Wall clock time and date at job start Tue Mar 31 2020 14:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47338 * 2 1 4 4 N 1.46900 * 109.46985 * 120.00043 * 2 1 3 5 5 C 1.46902 * 110.99761 * 203.17671 * 4 2 1 6 6 H 1.08998 * 109.47590 * 321.23303 * 5 4 2 7 7 C 1.53003 * 109.47008 * 81.23313 * 5 4 2 8 8 C 1.53006 * 109.46963 * 201.22855 * 5 4 2 9 9 C 1.50702 * 109.46973 * 65.00288 * 8 5 4 10 10 C 1.38640 * 120.78675 * 269.71681 * 9 8 5 11 11 C 1.38215 * 119.15800 * 179.79678 * 10 9 8 12 12 N 1.31866 * 120.76454 * 0.49378 * 11 10 9 13 13 C 1.31872 * 121.72606 * 359.73378 * 12 11 10 14 14 C 1.38205 * 120.76376 * 0.02727 * 13 12 11 15 15 C 1.50702 * 109.47181 * 240.00008 * 2 1 3 16 16 C 1.38301 * 119.93134 * 100.00114 * 15 2 1 17 17 C 1.38096 * 120.06892 * 179.97438 * 16 15 2 18 18 C 1.38876 * 119.93425 * 0.27896 * 17 16 15 19 19 O 1.35750 * 120.07452 * 179.72206 * 18 17 16 20 20 C 1.34830 * 116.99397 * 354.58147 * 19 18 17 21 21 H 1.07998 * 120.00722 * 5.11108 * 20 19 18 22 22 C 1.38655 * 119.99566 * 185.11039 * 20 19 18 23 23 N 1.31561 * 120.00147 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00263 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46961 * 90.00281 * 24 22 20 26 26 H 1.48502 * 109.47221 * 210.00135 * 24 22 20 27 27 H 1.48499 * 109.46804 * 330.00449 * 24 22 20 28 28 C 1.38884 * 119.85545 * 359.42194 * 18 17 16 29 29 C 1.38094 * 119.93369 * 0.57430 * 28 18 17 30 30 H 1.08994 * 109.47439 * 184.98861 * 1 2 3 31 31 H 1.09004 * 109.47629 * 304.99255 * 1 2 3 32 32 H 1.09001 * 109.46975 * 64.99118 * 1 2 3 33 33 H 1.00900 * 110.99939 * 327.12997 * 4 2 1 34 34 H 1.09000 * 109.47040 * 184.95173 * 7 5 4 35 35 H 1.09005 * 109.46864 * 304.94547 * 7 5 4 36 36 H 1.08995 * 109.47295 * 64.95000 * 7 5 4 37 37 H 1.09004 * 109.46988 * 185.00294 * 8 5 4 38 38 H 1.09001 * 109.47178 * 304.99711 * 8 5 4 39 39 H 1.08002 * 120.42385 * 0.02562 * 10 9 8 40 40 H 1.07999 * 119.61469 * 180.20860 * 11 10 9 41 41 H 1.07996 * 119.61696 * 180.02562 * 13 12 11 42 42 H 1.08001 * 120.41827 * 179.97438 * 14 13 12 43 43 H 1.08007 * 119.96552 * 0.02562 * 16 15 2 44 44 H 1.08002 * 120.03493 * 180.02562 * 17 16 15 45 45 H 0.96999 * 120.00164 * 179.97438 * 23 22 20 46 46 H 1.07998 * 120.03107 * 180.29946 * 28 18 17 47 47 H 1.08004 * 119.96685 * 179.74176 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0195 -0.6925 1.1994 5 6 3.3837 -0.2631 1.5352 6 1 3.9594 -0.1324 0.6189 7 6 3.3281 1.0632 2.2960 8 6 4.0519 -1.3255 2.4104 9 6 4.2177 -2.5969 1.6185 10 6 3.2278 -3.5676 1.6193 11 6 3.4132 -4.7191 0.8776 12 7 4.5191 -4.9035 0.1835 13 6 5.4834 -4.0042 0.1633 14 6 5.3664 -2.8262 0.8767 15 6 2.0323 -0.7104 -1.2305 16 6 2.4585 0.0212 -2.3240 17 6 2.9199 -0.6269 -3.4528 18 6 2.9502 -2.0148 -3.4914 19 8 3.3978 -2.6548 -4.6017 20 6 3.6925 -1.8898 -5.6722 21 1 3.6479 -0.8134 -5.5955 22 6 4.0529 -2.4850 -6.8715 23 7 4.3410 -1.7386 -7.9159 24 14 4.1308 -4.3467 -7.0040 25 1 2.8071 -4.8685 -7.4290 26 1 5.1584 -4.7291 -8.0056 27 1 4.4889 -4.9224 -5.6828 28 6 2.5273 -2.7465 -2.3893 29 6 2.0670 -2.0926 -1.2634 30 1 -0.3634 -1.0237 0.0894 31 1 -0.3634 0.5893 0.8419 32 1 -0.3633 0.4345 -0.9313 33 1 1.3941 -0.5521 1.9787 34 1 4.3414 1.4260 2.4682 35 1 2.7747 1.7960 1.7088 36 1 2.8287 0.9124 3.2530 37 1 5.0299 -0.9680 2.7328 38 1 3.4300 -1.5200 3.2842 39 1 2.3216 -3.4242 2.1891 40 1 2.6454 -5.4785 0.8702 41 1 6.3747 -4.1903 -0.4173 42 1 6.1597 -2.0937 0.8565 43 1 2.4313 1.1005 -2.2948 44 1 3.2531 -0.0550 -4.3063 45 1 4.5935 -2.1550 -8.7548 46 1 2.5541 -3.8258 -2.4145 47 1 1.7341 -2.6612 -0.4076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772960708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:13 Heat of formation + Delta-G solvation = 27.234865 kcal Electronic energy + Delta-G solvation = -28125.465031 eV Core-core repulsion = 24466.530304 eV Total energy + Delta-G solvation = -3658.934728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.05987 -39.23462 -38.03303 -36.33180 -34.04361 -32.35530 -31.89292 -30.97487 -30.15805 -28.64504 -27.90032 -27.15659 -25.26557 -23.23983 -22.66054 -22.16508 -21.95984 -20.72116 -19.83509 -17.78135 -17.18117 -16.60361 -16.26601 -15.58400 -15.45235 -15.25837 -14.89043 -14.61356 -14.05575 -13.83531 -13.70528 -13.61222 -13.45829 -13.37848 -13.19586 -12.89190 -12.68072 -12.47999 -12.39501 -12.18691 -12.07838 -11.77764 -11.57784 -11.50257 -11.24183 -11.06984 -10.99461 -10.68825 -10.58874 -10.45722 -10.08802 -9.32738 -9.26901 -9.22140 -8.87381 -8.80112 -8.39620 -8.12349 -7.20280 -6.36397 -4.02506 1.39450 1.51908 2.24425 2.33837 3.26745 3.30478 3.47308 4.03213 4.08213 4.29661 4.56658 4.60260 4.71849 4.85607 4.89194 4.96357 5.09263 5.14635 5.15811 5.20239 5.29295 5.34139 5.36226 5.43157 5.46891 5.58180 5.62626 5.67321 5.72375 5.86315 5.87593 5.95146 5.96790 5.98241 6.01774 6.21385 6.23955 6.27145 6.43886 6.54542 6.70085 6.86908 6.94702 7.02001 7.14480 7.37260 7.43650 7.50901 7.72006 7.87076 8.11056 8.24910 8.99778 9.64485 10.71476 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012435 B = 0.004197 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.170665 B = 6670.001670 C = 7980.046912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.141 3.859 3 H 0.042 0.958 4 N -0.672 5.672 5 C 0.090 3.910 6 H 0.085 0.915 7 C -0.182 4.182 8 C -0.070 4.070 9 C -0.019 4.019 10 C -0.147 4.147 11 C 0.094 3.906 12 N -0.486 5.486 13 C 0.102 3.898 14 C -0.173 4.173 15 C -0.167 4.167 16 C -0.074 4.074 17 C -0.224 4.224 18 C 0.161 3.839 19 O -0.219 6.219 20 C -0.387 4.387 21 H 0.105 0.895 22 C 0.063 3.937 23 N -0.883 5.883 24 Si 0.903 3.097 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.258 1.258 28 C -0.194 4.194 29 C -0.039 4.039 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.335 0.665 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.129 0.871 45 H 0.278 0.722 46 H 0.111 0.889 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 2.743 22.982 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.032 3.968 3 H 0.060 0.940 4 N -0.303 5.303 5 C -0.020 4.020 6 H 0.103 0.897 7 C -0.241 4.241 8 C -0.108 4.108 9 C -0.027 4.027 10 C -0.167 4.167 11 C -0.063 4.063 12 N -0.195 5.195 13 C -0.055 4.055 14 C -0.193 4.193 15 C -0.168 4.168 16 C -0.093 4.093 17 C -0.244 4.244 18 C 0.109 3.891 19 O -0.124 6.124 20 C -0.463 4.463 21 H 0.122 0.878 22 C -0.139 4.139 23 N -0.521 5.521 24 Si 0.728 3.272 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.182 1.182 28 C -0.213 4.213 29 C -0.057 4.057 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.153 0.847 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.147 0.853 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.143 0.857 43 H 0.120 0.880 44 H 0.147 0.853 45 H 0.088 0.912 46 H 0.129 0.871 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.811 1.177 21.863 22.074 hybrid contribution -0.149 1.216 0.332 1.269 sum -2.960 2.393 22.195 22.519 Atomic orbital electron populations 1.21935 0.94715 1.02345 1.01469 1.20146 0.93906 0.94252 0.88527 0.94021 1.60562 1.02465 1.60683 1.06559 1.21503 0.91040 0.91265 0.98196 0.89706 1.22514 1.02426 0.98584 1.00589 1.20645 1.00816 0.92167 0.97128 1.19956 0.92942 0.94708 0.95075 1.21831 0.99251 0.94418 1.01161 1.22657 0.94762 0.96242 0.92606 1.67626 1.01530 1.32253 1.18088 1.22620 0.97204 0.89923 0.95709 1.21951 0.98856 0.99034 0.99429 1.19167 1.08811 0.93786 0.95077 1.20604 0.97633 0.98113 0.92957 1.21172 1.08836 0.94321 1.00030 1.19149 0.91616 0.90887 0.87440 1.83590 1.72930 1.36525 1.19405 1.20750 1.46648 0.92069 0.86848 0.87795 1.24446 0.95737 1.00117 0.93649 1.69650 1.44707 1.36112 1.01647 0.86213 0.78244 0.83844 0.78849 1.19932 1.20835 1.18223 1.20240 1.08484 0.99109 0.93480 1.20416 0.96303 0.93413 0.95607 0.91764 0.93439 0.91844 0.84706 0.92141 0.92482 0.92554 0.90773 0.90839 0.85315 0.83599 0.83462 0.85694 0.87950 0.85323 0.91162 0.87133 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.17 37.15 0.34 -1.20 16 2 C 0.14 1.66 2.64 -68.87 -0.18 1.47 16 3 H 0.04 0.49 6.68 -51.93 -0.35 0.14 16 4 N -0.67 -6.53 4.71 -100.95 -0.48 -7.00 16 5 C 0.09 0.85 2.41 -67.71 -0.16 0.69 16 6 H 0.08 1.06 7.60 -51.93 -0.39 0.66 16 7 C -0.18 -1.38 9.18 37.16 0.34 -1.04 16 8 C -0.07 -0.60 5.08 -27.88 -0.14 -0.74 16 9 C -0.02 -0.21 4.97 -104.32 -0.52 -0.73 16 10 C -0.15 -1.65 8.52 -39.44 -0.34 -1.99 16 11 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 12 N -0.49 -7.48 10.36 -13.25 -0.14 -7.61 16 13 C 0.10 1.45 11.18 -17.55 -0.20 1.26 16 14 C -0.17 -2.15 9.82 -39.44 -0.39 -2.54 16 15 C -0.17 -2.67 4.50 -104.57 -0.47 -3.14 16 16 C -0.07 -1.34 9.66 -39.61 -0.38 -1.73 16 17 C -0.22 -4.93 9.17 -39.40 -0.36 -5.29 16 18 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 19 O -0.22 -6.00 8.59 0.05 0.00 -6.00 16 20 C -0.39 -11.20 9.95 30.89 0.31 -10.89 16 21 H 0.10 3.06 5.44 -52.49 -0.29 2.78 16 22 C 0.06 1.82 5.49 -17.51 -0.10 1.72 16 23 N -0.88 -26.01 13.96 55.48 0.77 -25.23 16 24 Si 0.90 22.41 28.62 -169.99 -4.86 17.55 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.26 -6.51 7.11 56.52 0.40 -6.11 16 28 C -0.19 -4.04 9.99 -39.40 -0.39 -4.43 16 29 C -0.04 -0.67 9.31 -39.61 -0.37 -1.04 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.33 2.64 8.20 -39.29 -0.32 2.32 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.47 7.07 -51.93 -0.37 0.10 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.10 1.62 8.03 -52.48 -0.42 1.20 16 44 H 0.13 3.00 5.64 -52.49 -0.30 2.71 16 45 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.11 2.32 8.06 -52.49 -0.42 1.89 16 47 H 0.12 1.85 6.71 -52.48 -0.35 1.50 16 LS Contribution 387.30 15.07 5.84 5.84 Total: -1.00 -31.21 387.30 -9.32 -40.53 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.99 Total: 6.95 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -3.47 Total: -25.02 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.16 Total: -39.85 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: 0.00 Total: -6.00 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.86 Total: 17.55 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.21 -9.32 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772960708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.765 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds