Wall clock time and date at job start Tue Mar 31 2020 14:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.46977 * 2 1 4 4 O 1.42904 * 109.47066 * 240.00066 * 2 1 3 5 5 C 1.50698 * 109.47157 * 120.00378 * 2 1 3 6 6 C 1.38145 * 119.97638 * 94.99848 * 5 2 1 7 7 C 1.38851 * 119.94819 * 180.02562 * 6 5 2 8 8 N 1.39826 * 120.04962 * 179.97438 * 7 6 5 9 9 C 1.46498 * 120.00008 * 180.27717 * 8 7 6 10 10 C 1.52996 * 109.47059 * 179.72232 * 9 8 7 11 11 H 1.09000 * 109.47665 * 59.99541 * 10 9 8 12 12 O 1.42907 * 109.46877 * 299.99566 * 10 9 8 13 13 C 1.53003 * 109.47301 * 179.97438 * 10 9 8 14 14 N 1.46900 * 109.46910 * 184.99501 * 13 10 9 15 15 C 1.46898 * 110.99908 * 66.05303 * 14 13 10 16 16 C 1.46903 * 110.99514 * 189.99793 * 14 13 10 17 17 C 1.50700 * 109.46893 * 170.00584 * 16 14 13 18 18 H 1.08007 * 120.00028 * 359.97438 * 17 16 14 19 19 C 1.37877 * 120.00381 * 180.02562 * 17 16 14 20 20 N 1.31520 * 119.99502 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00399 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47082 * 60.00487 * 21 19 17 23 23 H 1.48505 * 109.47313 * 180.02562 * 21 19 17 24 24 H 1.48493 * 109.47411 * 300.00049 * 21 19 17 25 25 C 1.38901 * 119.90271 * 0.25350 * 7 6 5 26 26 C 1.38098 * 119.94799 * 359.51036 * 25 7 6 27 27 C 1.38446 * 119.97433 * 275.01901 * 5 2 1 28 28 F 1.35099 * 119.94704 * 359.97438 * 27 5 2 29 29 H 1.09001 * 109.47464 * 60.00089 * 1 2 3 30 30 H 1.09000 * 109.47708 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47213 * 299.99801 * 1 2 3 32 32 H 0.96703 * 113.99814 * 59.99841 * 4 2 1 33 33 H 1.07993 * 120.02281 * 0.02562 * 6 5 2 34 34 H 0.97001 * 119.99546 * 359.97438 * 8 7 6 35 35 H 1.09004 * 109.46963 * 299.72028 * 9 8 7 36 36 H 1.08994 * 109.47567 * 59.72180 * 9 8 7 37 37 H 0.96694 * 114.00447 * 299.99744 * 12 10 9 38 38 H 1.08992 * 109.47039 * 305.00167 * 13 10 9 39 39 H 1.09003 * 109.46940 * 65.00344 * 13 10 9 40 40 H 1.08994 * 109.47505 * 59.98887 * 15 14 13 41 41 H 1.09002 * 109.47438 * 179.97438 * 15 14 13 42 42 H 1.09002 * 109.46823 * 299.99157 * 15 14 13 43 43 H 1.09000 * 109.47465 * 289.99860 * 16 14 13 44 44 H 1.09000 * 109.47320 * 50.00860 * 16 14 13 45 45 H 0.97003 * 119.99467 * 179.97438 * 20 19 17 46 46 H 1.08002 * 120.02201 * 179.75416 * 25 7 6 47 47 H 1.08009 * 119.97170 * 180.23281 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7105 1.2304 6 6 2.3607 -2.0509 1.1677 7 6 2.8229 -2.7050 2.3019 8 7 3.1554 -4.0618 2.2410 9 6 3.6373 -4.7524 3.4397 10 6 3.9206 -6.2181 3.1047 11 1 4.6796 -6.2724 2.3243 12 8 2.7199 -6.8424 2.6456 13 6 4.4245 -6.9393 4.3565 14 7 4.8095 -8.3135 4.0083 15 6 5.9706 -8.3229 3.1085 16 6 5.0725 -9.1083 5.2154 17 6 5.2222 -10.5597 4.8384 18 1 5.1306 -10.8616 3.8054 19 6 5.4751 -11.5025 5.8121 20 7 5.5861 -11.1350 7.0701 21 14 5.6599 -13.3016 5.3449 22 1 6.7926 -13.4529 4.3966 23 1 5.9248 -14.1053 6.5653 24 1 4.4089 -13.7771 4.7016 25 6 2.9491 -2.0111 3.4985 26 6 2.6243 -0.6700 3.5553 27 6 2.1639 -0.0195 2.4228 28 9 1.8423 1.2913 2.4818 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.7209 -0.2701 -1.9980 33 1 2.2579 -2.5894 0.2373 34 1 3.0628 -4.5468 1.4060 35 1 4.5531 -4.2762 3.7900 36 1 2.8783 -4.6983 4.2201 37 1 1.9994 -6.8313 3.2904 38 1 5.2889 -6.4102 4.7574 39 1 3.6331 -6.9626 5.1057 40 1 6.8141 -7.8371 3.5987 41 1 6.2348 -9.3525 2.8669 42 1 5.7245 -7.7862 2.1922 43 1 5.9909 -8.7591 5.6874 44 1 4.2412 -8.9977 5.9116 45 1 5.7636 -11.7983 7.7552 46 1 3.3047 -2.5190 4.3828 47 1 2.7259 -0.1291 4.4846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819485204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:42 Heat of formation + Delta-G solvation = -116.990033 kcal Electronic energy + Delta-G solvation = -27082.784292 eV Core-core repulsion = 22986.826278 eV Total energy + Delta-G solvation = -4095.958013 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.92216 -39.88350 -38.43111 -37.49658 -35.84986 -34.77460 -32.57249 -32.32104 -30.89373 -29.64824 -28.36795 -27.11297 -25.99359 -24.62340 -23.63264 -22.74981 -21.54487 -20.75052 -20.20177 -18.06647 -17.58759 -17.17152 -16.73299 -16.24731 -16.09307 -15.86434 -15.59700 -15.12376 -14.90951 -14.74721 -14.59334 -14.31503 -14.08750 -13.94588 -13.60105 -13.29800 -13.11373 -12.97767 -12.84426 -12.70549 -12.47604 -12.16015 -11.94304 -11.66918 -11.41539 -11.22788 -10.99214 -10.95292 -10.84334 -10.71351 -10.63078 -10.37595 -10.11716 -10.01789 -9.73523 -9.20307 -9.12416 -8.46325 -7.51089 -7.27987 -6.05701 -4.06971 1.01855 1.19779 3.17820 3.32315 3.36135 3.39564 3.44954 3.73190 4.23875 4.35621 4.36719 4.50096 4.61610 4.64215 4.69171 4.82379 4.95565 4.99726 5.17278 5.20765 5.24391 5.30475 5.33206 5.38166 5.46746 5.54633 5.56089 5.71360 5.77458 5.95317 6.00827 6.06738 6.09842 6.15213 6.19478 6.29219 6.55135 6.70684 7.10357 7.21256 7.24377 7.26978 7.54843 7.75226 7.83350 8.03779 8.13794 8.49747 9.00423 9.57299 11.05155 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.029854 B = 0.001878 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.657594 B =14905.077824 C =15442.978058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.145 3.855 3 H 0.068 0.932 4 O -0.560 6.560 5 C -0.070 4.070 6 C -0.145 4.145 7 C 0.213 3.787 8 N -0.734 5.734 9 C 0.090 3.910 10 C 0.102 3.898 11 H 0.102 0.898 12 O -0.544 6.544 13 C 0.027 3.973 14 N -0.530 5.530 15 C 0.035 3.965 16 C 0.193 3.807 17 C -0.507 4.507 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.900 5.900 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 C -0.174 4.174 26 C -0.101 4.101 27 C 0.033 3.967 28 F -0.148 7.148 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.381 0.619 33 H 0.136 0.864 34 H 0.407 0.593 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.373 0.627 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.010 0.990 41 H 0.076 0.924 42 H 0.046 0.954 43 H -0.010 1.010 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.131 0.869 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 24.363 -11.626 28.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.086 3.914 3 H 0.085 0.915 4 O -0.366 6.366 5 C -0.071 4.071 6 C -0.168 4.168 7 C 0.108 3.892 8 N -0.363 5.363 9 C -0.036 4.036 10 C 0.042 3.958 11 H 0.120 0.880 12 O -0.349 6.349 13 C -0.103 4.103 14 N -0.254 5.254 15 C -0.114 4.114 16 C 0.068 3.932 17 C -0.546 4.546 18 H 0.082 0.918 19 C -0.147 4.147 20 N -0.539 5.539 21 Si 0.728 3.272 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.197 4.197 26 C -0.120 4.120 27 C 0.012 3.988 28 F -0.127 7.127 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.228 0.772 33 H 0.154 0.846 34 H 0.242 0.758 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.219 0.781 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.028 0.972 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.008 0.992 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.149 0.851 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.880 23.513 -11.574 27.367 hybrid contribution 0.213 -0.062 0.325 0.393 sum -7.667 23.451 -11.250 27.116 Atomic orbital electron populations 1.22459 0.95108 1.03345 1.02789 1.20376 0.93051 0.94356 0.83636 0.91467 1.86527 1.76960 1.57475 1.15685 1.19268 1.00913 0.94205 0.92763 1.20261 1.05002 0.93591 0.97900 1.17898 0.93061 0.84702 0.93510 1.44651 1.72193 1.06435 1.13026 1.22144 0.99498 0.93936 0.87991 1.22151 0.88167 0.87662 0.97825 0.88010 1.86588 1.22669 1.80968 1.44634 1.22652 1.00003 0.91837 0.95808 1.62043 1.36077 1.08261 1.19018 1.22272 0.91046 1.02492 0.95558 1.19743 0.95213 0.92447 0.85767 1.21118 1.47924 0.91355 0.94183 0.91845 1.25001 0.95519 0.99285 0.94903 1.69951 1.49607 1.34282 1.00094 0.86533 0.78687 0.84397 0.77632 1.20278 1.21371 1.20119 1.20540 1.07780 0.94025 0.97348 1.20803 0.99170 0.94713 0.97329 1.17098 1.08411 0.78567 0.94746 1.91432 1.91233 1.32943 1.97063 0.91850 0.91350 0.91247 0.77170 0.84583 0.75751 0.91374 0.91736 0.78063 0.95044 0.90850 0.97187 0.90543 0.93559 0.99216 0.95317 0.92864 0.85102 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.23 9.52 37.15 0.35 -0.87 16 2 C 0.14 1.21 3.56 -27.89 -0.10 1.11 16 3 H 0.07 0.53 7.79 -51.93 -0.40 0.13 16 4 O -0.56 -4.52 12.15 -35.23 -0.43 -4.94 16 5 C -0.07 -0.73 5.07 -104.58 -0.53 -1.26 16 6 C -0.14 -1.55 9.20 -39.39 -0.36 -1.91 16 7 C 0.21 2.27 6.65 -83.74 -0.56 1.71 16 8 N -0.73 -7.48 5.63 -58.61 -0.33 -7.81 16 9 C 0.09 0.91 4.58 -4.04 -0.02 0.89 16 10 C 0.10 1.30 3.01 -26.73 -0.08 1.22 16 11 H 0.10 1.36 6.33 -51.93 -0.33 1.04 16 12 O -0.54 -7.54 13.03 -35.23 -0.46 -8.00 16 13 C 0.03 0.43 4.60 -3.82 -0.02 0.41 16 14 N -0.53 -11.02 4.70 -244.37 -1.15 -12.17 16 15 C 0.03 0.67 9.14 60.06 0.55 1.21 16 16 C 0.19 4.94 4.72 -4.97 -0.02 4.91 16 17 C -0.51 -14.15 8.46 -34.44 -0.29 -14.45 16 18 H 0.06 1.76 7.12 -52.48 -0.37 1.39 16 19 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 21 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.17 -1.75 9.31 -39.39 -0.37 -2.11 16 26 C -0.10 -0.99 10.02 -39.54 -0.40 -1.39 16 27 C 0.03 0.35 7.24 -39.42 -0.29 0.07 16 28 F -0.15 -1.60 16.56 2.25 0.04 -1.56 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.38 1.34 9.08 45.56 0.41 1.75 16 33 H 0.14 1.43 7.35 -52.49 -0.39 1.05 16 34 H 0.41 4.13 8.36 -40.82 -0.34 3.79 16 35 H 0.07 0.67 7.96 -51.93 -0.41 0.26 16 36 H 0.06 0.62 7.94 -51.93 -0.41 0.20 16 37 H 0.37 4.22 9.05 45.56 0.41 4.63 16 38 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 40 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 42 H 0.05 0.76 6.37 -51.93 -0.33 0.43 16 43 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 44 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.13 1.16 6.73 -52.49 -0.35 0.80 16 47 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 388.64 15.07 5.86 5.86 Total: -1.00 -32.20 388.64 -8.76 -40.97 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.78 Total: 5.90 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -2.22 Total: -9.01 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.74 Total: -45.75 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.89 Total: -12.95 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.20 -8.76 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819485204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.025 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds