Wall clock time and date at job start Tue Mar 31 2020 16:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.58582 * 2 1 4 4 C 1.53191 * 109.58339 * 239.56990 * 2 1 3 5 5 H 1.08996 * 109.50024 * 305.53108 * 4 2 1 6 6 C 1.53000 * 109.49654 * 65.59925 * 4 2 1 7 7 C 1.53046 * 109.33725 * 185.59413 * 4 2 1 8 8 C 1.53041 * 109.53707 * 61.32093 * 7 4 2 9 9 C 1.53194 * 109.33692 * 298.67997 * 8 7 4 10 10 N 1.46921 * 109.58401 * 120.28573 * 2 1 3 11 11 C 1.34778 * 120.63544 * 353.41216 * 10 2 1 12 12 O 1.21670 * 119.99662 * 1.13827 * 11 10 2 13 13 C 1.46894 * 120.00263 * 181.13255 * 11 10 2 14 14 C 1.36118 * 125.43272 * 26.30198 * 13 11 10 15 15 C 1.41704 * 107.74559 * 179.97438 * 14 13 11 16 16 C 1.40022 * 133.35378 * 180.02562 * 15 14 13 17 17 C 1.36579 * 119.83211 * 179.97438 * 16 15 14 18 18 C 1.38853 * 120.59898 * 0.02562 * 17 16 15 19 19 C 1.37837 * 120.63373 * 359.97438 * 18 17 16 20 20 C 1.39086 * 119.81656 * 359.97438 * 19 18 17 21 21 N 1.37840 * 133.16480 * 180.34360 * 20 19 18 22 22 C 1.36894 * 125.62044 * 359.94279 * 21 20 19 23 23 H 1.07996 * 120.00209 * 135.81385 * 22 21 20 24 24 C 1.39014 * 119.99850 * 315.81609 * 22 21 20 25 25 N 1.31348 * 119.99948 * 158.26121 * 24 22 21 26 26 Si 1.86799 * 119.99963 * 338.26481 * 24 22 21 27 27 H 1.48504 * 109.47270 * 95.93226 * 26 24 22 28 28 H 1.48504 * 109.46856 * 215.93108 * 26 24 22 29 29 H 1.48500 * 109.47313 * 335.92795 * 26 24 22 30 30 H 1.08996 * 109.46955 * 305.45521 * 1 2 3 31 31 H 1.09004 * 109.47165 * 65.45613 * 1 2 3 32 32 H 1.09003 * 109.47226 * 185.45560 * 1 2 3 33 33 H 1.08998 * 109.47396 * 59.99746 * 6 4 2 34 34 H 1.09007 * 109.46985 * 179.97438 * 6 4 2 35 35 H 1.08999 * 109.47200 * 299.99160 * 6 4 2 36 36 H 1.09000 * 109.43350 * 301.31195 * 7 4 2 37 37 H 1.09000 * 109.48287 * 181.35286 * 7 4 2 38 38 H 1.09000 * 109.49411 * 178.71800 * 8 7 4 39 39 H 1.09000 * 109.50102 * 58.65096 * 8 7 4 40 40 H 1.09000 * 109.58244 * 174.40874 * 9 8 7 41 41 H 1.08999 * 109.58695 * 294.69158 * 9 8 7 42 42 H 1.08000 * 126.13253 * 359.96439 * 14 13 11 43 43 H 1.08000 * 120.08110 * 0.02562 * 16 15 14 44 44 H 1.08005 * 119.69650 * 180.02562 * 17 16 15 45 45 H 1.08002 * 119.68083 * 180.02562 * 18 17 16 46 46 H 1.08004 * 120.09411 * 179.97438 * 19 18 17 47 47 H 0.97004 * 119.99931 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 1 1.6029 -1.7269 -1.2891 6 6 1.6533 0.0567 -2.4967 7 6 3.5675 -0.8502 -1.1695 8 6 3.9569 -1.6658 0.0656 9 6 3.4650 -0.9453 1.3249 10 7 2.0225 -0.6981 1.1953 11 6 1.1673 -1.1042 2.1546 12 8 -0.0272 -0.9122 2.0257 13 6 1.6774 -1.7789 3.3556 14 6 2.9249 -1.6243 3.8778 15 6 3.0156 -2.4446 5.0297 16 6 4.0358 -2.6907 5.9567 17 6 3.8199 -3.5563 6.9908 18 6 2.5961 -4.1969 7.1326 19 6 1.5766 -3.9708 6.2330 20 6 1.7724 -3.0928 5.1722 21 7 0.9649 -2.6666 4.1396 22 6 -0.3279 -3.0614 3.9233 23 1 -1.0798 -2.3303 3.6654 24 6 -0.6728 -4.4033 4.0356 25 7 -1.9221 -4.7441 4.2553 26 14 0.6405 -5.7219 3.8742 27 1 1.1141 -6.1168 5.2251 28 1 0.0702 -6.9066 3.1837 29 1 1.7810 -5.1908 3.0854 30 1 -0.3633 0.5961 0.8371 31 1 -0.3634 0.4269 -0.9348 32 1 -0.3634 -1.0230 0.0977 33 1 2.0951 1.0521 -2.4522 34 1 2.0192 -0.4636 -3.3820 35 1 0.5679 0.1428 -2.5483 36 1 4.0061 0.1452 -1.1006 37 1 3.9376 -1.3488 -2.0653 38 1 5.0412 -1.7696 0.1059 39 1 3.4987 -2.6532 0.0089 40 1 3.6518 -1.5691 2.1991 41 1 3.9922 0.0026 1.4330 42 1 3.7058 -0.9903 3.4846 43 1 4.9907 -2.1967 5.8545 44 1 4.6083 -3.7442 7.7048 45 1 2.4414 -4.8782 7.9562 46 1 0.6284 -4.4741 6.3513 47 1 -2.1628 -5.6805 4.3340 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610178708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:25 Heat of formation + Delta-G solvation = 51.675047 kcal Electronic energy + Delta-G solvation = -29102.988729 eV Core-core repulsion = 25445.113807 eV Total energy + Delta-G solvation = -3657.874922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.00740 -39.76044 -37.24956 -36.06478 -34.33733 -33.28960 -32.46319 -31.34973 -29.26110 -29.15088 -27.62956 -26.33561 -24.85424 -24.27081 -22.59076 -21.65553 -21.03929 -20.30836 -19.84185 -18.84028 -17.90350 -16.25694 -15.89451 -15.72379 -15.32953 -15.05776 -14.63110 -14.50014 -14.45680 -14.13429 -13.70931 -13.33839 -13.23779 -12.96556 -12.84287 -12.80872 -12.59769 -12.29272 -12.24564 -12.01559 -11.80563 -11.65290 -11.40703 -11.36303 -10.99629 -10.97826 -10.86600 -10.70650 -10.56682 -10.37934 -10.27375 -10.08629 -9.87673 -9.34669 -8.71579 -8.48639 -8.18981 -7.35531 -6.93557 -6.87062 -4.48894 1.62678 2.48285 2.84208 3.04101 3.10736 3.20634 3.21682 3.91299 4.00685 4.34983 4.58253 4.70810 4.78554 4.81092 4.87573 5.09268 5.24722 5.34841 5.44967 5.52468 5.54095 5.60257 5.68076 5.71317 5.73362 5.74573 5.85323 5.91452 5.97650 6.03216 6.08223 6.11743 6.17714 6.20362 6.24034 6.36316 6.41964 6.54017 6.57236 6.66388 6.76360 6.82220 7.07204 7.21258 7.26433 7.33661 7.60675 7.63076 7.86214 7.93901 8.27156 8.73018 8.87143 9.08357 10.17317 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013873 B = 0.005073 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.865247 B = 5517.997680 C = 6539.538293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.156 3.844 3 H 0.065 0.935 4 C -0.106 4.106 5 H 0.074 0.926 6 C -0.144 4.144 7 C -0.113 4.113 8 C -0.136 4.136 9 C 0.071 3.929 10 N -0.605 5.605 11 C 0.589 3.411 12 O -0.519 6.519 13 C -0.008 4.008 14 C -0.220 4.220 15 C -0.116 4.116 16 C -0.085 4.085 17 C -0.154 4.154 18 C -0.139 4.139 19 C -0.092 4.092 20 C 0.050 3.950 21 N -0.248 5.248 22 C -0.340 4.340 23 H 0.133 0.867 24 C 0.083 3.917 25 N -0.820 5.820 26 Si 0.866 3.134 27 H -0.248 1.248 28 H -0.280 1.280 29 H -0.256 1.256 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.063 0.937 42 H 0.146 0.854 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.117 0.883 47 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.713 5.200 -7.077 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.053 3.947 3 H 0.083 0.917 4 C -0.125 4.125 5 H 0.093 0.907 6 C -0.202 4.202 7 C -0.150 4.150 8 C -0.174 4.174 9 C -0.051 4.051 10 N -0.340 5.340 11 C 0.379 3.621 12 O -0.395 6.395 13 C -0.126 4.126 14 C -0.246 4.246 15 C -0.121 4.121 16 C -0.104 4.104 17 C -0.173 4.173 18 C -0.159 4.159 19 C -0.112 4.112 20 C -0.063 4.063 21 N 0.091 4.909 22 C -0.468 4.468 23 H 0.150 0.850 24 C -0.131 4.131 25 N -0.449 5.449 26 Si 0.689 3.311 27 H -0.172 1.172 28 H -0.206 1.206 29 H -0.180 1.180 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.163 0.837 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.130 0.870 46 H 0.135 0.865 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.450 5.059 -7.202 13.663 hybrid contribution 0.492 -0.807 -0.205 0.967 sum 10.942 4.253 -7.406 13.881 Atomic orbital electron populations 1.22280 0.92582 1.04469 1.00232 1.21192 0.95896 0.94297 0.83328 0.91720 1.21591 0.95938 1.00335 0.94661 0.90720 1.21824 1.01810 0.99863 0.96714 1.21582 0.95272 1.00234 0.97949 1.21934 1.00827 0.99805 0.94862 1.22726 0.80332 1.01073 1.00958 1.47718 1.07170 1.59184 1.19938 1.17197 0.85382 0.77923 0.81595 1.90840 1.15312 1.55268 1.78065 1.19895 0.91814 1.04920 0.95941 1.20709 0.95894 1.07894 1.00103 1.17965 0.94264 1.01546 0.98317 1.20118 0.97170 0.98770 0.94340 1.20352 0.97231 1.00368 0.99357 1.20552 0.93599 1.02230 0.99566 1.20202 0.99521 0.97855 0.93593 1.18415 0.92276 1.02925 0.92689 1.40208 1.08984 1.27740 1.13986 1.19635 0.81988 0.95021 1.50117 0.85007 1.25507 0.96721 0.97947 0.92965 1.69727 1.18011 1.19850 1.37291 0.86970 0.82127 0.81010 0.80950 1.17232 1.20593 1.17964 0.90830 0.94230 0.90782 0.92730 0.92686 0.92064 0.92011 0.92067 0.90960 0.91500 0.85391 0.91925 0.83698 0.87276 0.87374 0.87047 0.86517 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.47 37.16 0.28 -1.98 16 2 C 0.16 2.25 2.96 -67.60 -0.20 2.05 16 3 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.11 -1.29 2.34 -90.50 -0.21 -1.50 16 5 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 6 C -0.14 -1.42 8.97 37.16 0.33 -1.09 16 7 C -0.11 -1.19 5.17 -26.69 -0.14 -1.33 16 8 C -0.14 -1.61 6.08 -26.61 -0.16 -1.77 16 9 C 0.07 0.97 5.28 -3.71 -0.02 0.95 16 10 N -0.61 -10.17 2.97 -166.67 -0.50 -10.66 16 11 C 0.59 12.66 7.41 -12.76 -0.09 12.56 16 12 O -0.52 -12.51 10.83 5.22 0.06 -12.45 16 13 C -0.01 -0.19 6.42 -82.25 -0.53 -0.72 16 14 C -0.22 -4.36 8.47 -39.02 -0.33 -4.69 16 15 C -0.12 -2.46 6.16 -106.89 -0.66 -3.12 16 16 C -0.09 -1.53 10.06 -39.51 -0.40 -1.93 16 17 C -0.15 -2.67 9.97 -39.95 -0.40 -3.07 16 18 C -0.14 -2.65 10.02 -39.50 -0.40 -3.04 16 19 C -0.09 -2.07 7.05 -39.41 -0.28 -2.35 16 20 C 0.05 1.19 5.19 -83.83 -0.44 0.76 16 21 N -0.25 -6.33 2.37 -56.08 -0.13 -6.47 16 22 C -0.34 -9.47 9.35 -15.00 -0.14 -9.61 16 23 H 0.13 4.04 7.18 -52.49 -0.38 3.66 16 24 C 0.08 2.23 4.83 -17.47 -0.08 2.14 16 25 N -0.82 -22.50 13.95 55.50 0.77 -21.72 16 26 Si 0.87 20.75 24.68 -169.99 -4.20 16.55 16 27 H -0.25 -5.64 5.89 56.52 0.33 -5.30 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 29 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 30 H 0.07 1.34 6.74 -51.93 -0.35 0.99 16 31 H 0.04 0.53 6.39 -51.93 -0.33 0.20 16 32 H 0.07 1.43 6.74 -51.93 -0.35 1.08 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.62 6.50 -51.93 -0.34 0.28 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.13 1.93 3.45 -51.93 -0.18 1.75 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.15 2.31 5.68 -52.49 -0.30 2.01 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 44 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 45 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 46 H 0.12 2.72 6.19 -52.48 -0.32 2.40 16 47 H 0.29 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 352.73 15.07 5.32 5.32 Total: -1.00 -29.81 352.73 -9.36 -39.18 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.83 Total: 7.98 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -3.86 Total: -17.72 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.15 Total: -38.85 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.06 Total: -12.45 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.20 Total: 16.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.81 -9.36 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610178708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.851 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds