 0.88805 1.20056 0.86628 0.97884 1.01631 1.21268 0.93542 0.99204 0.97910 1.21819 1.02218 1.01949 0.94342 1.21836 0.96720 1.00866 1.00880 1.73952 1.02973 1.17029 1.18318 1.74750 1.14500 1.10481 1.16995 1.23071 0.90867 0.95098 0.87824 1.59314 1.09249 1.15042 1.34601 1.22181 0.92217 0.97145 0.97997 1.19720 0.93902 0.90085 0.86999 0.95870 1.21947 0.97684 0.99343 1.00111 1.20779 1.04978 1.26731 1.01793 0.89918 1.24914 0.94859 0.94661 0.97995 1.69873 1.11213 1.35404 1.36486 0.87014 0.79149 0.78897 0.85628 1.20088 1.18447 1.21377 0.85981 0.86512 0.87587 0.87043 0.88556 0.90614 0.90638 0.93082 0.91781 0.92455 0.92741 0.92338 0.92329 0.88384 0.94019 0.95071 0.96012 0.92759 0.93102 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 12.53 28.97 0.36 -1.13 16 2 C -0.09 -1.04 6.08 -36.07 -0.22 -1.26 16 3 Cl -0.04 -0.65 28.02 -51.86 -1.45 -2.10 16 4 C 0.15 1.75 6.31 -5.20 -0.03 1.72 16 5 N -0.47 -7.21 2.79 -115.37 -0.32 -7.53 16 6 C 0.16 2.35 6.53 -154.02 -1.01 1.35 16 7 C -0.02 -0.22 5.05 -27.88 -0.14 -0.36 16 8 C -0.10 -0.89 2.83 -90.62 -0.26 -1.15 16 9 C -0.15 -1.59 9.00 37.15 0.33 -1.26 16 10 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 11 N -0.28 -5.36 11.48 32.99 0.38 -4.98 16 12 N -0.32 -7.03 11.02 30.31 0.33 -6.70 16 13 C 0.39 7.53 5.55 -318.88 -1.77 5.76 16 14 N -0.46 -9.42 4.66 -176.08 -0.82 -10.24 16 15 C 0.05 1.00 9.11 60.06 0.55 1.55 16 16 C 0.20 4.77 1.37 -68.86 -0.09 4.67 16 17 H 0.02 0.61 5.26 -51.93 -0.27 0.34 16 18 C -0.13 -3.08 8.89 37.16 0.33 -2.75 16 19 C -0.50 -13.59 7.57 -34.44 -0.26 -13.85 16 20 H 0.08 2.41 8.05 -52.48 -0.42 1.99 16 21 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 22 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 23 Si 0.87 21.95 26.59 -169.99 -4.52 17.43 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.26 -6.59 6.59 56.52 0.37 -6.22 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H 0.12 0.81 6.63 -52.49 -0.35 0.46 16 28 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.11 0.81 6.94 -51.93 -0.36 0.44 16 30 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.54 7.18 -51.93 -0.37 0.17 16 33 H 0.08 0.71 4.98 -51.93 -0.26 0.45 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.93 6.84 -51.93 -0.36 0.57 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 2.00 7.20 -51.93 -0.37 1.62 16 41 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 42 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 43 H 0.02 0.49 6.90 -51.93 -0.36 0.13 16 44 H 0.05 1.21 7.15 -51.93 -0.37 0.84 16 45 H 0.05 1.21 7.53 -51.93 -0.39 0.81 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -32.34 379.01 -9.15 -41.49 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -7.27 Total: -2.28 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.96 Total: -5.15 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.34 Total: -55.10 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.52 Total: 17.43 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.45 Total: -2.10 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.34 -9.15 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401405015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.090 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds