Wall clock time and date at job start Tue Mar 31 2020 14:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46903 * 76.63869 * 3 2 1 5 5 C 1.36942 * 119.99869 * 263.97991 * 4 3 2 6 6 H 1.08004 * 119.99823 * 201.43766 * 5 4 3 7 7 C 1.38806 * 120.00079 * 21.44156 * 5 4 3 8 8 N 1.31623 * 119.99772 * 10.37261 * 7 5 4 9 9 Si 1.86803 * 120.00135 * 190.37181 * 7 5 4 10 10 H 1.48496 * 109.46855 * 84.98098 * 9 7 5 11 11 H 1.48498 * 109.47027 * 204.97816 * 9 7 5 12 12 H 1.48502 * 109.47056 * 324.97912 * 9 7 5 13 13 C 1.46506 * 120.00265 * 83.98610 * 4 3 2 14 14 C 1.50696 * 109.46885 * 269.99785 * 13 4 3 15 15 O 1.21288 * 120.00015 * 359.97438 * 14 13 4 16 16 N 1.34777 * 120.00024 * 180.02562 * 14 13 4 17 17 C 1.46500 * 120.00141 * 180.02562 * 16 14 13 18 18 H 1.09003 * 109.47155 * 324.99760 * 17 16 14 19 19 C 1.50700 * 109.47219 * 204.99724 * 17 16 14 20 20 C 1.38231 * 120.00090 * 139.99705 * 19 17 16 21 21 C 1.38236 * 119.99911 * 180.27329 * 20 19 17 22 22 C 1.38236 * 119.99809 * 359.49633 * 21 20 19 23 23 C 1.50700 * 119.99940 * 180.23531 * 22 21 20 24 24 C 1.38231 * 120.00088 * 0.50368 * 22 21 20 25 25 C 1.38232 * 119.99525 * 320.01788 * 19 17 16 26 26 C 1.53007 * 109.47363 * 84.99144 * 17 16 14 27 27 C 1.53000 * 117.49613 * 8.62587 * 26 17 16 28 28 C 1.52993 * 117.49960 * 300.00244 * 26 17 16 29 29 H 4.40635 * 5.51502 * 180.02562 * 4 1 2 30 30 H 1.08994 * 109.47507 * 316.63641 * 3 2 1 31 31 H 1.08999 * 109.46679 * 196.63620 * 3 2 1 32 32 H 0.97005 * 119.99787 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47244 * 149.99918 * 13 4 3 34 34 H 1.09002 * 109.46934 * 29.99708 * 13 4 3 35 35 H 0.96999 * 119.99832 * 359.97438 * 16 14 13 36 36 H 1.08000 * 120.00374 * 0.02562 * 20 19 17 37 37 H 1.08004 * 120.00125 * 179.72347 * 21 20 19 38 38 H 1.09003 * 109.47028 * 270.27145 * 23 22 21 39 39 H 1.08995 * 109.47259 * 30.26838 * 23 22 21 40 40 H 1.09001 * 109.47368 * 150.27163 * 23 22 21 41 41 H 1.07999 * 120.00224 * 179.72701 * 24 22 21 42 42 H 1.07997 * 120.00461 * 0.02562 * 25 19 17 43 43 H 1.08997 * 115.54686 * 154.33045 * 26 17 16 44 44 H 1.08995 * 117.49810 * 359.97438 * 27 26 17 45 45 H 1.08997 * 117.49814 * 145.01834 * 27 26 17 46 46 H 1.08995 * 117.50136 * 214.97747 * 28 26 17 47 47 H 1.09005 * 117.50299 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.3183 -1.3438 5 6 3.4804 -1.6052 -1.6590 6 1 4.1456 -1.7980 -2.4878 7 6 2.9763 -2.6619 -0.9133 8 7 2.0139 -2.4513 -0.0405 9 14 3.6638 -4.3829 -1.1485 10 1 4.8747 -4.5515 -0.3057 11 1 2.6408 -5.3832 -0.7510 12 1 4.0224 -4.5818 -2.5758 13 6 3.2528 0.7395 -2.3505 14 6 1.9613 0.8479 -3.1194 15 8 1.0335 0.1135 -2.8532 16 7 1.8376 1.7602 -4.1038 17 6 0.5819 1.8659 -4.8510 18 1 0.1422 0.8750 -4.9647 19 6 0.8549 2.4535 -6.2116 20 6 0.1968 1.9597 -7.3224 21 6 0.4514 2.4949 -8.5712 22 6 1.3564 3.5308 -8.7078 23 6 1.6301 4.1178 -10.0685 24 6 2.0145 4.0246 -7.5970 25 6 1.7637 3.4859 -6.3488 26 6 -0.3897 2.7706 -4.0902 27 6 0.1532 3.5280 -2.8768 28 6 -0.7943 2.3433 -2.6780 29 1 -1.0500 0.0002 -0.0002 30 1 3.0097 -0.7462 0.7056 31 1 3.0088 0.9855 0.2942 32 1 1.6618 -3.1897 0.4809 33 1 4.0649 0.4990 -3.0365 34 1 3.4627 1.6886 -1.8573 35 1 2.5797 2.3472 -4.3170 36 1 -0.5133 1.1531 -7.2152 37 1 -0.0594 2.1061 -9.4398 38 1 2.4503 3.5761 -10.5397 39 1 0.7365 4.0338 -10.6869 40 1 1.9016 5.1682 -9.9632 41 1 2.7248 4.8310 -7.7042 42 1 2.2784 3.8712 -5.4810 43 1 -1.1425 3.2699 -4.7001 44 1 1.2024 3.3815 -2.6202 45 1 -0.2423 4.5260 -2.6882 46 1 -1.8132 2.5619 -2.3586 47 1 -0.3688 1.4174 -2.2909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491338708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:28 Heat of formation + Delta-G solvation = 108.934337 kcal Electronic energy + Delta-G solvation = -27950.228240 eV Core-core repulsion = 24294.836268 eV Total energy + Delta-G solvation = -3655.391973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.16424 -38.81212 -36.83305 -35.36952 -34.00747 -32.38759 -31.36367 -31.08323 -30.97979 -28.76405 -26.85436 -25.83587 -24.87296 -22.95406 -21.99139 -21.92376 -21.22535 -20.01548 -19.29811 -17.40715 -17.02186 -16.44840 -15.96867 -15.74451 -15.41849 -15.13399 -14.88704 -14.56959 -14.07086 -13.94979 -13.57234 -13.48500 -13.42920 -13.08087 -12.66600 -12.61681 -12.35509 -12.28958 -12.09049 -11.49998 -11.35961 -11.32291 -11.25113 -11.10244 -11.02028 -10.80138 -10.64136 -10.21351 -10.06560 -9.99611 -9.67909 -9.04688 -9.00007 -8.80245 -8.57763 -8.51821 -8.34960 -8.16587 -6.89885 -5.69136 -3.19398 1.22199 1.32240 3.39664 3.46540 3.48277 3.56450 3.64730 3.79858 4.21008 4.39605 4.59579 4.61195 4.70302 4.73032 4.79035 4.92766 5.11782 5.18083 5.32347 5.36327 5.37893 5.43568 5.46606 5.57130 5.58903 5.66351 5.69712 5.74097 5.93620 5.97576 5.99288 6.04878 6.09688 6.16707 6.22843 6.29070 6.34259 6.43194 6.47758 6.57002 6.81246 6.89712 6.91720 7.09362 7.38061 7.65016 7.76858 8.15120 8.37515 9.14289 9.23548 9.51184 9.79543 10.24295 11.32236 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.003449 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.393507 B = 8116.485166 C = 9070.792057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.086 4.086 3 C 0.271 3.729 4 N -0.558 5.558 5 C -0.264 4.264 6 H 0.073 0.927 7 C 0.011 3.989 8 N -0.884 5.884 9 Si 0.907 3.093 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.281 1.281 13 C 0.128 3.872 14 C 0.468 3.532 15 O -0.488 6.488 16 N -0.743 5.743 17 C 0.216 3.784 18 H 0.092 0.908 19 C -0.081 4.081 20 C -0.106 4.106 21 C -0.119 4.119 22 C -0.094 4.094 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.105 4.105 26 C -0.166 4.166 27 C -0.173 4.173 28 C -0.181 4.181 29 H 0.181 0.819 30 H 0.103 0.897 31 H 0.029 0.971 32 H 0.254 0.746 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.389 0.611 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 15.496 -13.627 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.089 4.089 3 C 0.146 3.854 4 N -0.276 5.276 5 C -0.393 4.393 6 H 0.091 0.909 7 C -0.189 4.189 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.207 1.207 13 C -0.004 4.004 14 C 0.252 3.748 15 O -0.358 6.358 16 N -0.400 5.400 17 C 0.111 3.889 18 H 0.110 0.890 19 C -0.081 4.081 20 C -0.125 4.125 21 C -0.137 4.137 22 C -0.094 4.094 23 C -0.170 4.170 24 C -0.137 4.137 25 C -0.123 4.123 26 C -0.185 4.185 27 C -0.210 4.210 28 C -0.218 4.218 29 H 0.199 0.801 30 H 0.121 0.879 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.223 0.777 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.184 14.727 -13.241 19.839 hybrid contribution -0.094 -0.724 -0.519 0.896 sum -1.278 14.002 -13.760 19.673 Atomic orbital electron populations 1.23858 0.95009 1.08284 1.04215 1.23858 0.94880 0.93621 0.96493 1.17900 0.83306 0.96710 0.87459 1.44038 1.73036 1.04833 1.05687 1.19154 1.22337 0.81997 1.15791 0.90947 1.25068 0.96295 0.97880 0.99686 1.70032 1.25662 1.30372 1.26551 0.86252 0.77890 0.84386 0.77763 1.21355 1.21793 1.20705 1.21084 0.93084 0.93926 0.92337 1.23377 0.92995 0.78924 0.79466 1.90690 1.40217 1.40494 1.64439 1.46691 1.14885 1.40215 1.38171 1.19123 0.85418 0.98223 0.86183 0.88969 1.19973 0.96981 0.96409 0.94781 1.21037 0.99638 0.99784 0.91994 1.20987 0.98708 0.96791 0.97236 1.19901 0.97156 0.96736 0.95590 1.20775 1.02057 1.00611 0.93528 1.20986 1.00063 1.00458 0.92237 1.20917 0.97994 0.96123 0.97298 1.22634 1.01808 1.03259 0.90839 1.22831 1.00175 0.95944 1.02053 1.23487 0.99304 1.01361 0.97639 0.80125 0.87898 0.95336 0.93551 0.90700 0.91558 0.77687 0.85897 0.86202 0.91291 0.91722 0.91687 0.86193 0.86024 0.88316 0.88732 0.89997 0.90148 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.19 17.98 29.55 0.53 -6.66 16 2 C -0.09 -2.16 9.94 -37.12 -0.37 -2.53 16 3 C 0.27 6.48 5.44 -6.83 -0.04 6.45 16 4 N -0.56 -13.47 2.09 -177.95 -0.37 -13.84 16 5 C -0.26 -7.07 9.69 -15.06 -0.15 -7.22 16 6 H 0.07 1.90 7.84 -52.48 -0.41 1.49 16 7 C 0.01 0.29 5.11 -17.43 -0.09 0.20 16 8 N -0.88 -25.51 9.02 55.49 0.50 -25.01 16 9 Si 0.91 21.96 29.57 -169.99 -5.03 16.93 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.13 2.46 6.18 -5.19 -0.03 2.42 16 14 C 0.47 9.15 6.63 -10.99 -0.07 9.07 16 15 O -0.49 -11.83 11.45 5.55 0.06 -11.77 16 16 N -0.74 -11.10 3.57 -54.93 -0.20 -11.29 16 17 C 0.22 3.16 2.64 -69.08 -0.18 2.97 16 18 H 0.09 1.61 7.44 -51.93 -0.39 1.22 16 19 C -0.08 -1.00 4.93 -104.63 -0.52 -1.52 16 20 C -0.11 -1.25 9.67 -39.58 -0.38 -1.63 16 21 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 22 C -0.09 -0.91 5.88 -104.63 -0.62 -1.53 16 23 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 24 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 25 C -0.10 -1.14 9.06 -39.58 -0.36 -1.50 16 26 C -0.17 -2.36 5.69 -90.62 -0.52 -2.88 16 27 C -0.17 -2.44 9.73 -26.73 -0.26 -2.70 16 28 C -0.18 -3.01 9.82 -26.73 -0.26 -3.27 16 29 H 0.18 3.93 7.80 -54.09 -0.42 3.51 16 30 H 0.10 2.68 6.36 -51.93 -0.33 2.35 16 31 H 0.03 0.59 7.98 -51.93 -0.41 0.18 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 34 H 0.07 1.08 7.95 -51.93 -0.41 0.67 16 35 H 0.39 4.73 6.87 -40.82 -0.28 4.45 16 36 H 0.12 1.36 8.04 -52.49 -0.42 0.94 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 40 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.12 1.16 6.91 -52.49 -0.36 0.80 16 43 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 44 H 0.09 1.38 6.66 -51.93 -0.35 1.03 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.13 2.76 4.21 -51.93 -0.22 2.54 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -32.46 384.07 -9.89 -42.35 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.93 Total: 10.78 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -3.72 Total: -13.93 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.07 Total: -50.14 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.06 Total: -11.77 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.46 -9.89 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491338708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.282 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds