Wall clock time and date at job start Tue Mar 31 2020 14:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50696 * 120.00337 * 2 1 4 4 C 1.31007 * 119.99480 * 180.02562 * 2 1 3 5 5 C 1.50700 * 120.00084 * 5.21362 * 4 2 1 6 6 N 1.46897 * 109.47278 * 126.31057 * 5 4 2 7 7 C 1.46902 * 111.00052 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47201 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47177 * 295.00079 * 8 7 6 10 10 C 1.53002 * 109.46962 * 174.99957 * 8 7 6 11 11 C 1.53002 * 117.49566 * 130.55291 * 10 8 7 12 12 C 1.52998 * 117.49633 * 61.89492 * 10 8 7 13 13 N 1.46496 * 109.46753 * 55.00323 * 8 7 6 14 14 C 1.46503 * 120.00388 * 64.10418 * 13 8 7 15 15 C 1.34781 * 120.00095 * 244.10276 * 13 8 7 16 16 O 1.21277 * 119.99650 * 359.97438 * 15 13 8 17 17 C 1.50701 * 120.00170 * 180.02562 * 15 13 8 18 18 S 1.81005 * 109.46918 * 180.02562 * 17 15 13 19 19 C 1.76194 * 99.99631 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00398 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99852 * 179.97438 * 19 18 17 22 22 N 1.31630 * 119.99804 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00139 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47209 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47439 * 119.99747 * 23 21 19 26 26 H 1.48499 * 109.47451 * 240.00314 * 23 21 19 27 27 H 1.08999 * 109.46966 * 240.05144 * 1 2 3 28 28 H 1.09003 * 109.46252 * 0.04652 * 1 2 3 29 29 H 1.08992 * 109.47425 * 120.03980 * 1 2 3 30 30 H 1.09004 * 109.47227 * 239.99879 * 3 2 1 31 31 H 1.08993 * 109.47078 * 0.02562 * 3 2 1 32 32 H 1.09006 * 109.46573 * 120.00078 * 3 2 1 33 33 H 1.07994 * 119.99838 * 185.21172 * 4 2 1 34 34 H 1.09000 * 109.47009 * 6.30581 * 5 4 2 35 35 H 1.08998 * 109.46957 * 246.31494 * 5 4 2 36 36 H 1.00893 * 111.00306 * 303.95404 * 6 5 4 37 37 H 1.08998 * 109.47156 * 300.00331 * 7 6 5 38 38 H 1.09007 * 109.46918 * 60.00286 * 7 6 5 39 39 H 1.08996 * 115.55330 * 276.22118 * 10 8 7 40 40 H 1.08997 * 117.49944 * 0.02562 * 11 10 8 41 41 H 1.09001 * 117.49677 * 145.01973 * 11 10 8 42 42 H 1.08999 * 117.49955 * 214.97020 * 12 10 8 43 43 H 1.08997 * 117.50084 * 359.97438 * 12 10 8 44 44 H 1.08999 * 109.47171 * 89.38274 * 14 13 8 45 45 H 1.08997 * 109.47448 * 209.38606 * 14 13 8 46 46 H 1.08997 * 109.47077 * 329.38805 * 14 13 8 47 47 H 1.08999 * 109.46957 * 299.99440 * 17 15 13 48 48 H 1.08997 * 109.47113 * 60.00252 * 17 15 13 49 49 H 0.97003 * 119.99768 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1620 -1.1346 -0.0005 5 6 1.4130 -2.4369 -0.1197 6 7 1.9663 -3.2199 -1.2327 7 6 1.2594 -4.4993 -1.3788 8 6 1.8619 -5.2845 -2.5456 9 1 1.6814 -4.7474 -3.4767 10 6 1.2110 -6.6672 -2.6200 11 6 0.6852 -7.1281 -3.9809 12 6 -0.2961 -6.7255 -2.8772 13 7 3.3046 -5.4344 -2.3400 14 6 3.8059 -6.2038 -1.1985 15 6 4.1708 -4.8645 -3.2010 16 8 3.7559 -4.2279 -4.1462 17 6 5.6549 -5.0191 -2.9898 18 16 6.5452 -4.1460 -4.3018 19 6 8.2064 -4.4826 -3.8205 20 1 8.4039 -5.0750 -2.9394 21 6 9.2613 -3.9863 -4.5739 22 7 9.0206 -3.2638 -5.6476 23 14 11.0225 -4.3437 -4.0641 24 1 11.0227 -5.1716 -2.8313 25 1 11.7137 -5.0790 -5.1536 26 1 11.7313 -3.0653 -3.8025 27 1 -0.3633 -0.5130 0.8904 28 1 -0.3632 1.0277 -0.0008 29 1 -0.3634 -0.5144 -0.8895 30 1 2.8873 1.3627 -0.8900 31 1 1.5524 2.1335 0.0005 32 1 2.8873 1.3626 0.8901 33 1 3.2386 -1.1367 0.0844 34 1 0.3586 -2.2338 -0.3070 35 1 1.5152 -3.0009 0.8074 36 1 1.9421 -2.6928 -2.0927 37 1 1.3609 -5.0774 -0.4604 38 1 0.2038 -4.3109 -1.5748 39 1 1.6391 -7.4243 -1.9631 40 1 0.8035 -6.4466 -4.8232 41 1 0.7672 -8.1886 -4.2191 42 1 -0.8594 -7.5213 -2.3900 43 1 -0.8239 -5.7789 -2.9931 44 1 3.9127 -7.2502 -1.4844 45 1 4.7750 -5.8101 -0.8923 46 1 3.1028 -6.1237 -0.3694 47 1 5.9300 -4.5986 -2.0226 48 1 5.9171 -6.0768 -3.0141 49 1 9.7579 -2.9174 -6.1743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755555708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:19 Heat of formation + Delta-G solvation = 1.975006 kcal Electronic energy + Delta-G solvation = -25700.970242 eV Core-core repulsion = 22176.384116 eV Total energy + Delta-G solvation = -3524.586126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.82852 -37.79101 -37.30618 -35.30618 -34.32926 -32.37105 -30.65422 -28.83535 -27.98424 -27.28725 -26.30921 -25.40522 -23.77674 -22.77824 -22.08349 -20.45425 -19.12354 -17.95179 -17.60170 -16.89487 -16.13754 -16.05251 -15.43102 -15.13504 -14.75973 -14.70002 -14.46410 -14.24539 -14.10572 -13.65900 -13.55639 -13.38794 -12.81606 -12.77835 -12.65795 -12.53274 -12.24173 -12.13335 -12.04546 -12.00983 -11.72052 -11.65786 -11.42642 -11.22383 -11.03278 -10.95404 -10.89055 -10.72632 -10.57698 -10.15257 -9.72105 -9.18246 -9.01818 -8.85428 -8.44712 -8.28397 -8.13112 -6.41631 -6.16196 -3.85095 2.00268 3.02312 3.23758 3.25335 3.29833 3.34665 3.59452 3.78925 4.09734 4.26269 4.60151 4.72002 4.73689 4.78361 4.83308 5.03299 5.08143 5.13755 5.18863 5.21395 5.24316 5.27902 5.30610 5.34978 5.42115 5.42868 5.50633 5.58966 5.61162 5.63595 5.66211 5.71168 5.77073 5.78978 5.84559 5.86280 5.95182 5.98813 6.04580 6.15601 6.26567 6.56763 6.70566 6.79677 7.00441 7.35101 7.65402 7.74220 8.41219 8.75289 9.29347 10.91266 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008709 B = 0.003485 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.265019 B = 8033.374637 C =10446.340344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.134 4.134 3 C -0.117 4.117 4 C -0.158 4.158 5 C 0.090 3.910 6 N -0.678 5.678 7 C 0.055 3.945 8 C 0.175 3.825 9 H 0.099 0.901 10 C -0.162 4.162 11 C -0.172 4.172 12 C -0.175 4.175 13 N -0.599 5.599 14 C 0.087 3.913 15 C 0.543 3.457 16 O -0.524 6.524 17 C -0.147 4.147 18 S -0.062 6.062 19 C -0.532 4.532 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.917 3.083 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.348 0.652 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.146 -2.052 13.276 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.135 4.135 3 C -0.174 4.174 4 C -0.176 4.176 5 C -0.039 4.039 6 N -0.310 5.310 7 C -0.075 4.075 8 C 0.070 3.930 9 H 0.117 0.883 10 C -0.181 4.181 11 C -0.209 4.209 12 C -0.213 4.213 13 N -0.334 5.334 14 C -0.057 4.057 15 C 0.331 3.669 16 O -0.399 6.399 17 C -0.298 4.298 18 S 0.164 5.836 19 C -0.681 4.681 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.134 0.866 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.166 0.834 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.107 0.893 48 H 0.103 0.897 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.165 -1.277 12.112 23.557 hybrid contribution 0.887 -0.805 1.194 1.692 sum -19.278 -2.082 13.307 23.517 Atomic orbital electron populations 1.20868 0.92703 1.02105 1.01648 1.21644 0.95546 0.95292 1.01064 1.20849 0.99817 0.94338 1.02377 1.22594 1.00351 0.92845 1.01820 1.20974 0.95312 0.92431 0.95167 1.60246 1.57024 1.05011 1.08698 1.22249 0.94933 0.91210 0.99150 1.20480 0.80395 0.92982 0.99137 0.88289 1.22563 0.96010 0.98675 1.00901 1.23018 1.03294 1.02067 0.92516 1.22922 0.91707 1.03076 1.03586 1.47488 1.04688 1.53734 1.27447 1.21625 1.00422 0.95110 0.88543 1.20164 0.87874 0.77621 0.81237 1.90653 1.79131 1.39873 1.30203 1.23524 0.94268 1.05310 1.06658 1.85348 1.00078 1.67253 1.30885 1.22914 0.91374 1.38866 1.14908 0.90995 1.24980 0.99386 0.94643 0.94602 1.70035 1.32247 1.32899 1.15177 0.86141 0.82769 0.78183 0.78547 1.19632 1.20637 1.20612 0.91808 0.92199 0.91827 0.91219 0.92238 0.91715 0.86598 0.94767 0.90828 0.83368 0.90847 0.94628 0.87443 0.88414 0.88788 0.88776 0.88855 0.93364 0.90792 0.91670 0.89292 0.89653 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 8.59 36.01 0.31 -0.64 16 2 C -0.13 -1.34 6.05 -101.07 -0.61 -1.96 16 3 C -0.12 -1.08 10.05 36.00 0.36 -0.72 16 4 C -0.16 -1.75 9.41 -36.03 -0.34 -2.09 16 5 C 0.09 0.92 5.92 -4.98 -0.03 0.89 16 6 N -0.68 -8.18 6.21 -115.06 -0.71 -8.90 16 7 C 0.05 0.57 4.81 -3.82 -0.02 0.55 16 8 C 0.17 2.14 2.48 -67.93 -0.17 1.97 16 9 H 0.10 1.47 6.68 -51.93 -0.35 1.12 16 10 C -0.16 -1.63 5.15 -90.62 -0.47 -2.10 16 11 C -0.17 -1.74 10.18 -26.69 -0.27 -2.01 16 12 C -0.18 -1.46 9.82 -26.69 -0.26 -1.72 16 13 N -0.60 -8.61 2.49 -173.94 -0.43 -9.05 16 14 C 0.09 0.99 9.07 59.85 0.54 1.53 16 15 C 0.54 10.52 7.69 -10.98 -0.08 10.43 16 16 O -0.52 -11.96 15.19 5.56 0.08 -11.87 16 17 C -0.15 -3.10 4.70 36.01 0.17 -2.93 16 18 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 19 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 23 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.06 0.43 7.70 -51.93 -0.40 0.03 16 29 H 0.06 0.52 7.40 -51.93 -0.38 0.14 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.47 7.70 -51.93 -0.40 0.07 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.12 1.45 8.05 -52.49 -0.42 1.02 16 34 H 0.03 0.32 5.84 -51.93 -0.30 0.02 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.35 4.76 8.72 -39.30 -0.34 4.42 16 37 H 0.07 0.71 7.02 -51.93 -0.36 0.34 16 38 H 0.04 0.33 7.59 -51.93 -0.39 -0.06 16 39 H 0.11 1.02 7.30 -51.93 -0.38 0.64 16 40 H 0.10 1.11 8.06 -51.93 -0.42 0.69 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.74 7.78 -51.93 -0.40 0.34 16 44 H 0.05 0.50 8.06 -51.93 -0.42 0.08 16 45 H 0.07 0.89 6.42 -51.93 -0.33 0.55 16 46 H 0.06 0.61 6.75 -51.93 -0.35 0.26 16 47 H 0.09 1.78 7.40 -51.92 -0.38 1.39 16 48 H 0.09 1.69 8.11 -51.92 -0.42 1.27 16 49 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 408.94 15.07 6.16 6.16 Total: -1.00 -33.46 408.94 -10.62 -44.07 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -8.54 Total: 4.48 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -0.67 Total: -11.89 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.41 Total: -43.68 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.46 -10.62 -44.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755555708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.048 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds