Wall clock time and date at job start Tue Mar 31 2020 14:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47338 * 2 1 4 4 N 1.46900 * 109.46985 * 120.00043 * 2 1 3 5 5 C 1.46902 * 110.99761 * 203.17671 * 4 2 1 6 6 H 1.08998 * 109.47590 * 321.23303 * 5 4 2 7 7 C 1.53003 * 109.47008 * 81.23313 * 5 4 2 8 8 C 1.53006 * 109.46963 * 201.22855 * 5 4 2 9 9 C 1.50702 * 109.46973 * 65.00288 * 8 5 4 10 10 C 1.38640 * 120.78675 * 269.71681 * 9 8 5 11 11 C 1.38215 * 119.15800 * 179.79678 * 10 9 8 12 12 N 1.31866 * 120.76454 * 0.49378 * 11 10 9 13 13 C 1.31872 * 121.72606 * 359.73378 * 12 11 10 14 14 C 1.38205 * 120.76376 * 0.02727 * 13 12 11 15 15 C 1.50702 * 109.47181 * 240.00008 * 2 1 3 16 16 C 1.38301 * 119.93134 * 100.00114 * 15 2 1 17 17 C 1.38096 * 120.06892 * 179.97438 * 16 15 2 18 18 C 1.38876 * 119.93425 * 0.27896 * 17 16 15 19 19 O 1.35750 * 120.07452 * 179.72206 * 18 17 16 20 20 C 1.34830 * 116.99397 * 354.58147 * 19 18 17 21 21 H 1.07998 * 120.00722 * 5.11108 * 20 19 18 22 22 C 1.38655 * 119.99566 * 185.11039 * 20 19 18 23 23 N 1.31561 * 120.00147 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00263 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46961 * 90.00281 * 24 22 20 26 26 H 1.48502 * 109.47221 * 210.00135 * 24 22 20 27 27 H 1.48499 * 109.46804 * 330.00449 * 24 22 20 28 28 C 1.38884 * 119.85545 * 359.42194 * 18 17 16 29 29 C 1.38094 * 119.93369 * 0.57430 * 28 18 17 30 30 H 1.08994 * 109.47439 * 184.98861 * 1 2 3 31 31 H 1.09004 * 109.47629 * 304.99255 * 1 2 3 32 32 H 1.09001 * 109.46975 * 64.99118 * 1 2 3 33 33 H 1.00900 * 110.99939 * 327.12997 * 4 2 1 34 34 H 1.09000 * 109.47040 * 184.95173 * 7 5 4 35 35 H 1.09005 * 109.46864 * 304.94547 * 7 5 4 36 36 H 1.08995 * 109.47295 * 64.95000 * 7 5 4 37 37 H 1.09004 * 109.46988 * 185.00294 * 8 5 4 38 38 H 1.09001 * 109.47178 * 304.99711 * 8 5 4 39 39 H 1.08002 * 120.42385 * 0.02562 * 10 9 8 40 40 H 1.07999 * 119.61469 * 180.20860 * 11 10 9 41 41 H 1.07996 * 119.61696 * 180.02562 * 13 12 11 42 42 H 1.08001 * 120.41827 * 179.97438 * 14 13 12 43 43 H 1.08007 * 119.96552 * 0.02562 * 16 15 2 44 44 H 1.08002 * 120.03493 * 180.02562 * 17 16 15 45 45 H 0.96999 * 120.00164 * 179.97438 * 23 22 20 46 46 H 1.07998 * 120.03107 * 180.29946 * 28 18 17 47 47 H 1.08004 * 119.96685 * 179.74176 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0195 -0.6925 1.1994 5 6 3.3837 -0.2631 1.5352 6 1 3.9594 -0.1324 0.6189 7 6 3.3281 1.0632 2.2960 8 6 4.0519 -1.3255 2.4104 9 6 4.2177 -2.5969 1.6185 10 6 3.2278 -3.5676 1.6193 11 6 3.4132 -4.7191 0.8776 12 7 4.5191 -4.9035 0.1835 13 6 5.4834 -4.0042 0.1633 14 6 5.3664 -2.8262 0.8767 15 6 2.0323 -0.7104 -1.2305 16 6 2.4585 0.0212 -2.3240 17 6 2.9199 -0.6269 -3.4528 18 6 2.9502 -2.0148 -3.4914 19 8 3.3978 -2.6548 -4.6017 20 6 3.6925 -1.8898 -5.6722 21 1 3.6479 -0.8134 -5.5955 22 6 4.0529 -2.4850 -6.8715 23 7 4.3410 -1.7386 -7.9159 24 14 4.1308 -4.3467 -7.0040 25 1 2.8071 -4.8685 -7.4290 26 1 5.1584 -4.7291 -8.0056 27 1 4.4889 -4.9224 -5.6828 28 6 2.5273 -2.7465 -2.3893 29 6 2.0670 -2.0926 -1.2634 30 1 -0.3634 -1.0237 0.0894 31 1 -0.3634 0.5893 0.8419 32 1 -0.3633 0.4345 -0.9313 33 1 1.3941 -0.5521 1.9787 34 1 4.3414 1.4260 2.4682 35 1 2.7747 1.7960 1.7088 36 1 2.8287 0.9124 3.2530 37 1 5.0299 -0.9680 2.7328 38 1 3.4300 -1.5200 3.2842 39 1 2.3216 -3.4242 2.1891 40 1 2.6454 -5.4785 0.8702 41 1 6.3747 -4.1903 -0.4173 42 1 6.1597 -2.0937 0.8565 43 1 2.4313 1.1005 -2.2948 44 1 3.2531 -0.0550 -4.3063 45 1 4.5935 -2.1550 -8.7548 46 1 2.5541 -3.8258 -2.4145 47 1 1.7341 -2.6612 -0.4076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772960708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:13 Heat of formation + Delta-G solvation = 9.095494 kcal Electronic energy + Delta-G solvation = -28126.251614 eV Core-core repulsion = 24466.530304 eV Total energy + Delta-G solvation = -3659.721310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.11922 -40.77428 -39.31312 -37.70178 -35.11801 -34.40322 -32.89376 -31.97380 -31.74406 -30.01379 -28.84100 -27.88016 -27.25494 -24.21889 -23.88552 -23.62927 -23.16727 -21.51867 -21.23654 -19.73811 -19.07251 -17.50878 -17.22793 -16.80147 -16.66935 -16.35526 -16.16166 -15.75239 -15.63120 -15.51446 -15.37610 -14.77382 -14.50416 -14.40088 -14.28922 -14.10523 -14.00449 -13.94984 -13.70691 -13.49891 -13.04977 -13.03377 -12.64597 -12.57218 -12.45832 -12.30824 -12.13662 -12.01158 -11.93771 -11.77182 -11.71069 -11.26575 -10.89885 -10.22430 -10.21115 -9.85205 -9.74141 -9.21017 -8.91928 -8.51873 -6.23200 0.42548 0.57879 0.61578 0.71362 1.27312 1.31260 1.48865 2.25894 2.76520 3.06387 3.08806 3.17555 3.30513 3.75450 3.84857 3.97424 4.05242 4.09905 4.23490 4.24829 4.36245 4.40244 4.43857 4.47910 4.51434 4.53954 4.63254 4.75902 4.76320 4.84025 4.92891 4.96681 5.02711 5.06159 5.08768 5.12473 5.20365 5.29300 5.30965 5.36455 5.42497 5.44859 5.63203 5.63755 5.79237 5.81866 5.93219 6.02830 6.26542 6.30250 6.76210 6.83448 7.25973 7.61008 8.60071 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012435 B = 0.004197 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.170665 B = 6670.001670 C = 7980.046912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.145 3.855 3 H 0.052 0.948 4 N -0.672 5.672 5 C 0.094 3.906 6 H 0.051 0.949 7 C -0.175 4.175 8 C -0.064 4.064 9 C -0.019 4.019 10 C -0.140 4.140 11 C 0.077 3.923 12 N -0.523 5.523 13 C 0.074 3.926 14 C -0.182 4.182 15 C -0.135 4.135 16 C -0.076 4.076 17 C -0.238 4.238 18 C 0.118 3.882 19 O -0.251 6.251 20 C -0.397 4.397 21 H 0.080 0.920 22 C 0.013 3.987 23 N -0.923 5.923 24 Si 0.966 3.034 25 H -0.265 1.265 26 H -0.264 1.264 27 H -0.270 1.270 28 C -0.194 4.194 29 C -0.028 4.028 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.355 0.645 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.144 0.856 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.103 0.897 45 H 0.284 0.716 46 H 0.104 0.896 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.142 3.537 27.254 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.035 3.965 3 H 0.070 0.930 4 N -0.305 5.305 5 C -0.016 4.016 6 H 0.070 0.930 7 C -0.234 4.234 8 C -0.102 4.102 9 C -0.027 4.027 10 C -0.160 4.160 11 C -0.079 4.079 12 N -0.233 5.233 13 C -0.082 4.082 14 C -0.201 4.201 15 C -0.136 4.136 16 C -0.094 4.094 17 C -0.257 4.257 18 C 0.070 3.930 19 O -0.159 6.159 20 C -0.473 4.473 21 H 0.098 0.902 22 C -0.185 4.185 23 N -0.564 5.564 24 Si 0.788 3.212 25 H -0.190 1.190 26 H -0.188 1.188 27 H -0.195 1.195 28 C -0.214 4.214 29 C -0.046 4.046 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.176 0.824 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.175 0.825 40 H 0.179 0.821 41 H 0.161 0.839 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.121 0.879 45 H 0.094 0.906 46 H 0.122 0.878 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.741 1.991 26.184 26.684 hybrid contribution 0.344 1.116 -0.654 1.339 sum -4.397 3.107 25.530 26.091 Atomic orbital electron populations 1.21893 0.92950 1.02875 1.02369 1.20095 0.95034 0.94084 0.87256 0.93018 1.60406 1.03056 1.60416 1.06616 1.21415 0.90239 0.92719 0.97238 0.93015 1.22428 1.02927 0.96955 1.01077 1.20689 1.02030 0.90283 0.97166 1.20320 0.92111 0.95805 0.94499 1.22108 1.00055 0.93418 1.00372 1.23051 0.94491 0.97606 0.92763 1.67568 1.02717 1.33358 1.19623 1.22747 0.97453 0.91035 0.96948 1.22157 1.00052 0.98558 0.99382 1.19759 1.04426 0.93418 0.95993 1.20914 0.96740 0.99704 0.92087 1.21167 1.09887 0.93767 1.00886 1.19632 0.93824 0.92043 0.87515 1.83533 1.75622 1.36675 1.20022 1.20698 1.47105 0.91431 0.88070 0.90205 1.25199 0.95633 1.04466 0.93237 1.69722 1.46564 1.37826 1.02318 0.85294 0.78977 0.78490 0.78414 1.18979 1.18838 1.19480 1.20402 1.08346 0.98945 0.93662 1.20676 0.94914 0.94154 0.94865 0.91869 0.90269 0.92956 0.82413 0.91863 0.92874 0.90521 0.89580 0.88374 0.82508 0.82097 0.83899 0.84567 0.85169 0.87865 0.90596 0.87773 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.17 71.98 0.66 -1.63 16 2 C 0.14 2.76 2.64 44.17 0.12 2.88 16 3 H 0.05 0.96 6.68 -2.39 -0.02 0.94 16 4 N -0.67 -9.60 4.71 -473.31 -2.23 -11.83 16 5 C 0.09 1.36 2.41 44.92 0.11 1.47 16 6 H 0.05 1.13 7.60 -2.39 -0.02 1.11 16 7 C -0.18 -1.79 9.18 71.98 0.66 -1.13 16 8 C -0.06 -0.82 5.08 29.85 0.15 -0.67 16 9 C -0.02 -0.37 4.97 -19.67 -0.10 -0.47 16 10 C -0.14 -2.70 8.52 22.36 0.19 -2.51 16 11 C 0.08 1.90 11.18 84.68 0.95 2.84 16 12 N -0.52 -16.26 10.36 -195.84 -2.03 -18.29 16 13 C 0.07 2.17 11.18 84.68 0.95 3.12 16 14 C -0.18 -4.38 9.82 22.36 0.22 -4.16 16 15 C -0.13 -3.96 4.50 -19.83 -0.09 -4.05 16 16 C -0.08 -2.67 9.66 22.25 0.21 -2.46 16 17 C -0.24 -10.91 9.17 22.39 0.21 -10.71 16 18 C 0.12 5.91 6.65 22.58 0.15 6.06 16 19 O -0.25 -14.53 8.59 -22.75 -0.20 -14.73 16 20 C -0.40 -24.45 9.95 67.92 0.68 -23.78 16 21 H 0.08 5.13 5.44 -2.91 -0.02 5.11 16 22 C 0.01 0.77 5.49 84.83 0.47 1.24 16 23 N -0.92 -56.77 13.96 21.61 0.30 -56.47 16 24 Si 0.97 48.00 28.62 68.60 1.96 49.96 16 25 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 27 H -0.27 -13.78 7.11 99.48 0.71 -13.07 16 28 C -0.19 -8.19 9.99 22.39 0.22 -7.96 16 29 C -0.03 -0.91 9.31 22.25 0.21 -0.70 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.35 3.26 8.20 -89.69 -0.74 2.52 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.61 7.07 -2.38 -0.02 0.59 16 36 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 37 H 0.09 0.95 8.10 -2.38 -0.02 0.94 16 38 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 39 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 42 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 43 H 0.13 3.85 8.03 -2.91 -0.02 3.82 16 44 H 0.10 5.23 5.64 -2.91 -0.02 5.21 16 45 H 0.28 16.03 8.31 -92.71 -0.77 15.26 16 46 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 47 H 0.14 4.00 6.71 -2.91 -0.02 3.98 16 Total: -1.00 -73.59 387.30 4.01 -69.59 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.24 Total: 24.38 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 5.96 Total: -42.61 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -3.96 Total: -86.59 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.20 Total: -14.73 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.96 Total: 49.96 kcal Total: -73.59 4.01 -69.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772960708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.685 kcal (2) G-P(sol) polarization free energy of solvation -73.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds