Wall clock time and date at job start Tue Mar 31 2020 14:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31157 * 1 3 3 Cl 1.73600 * 120.00367 * 2 1 4 4 C 1.50699 * 120.00028 * 179.97438 * 2 1 3 5 5 N 1.46498 * 109.47123 * 94.99858 * 4 2 1 6 6 C 1.36739 * 127.14392 * 264.22281 * 5 4 2 7 7 C 1.50705 * 126.34098 * 0.05471 * 6 5 4 8 8 C 1.53005 * 109.46852 * 90.00298 * 7 6 5 9 9 C 1.52994 * 109.47193 * 64.99821 * 8 7 6 10 10 C 1.53004 * 109.46881 * 184.99986 * 8 7 6 11 11 N 1.30285 * 107.31031 * 180.02562 * 6 5 4 12 12 N 1.28529 * 110.05408 * 359.72449 * 11 6 5 13 13 C 1.31223 * 109.85986 * 0.45649 * 12 11 6 14 14 N 1.38568 * 126.47539 * 179.81775 * 13 12 11 15 15 C 1.46900 * 111.00152 * 271.70983 * 14 13 12 16 16 C 1.46910 * 110.99904 * 35.66296 * 14 13 12 17 17 H 1.08996 * 109.47025 * 299.99655 * 16 14 13 18 18 C 1.52997 * 109.46934 * 59.99580 * 16 14 13 19 19 C 1.50696 * 109.47161 * 179.97438 * 16 14 13 20 20 H 1.08003 * 120.00250 * 324.74265 * 19 16 14 21 21 C 1.37880 * 120.00041 * 144.74269 * 19 16 14 22 22 N 1.31509 * 119.99896 * 181.39992 * 21 19 16 23 23 Si 1.86801 * 119.99863 * 1.39357 * 21 19 16 24 24 H 1.48496 * 109.47466 * 272.57733 * 23 21 19 25 25 H 1.48501 * 109.47010 * 32.58190 * 23 21 19 26 26 H 1.48503 * 109.46820 * 152.57960 * 23 21 19 27 27 H 1.08000 * 120.00417 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.99783 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.46947 * 335.00600 * 4 2 1 30 30 H 1.08995 * 109.47649 * 215.00391 * 4 2 1 31 31 H 1.08999 * 109.46914 * 209.99591 * 7 6 5 32 32 H 1.08999 * 109.47175 * 330.00202 * 7 6 5 33 33 H 1.09001 * 109.46988 * 304.99212 * 8 7 6 34 34 H 1.08998 * 109.46894 * 179.97438 * 9 8 7 35 35 H 1.09005 * 109.47073 * 299.99981 * 9 8 7 36 36 H 1.09001 * 109.47651 * 59.99797 * 9 8 7 37 37 H 1.08997 * 109.47187 * 59.99391 * 10 8 7 38 38 H 1.09000 * 109.47080 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.46678 * 299.99416 * 10 8 7 40 40 H 1.09005 * 109.46962 * 189.73279 * 15 14 13 41 41 H 1.09000 * 109.47202 * 309.72915 * 15 14 13 42 42 H 1.09007 * 109.47281 * 69.73527 * 15 14 13 43 43 H 1.08995 * 109.47777 * 297.38834 * 18 16 14 44 44 H 1.09001 * 109.47001 * 57.39301 * 18 16 14 45 45 H 1.09004 * 109.47006 * 177.38390 * 18 16 14 46 46 H 0.97003 * 120.00221 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1797 1.5034 0.0000 4 6 2.0651 -1.3051 0.0006 5 7 2.4135 -1.6684 -1.3752 6 6 1.7232 -2.5046 -2.2084 7 6 0.4454 -3.2344 -1.8830 8 6 -0.7518 -2.3610 -2.2637 9 6 -0.7750 -2.1604 -3.7803 10 6 -2.0453 -3.0473 -1.8201 11 7 2.3745 -2.5529 -3.3357 12 7 3.4183 -1.8054 -3.2741 13 6 3.4946 -1.2430 -2.0909 14 7 4.4830 -0.3762 -1.6531 15 6 5.6078 -1.1149 -1.0639 16 6 4.9394 0.4958 -2.7438 17 1 5.3425 -0.1142 -3.5521 18 6 3.7604 1.3195 -3.2655 19 6 6.0112 1.4227 -2.2308 20 1 5.9585 1.8030 -1.2213 21 6 7.0592 1.7852 -3.0502 22 7 8.0090 2.5720 -2.5938 23 14 7.1299 1.1586 -4.8086 24 1 7.8164 -0.1578 -4.8378 25 1 5.7500 1.0092 -5.3367 26 1 7.8796 2.1265 -5.6491 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.4400 -2.0853 0.4352 30 1 2.9757 -1.1987 0.5900 31 1 0.4071 -4.1679 -2.4444 32 1 0.4123 -3.4508 -0.8152 33 1 -0.6667 -1.3927 -1.7704 34 1 -1.6282 -1.5386 -4.0515 35 1 0.1465 -1.6715 -4.0963 36 1 -0.8602 -3.1287 -4.2736 37 1 -2.0287 -3.1902 -0.7397 38 1 -2.8983 -2.4253 -2.0917 39 1 -2.1305 -4.0155 -2.3135 40 1 6.2860 -0.4151 -0.5754 41 1 5.2303 -1.8271 -0.3302 42 1 6.1419 -1.6504 -1.8489 43 1 3.0049 0.6513 -3.6787 44 1 3.3282 1.8944 -2.4465 45 1 4.1082 1.9998 -4.0430 46 1 8.7465 2.8268 -3.1701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001401405015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:46 Heat of formation + Delta-G solvation = 75.008964 kcal Electronic energy + Delta-G solvation = -27491.511857 eV Core-core repulsion = 23864.508671 eV Total energy + Delta-G solvation = -3627.003186 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.96371 -38.94876 -38.10893 -37.29943 -36.30504 -34.73018 -33.44363 -32.22543 -31.26542 -28.55997 -27.97774 -27.70947 -27.11653 -26.06791 -23.47814 -22.48996 -21.43743 -20.84825 -20.58722 -19.17683 -17.96462 -17.66018 -17.09010 -16.53386 -16.47246 -16.04900 -15.70204 -15.37990 -15.19182 -14.78304 -14.71184 -14.51256 -13.99080 -13.57842 -13.45380 -13.44003 -13.16385 -13.02912 -13.01477 -12.97524 -12.72414 -12.63550 -12.60512 -12.33223 -12.16836 -12.00679 -11.86907 -11.80348 -11.76344 -11.52884 -11.44671 -11.24843 -11.02981 -10.79617 -10.18173 -10.08976 -9.26717 -8.33459 -6.35494 0.57053 0.88413 1.26182 1.31237 1.43368 1.44230 1.56807 1.90004 2.28593 2.88020 3.13192 3.41113 3.50692 3.67747 3.88127 4.00053 4.06721 4.21733 4.30760 4.35320 4.47603 4.55555 4.59414 4.64186 4.68905 4.70352 4.75131 4.85948 4.92050 4.96607 4.98600 5.05099 5.06216 5.08341 5.13529 5.19614 5.25990 5.31655 5.34447 5.46605 5.51898 5.55280 5.80155 5.89166 6.23873 6.62766 6.72869 7.30321 7.84969 8.81859 Molecular weight = 326.16amu Principal moments of inertia in cm(-1) A = 0.015564 B = 0.004799 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.586675 B = 5833.192883 C = 6685.470041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.120 4.120 3 Cl -0.089 7.089 4 C 0.147 3.853 5 N -0.466 5.466 6 C 0.189 3.811 7 C -0.025 4.025 8 C -0.093 4.093 9 C -0.147 4.147 10 C -0.140 4.140 11 N -0.326 5.326 12 N -0.369 5.369 13 C 0.368 3.632 14 N -0.449 5.449 15 C 0.056 3.944 16 C 0.208 3.792 17 H 0.002 0.998 18 C -0.119 4.119 19 C -0.492 4.492 20 H 0.054 0.946 21 C 0.036 3.964 22 N -0.931 5.931 23 Si 0.916 3.084 24 H -0.274 1.274 25 H -0.263 1.263 26 H -0.279 1.279 27 H 0.159 0.841 28 H 0.122 0.878 29 H 0.157 0.843 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.022 0.978 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.013 0.987 43 H 0.021 0.979 44 H 0.059 0.941 45 H 0.039 0.961 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.576 -12.510 9.018 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.147 4.147 3 Cl -0.061 7.061 4 C 0.026 3.974 5 N -0.159 5.159 6 C -0.079 4.079 7 C -0.064 4.064 8 C -0.112 4.112 9 C -0.204 4.204 10 C -0.197 4.197 11 N -0.164 5.164 12 N -0.212 5.212 13 C 0.010 3.990 14 N -0.175 5.175 15 C -0.091 4.091 16 C 0.102 3.898 17 H 0.020 0.980 18 C -0.178 4.178 19 C -0.530 4.530 20 H 0.072 0.928 21 C -0.164 4.164 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.200 1.200 25 H -0.187 1.187 26 H -0.205 1.205 27 H 0.176 0.824 28 H 0.140 0.860 29 H 0.175 0.825 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.032 0.968 43 H 0.040 0.960 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.125 -12.369 7.918 26.555 hybrid contribution 1.106 0.510 -0.548 1.336 sum -21.019 -11.859 7.370 25.233 Atomic orbital electron populations 1.24547 0.92784 1.05786 0.93764 1.23514 0.94712 0.87992 1.08528 1.98458 1.78187 1.32658 1.96761 1.21203 1.02785 0.94435 0.79005 1.46498 1.18465 1.36495 1.14489 1.25507 0.98847 0.96382 0.87189 1.20450 0.83976 0.97536 1.04437 1.21234 0.94623 0.99305 0.96044 1.21823 1.00326 1.01821 0.96444 1.21796 0.94768 1.00695 1.02421 1.73872 1.03452 1.18299 1.20785 1.74616 1.16278 1.11748 1.18578 1.22759 0.91785 0.95976 0.88434 1.59066 1.09758 1.15672 1.32953 1.22152 0.91875 0.97100 0.97999 1.19405 0.93270 0.89918 0.87240 0.98040 1.21778 0.97245 0.98898 0.99845 1.20816 1.05448 1.26491 1.00280 0.92796 1.25471 0.94870 0.95041 1.00990 1.69965 1.12178 1.37145 1.37814 0.86215 0.78891 0.78490 0.82206 1.19967 1.18726 1.20510 0.82400 0.86008 0.82511 0.87680 0.87792 0.86405 0.90818 0.92292 0.95921 0.92108 0.90318 0.91984 0.91949 0.90094 0.90447 0.96806 0.96002 0.92170 0.94212 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 12.53 67.62 0.85 -0.89 16 2 C -0.12 -2.46 6.08 25.49 0.16 -2.31 16 3 Cl -0.09 -2.65 28.02 -2.72 -0.08 -2.73 16 4 C 0.15 2.82 6.31 85.63 0.54 3.36 16 5 N -0.47 -13.06 2.79 -518.92 -1.45 -14.51 16 6 C 0.19 5.08 6.53 137.64 0.90 5.98 16 7 C -0.02 -0.36 5.05 29.85 0.15 -0.21 16 8 C -0.09 -1.23 2.83 -10.79 -0.03 -1.26 16 9 C -0.15 -2.89 9.00 71.98 0.65 -2.24 16 10 C -0.14 -0.97 9.19 71.98 0.66 -0.31 16 11 N -0.33 -12.14 11.48 -49.54 -0.57 -12.71 16 12 N -0.37 -16.15 11.02 -58.01 -0.64 -16.79 16 13 C 0.37 14.20 5.55 260.11 1.44 15.64 16 14 N -0.45 -18.82 4.66 -710.98 -3.31 -22.13 16 15 C 0.06 2.21 9.11 127.69 1.16 3.37 16 16 C 0.21 10.31 1.37 44.17 0.06 10.37 16 17 H 0.00 0.10 5.26 -2.39 -0.01 0.09 16 18 C -0.12 -5.67 8.89 71.98 0.64 -5.03 16 19 C -0.49 -27.47 7.57 25.60 0.19 -27.27 16 20 H 0.05 3.29 8.05 -2.91 -0.02 3.27 16 21 C 0.04 2.08 5.47 84.66 0.46 2.54 16 22 N -0.93 -56.80 13.96 21.45 0.30 -56.50 16 23 Si 0.92 46.53 26.59 68.60 1.82 48.36 16 24 H -0.27 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.26 -13.35 6.59 99.48 0.66 -12.70 16 26 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 27 H 0.16 0.97 6.63 -2.91 -0.02 0.96 16 28 H 0.12 1.57 8.06 -2.91 -0.02 1.55 16 29 H 0.16 1.36 6.94 -2.38 -0.02 1.34 16 30 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.12 0.81 7.18 -2.39 -0.02 0.79 16 33 H 0.07 1.01 4.98 -2.39 -0.01 1.00 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.02 0.62 6.84 -2.38 -0.02 0.61 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.08 3.43 7.20 -2.38 -0.02 3.41 16 41 H 0.08 2.44 8.06 -2.39 -0.02 2.42 16 42 H 0.01 0.57 8.12 -2.38 -0.02 0.55 16 43 H 0.02 1.00 6.90 -2.39 -0.02 0.99 16 44 H 0.06 2.75 7.15 -2.39 -0.02 2.73 16 45 H 0.04 1.92 7.53 -2.38 -0.02 1.90 16 46 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -75.85 379.01 4.83 -71.02 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 0.91 Total: 4.26 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 7.84 Total: 1.74 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -5.67 Total: -122.64 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.82 Total: 48.36 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -0.08 Total: -2.73 kcal Total: -75.85 4.83 -71.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401405015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.029 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds