Wall clock time and date at job start Tue Mar 31 2020 14:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47200 * 2 1 4 4 C 1.52995 * 109.47454 * 239.99427 * 2 1 3 5 5 N 1.46904 * 109.47124 * 185.00137 * 4 2 1 6 6 C 1.46895 * 111.00107 * 180.02562 * 5 4 2 7 7 C 1.50694 * 109.47359 * 179.97438 * 6 5 4 8 8 C 1.29445 * 117.96036 * 94.73578 * 7 6 5 9 9 C 1.50071 * 124.07656 * 180.23666 * 8 7 6 10 10 C 1.53021 * 110.19942 * 343.31787 * 9 8 7 11 11 C 1.53388 * 108.43902 * 49.25015 * 10 9 8 12 12 C 1.50064 * 117.96672 * 274.99964 * 7 6 5 13 13 N 1.46506 * 109.46809 * 119.99200 * 2 1 3 14 14 C 1.46492 * 119.99800 * 60.00449 * 13 2 1 15 15 C 1.34773 * 119.99968 * 239.99992 * 13 2 1 16 16 O 1.21283 * 120.00360 * 359.73034 * 15 13 2 17 17 C 1.50706 * 120.00081 * 180.02562 * 15 13 2 18 18 S 1.80996 * 109.47276 * 179.72626 * 17 15 13 19 19 C 1.76195 * 99.99998 * 179.97438 * 18 17 15 20 20 H 1.08007 * 120.00003 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00413 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99814 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00484 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47100 * 89.99929 * 23 21 19 25 25 H 1.48505 * 109.47262 * 210.00143 * 23 21 19 26 26 H 1.48505 * 109.47183 * 330.00192 * 23 21 19 27 27 H 1.08999 * 109.46868 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47763 * 300.00641 * 1 2 3 29 29 H 1.09002 * 109.47013 * 60.00640 * 1 2 3 30 30 H 1.08996 * 109.47091 * 305.00288 * 4 2 1 31 31 H 1.09001 * 109.46941 * 65.00273 * 4 2 1 32 32 H 1.00903 * 110.99903 * 303.95200 * 5 4 2 33 33 H 1.09004 * 109.47138 * 300.00245 * 6 5 4 34 34 H 1.09004 * 109.47448 * 59.99624 * 6 5 4 35 35 H 1.08003 * 117.96169 * 0.46857 * 8 7 6 36 36 H 1.08997 * 109.48614 * 222.99389 * 9 8 7 37 37 H 1.09001 * 109.17721 * 103.44392 * 9 8 7 38 38 H 1.08996 * 109.64444 * 289.56043 * 10 9 8 39 39 H 1.09005 * 109.81417 * 169.03424 * 10 9 8 40 40 H 1.09003 * 109.64367 * 172.88222 * 11 10 9 41 41 H 1.09000 * 109.64848 * 52.24423 * 11 10 9 42 42 H 1.09002 * 109.36015 * 283.05383 * 12 7 6 43 43 H 1.09002 * 109.36019 * 42.77144 * 12 7 6 44 44 H 1.09001 * 109.47443 * 269.99328 * 14 13 2 45 45 H 1.08999 * 109.47479 * 30.00306 * 14 13 2 46 46 H 1.09006 * 109.47080 * 149.99714 * 14 13 2 47 47 H 1.09001 * 109.46564 * 299.73030 * 17 15 13 48 48 H 1.08998 * 109.47012 * 59.72084 * 17 15 13 49 49 H 0.97001 * 120.00629 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5041 -0.8267 -1.1902 6 6 4.0305 -1.5150 -2.3763 7 6 5.5319 -1.6034 -2.2808 8 6 6.0459 -2.6838 -1.7866 9 6 7.5197 -2.9154 -1.6237 10 6 8.3086 -1.9196 -2.4767 11 6 7.7630 -0.5115 -2.2078 12 6 6.3377 -0.4313 -2.7590 13 7 2.0182 -0.6905 1.1963 14 6 1.6644 -2.0930 1.4282 15 6 2.7930 -0.0354 2.0834 16 8 3.0902 1.1243 1.8889 17 6 3.2958 -0.7458 3.3138 18 16 4.3079 0.3896 4.2949 19 6 4.7492 -0.6707 5.6311 20 1 4.3951 -1.6909 5.6506 21 6 5.5520 -0.1951 6.6586 22 7 5.9832 1.0484 6.6350 23 14 6.0194 -1.3189 8.0755 24 1 7.2836 -2.0267 7.7498 25 1 6.2077 -0.5107 9.3071 26 1 4.9384 -2.3130 8.2962 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.6054 -1.7198 -1.2950 31 1 1.7517 -0.1584 -2.1369 32 1 3.9280 0.0825 -1.0822 33 1 3.6097 -2.5190 -2.4305 34 1 3.7560 -0.9573 -3.2718 35 1 5.3725 -3.4687 -1.4756 36 1 7.7647 -3.9310 -1.9344 37 1 7.7887 -2.7857 -0.5753 38 1 8.1872 -2.1643 -3.5319 39 1 9.3648 -1.9604 -2.2103 40 1 8.3910 0.2263 -2.7072 41 1 7.7519 -0.3215 -1.1345 42 1 6.3709 -0.4359 -3.8485 43 1 5.8711 0.4921 -2.4157 44 1 0.7375 -2.1442 1.9996 45 1 1.5296 -2.5968 0.4711 46 1 2.4628 -2.5816 1.9867 47 1 2.4482 -1.0844 3.9095 48 1 3.8974 -1.6049 3.0169 49 1 6.5446 1.3808 7.3528 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753679082.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:05 Heat of formation + Delta-G solvation = -36.302248 kcal Electronic energy + Delta-G solvation = -25972.653765 eV Core-core repulsion = 22446.407813 eV Total energy + Delta-G solvation = -3526.245952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.62437 -38.85636 -36.73664 -34.93833 -32.45899 -32.37022 -30.98195 -30.69366 -28.55347 -26.68244 -26.37009 -25.42260 -23.95080 -23.07407 -21.54681 -21.32540 -18.96399 -17.66057 -17.62390 -16.81982 -16.24711 -15.63798 -15.36987 -15.14859 -14.76012 -14.72945 -14.48801 -14.08932 -13.82485 -13.81051 -13.40038 -13.13625 -12.89085 -12.81546 -12.69804 -12.50571 -12.32657 -12.25826 -12.17938 -11.93993 -11.79396 -11.78805 -11.46154 -11.02139 -10.96988 -10.88670 -10.87207 -10.70312 -10.54651 -10.22447 -9.73617 -9.18561 -9.01003 -8.89096 -8.45070 -8.29239 -8.13638 -6.41738 -6.15972 -3.85085 2.16990 3.06448 3.24476 3.26172 3.30709 3.34560 3.72254 4.16772 4.26440 4.54024 4.63392 4.73258 4.83028 5.01459 5.07819 5.12318 5.18615 5.19269 5.22622 5.26182 5.29090 5.32864 5.40820 5.45880 5.50576 5.52295 5.55866 5.59088 5.63808 5.68236 5.74484 5.80274 5.86384 5.90333 5.95055 5.99461 6.06454 6.09561 6.11587 6.26053 6.26668 6.59494 6.80913 6.95545 6.99365 7.30883 7.65035 7.74577 8.41014 8.75256 9.29392 10.91486 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.008941 B = 0.003687 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.842777 B = 7593.415140 C = 9746.120502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.099 0.901 4 C 0.050 3.950 5 N -0.675 5.675 6 C 0.096 3.904 7 C -0.128 4.128 8 C -0.129 4.129 9 C -0.093 4.093 10 C -0.119 4.119 11 C -0.122 4.122 12 C -0.080 4.080 13 N -0.602 5.602 14 C 0.088 3.912 15 C 0.541 3.459 16 O -0.525 6.525 17 C -0.147 4.147 18 S -0.062 6.062 19 C -0.533 4.533 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.917 3.083 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.346 0.654 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.298 -8.056 -21.296 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.117 0.883 4 C -0.080 4.080 5 N -0.307 5.307 6 C -0.032 4.032 7 C -0.128 4.128 8 C -0.148 4.148 9 C -0.130 4.130 10 C -0.156 4.156 11 C -0.159 4.159 12 C -0.117 4.117 13 N -0.337 5.337 14 C -0.055 4.055 15 C 0.329 3.671 16 O -0.400 6.400 17 C -0.297 4.297 18 S 0.164 5.836 19 C -0.681 4.681 20 H 0.089 0.911 21 C -0.135 4.135 22 N -0.504 5.504 23 Si 0.743 3.257 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.165 0.835 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.107 0.893 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.784 -6.768 -21.106 22.675 hybrid contribution -0.279 -1.576 0.494 1.675 sum -5.063 -8.344 -20.612 22.806 Atomic orbital electron populations 1.22084 0.94900 1.02210 1.02482 1.20981 0.93492 0.98078 0.84120 0.88296 1.22345 0.88780 1.00563 0.96335 1.60404 1.04417 1.26562 1.39306 1.21000 0.92053 0.99169 0.91020 1.20656 0.94414 0.95999 1.01763 1.21888 0.96406 0.97912 0.98629 1.20463 0.92560 0.99107 1.00822 1.21579 0.99170 0.95141 0.99721 1.21606 0.95503 0.96798 1.02003 1.20345 0.95026 0.96481 0.99833 1.47564 1.51870 1.12057 1.22181 1.21604 1.00469 0.82097 1.01373 1.20188 0.76839 0.86612 0.83468 1.90657 1.56378 1.16941 1.75996 1.23521 1.04039 1.04569 0.97615 1.85341 1.60840 1.15618 1.21765 1.22870 1.36903 0.99867 1.08468 0.91063 1.24969 0.95182 0.95481 0.97899 1.70022 1.33085 1.14429 1.32864 0.86202 0.78885 0.79985 0.80628 1.20305 1.20798 1.19716 0.92370 0.91801 0.91801 0.90927 0.94643 0.83479 0.91049 0.95330 0.87983 0.91365 0.90466 0.92157 0.91812 0.91859 0.91111 0.91494 0.91360 0.93424 0.91681 0.90945 0.89690 0.89321 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.19 37.16 0.34 -1.18 16 2 C 0.14 1.66 2.88 -67.93 -0.20 1.47 16 3 H 0.10 1.43 6.90 -51.93 -0.36 1.08 16 4 C 0.05 0.50 4.93 -3.82 -0.02 0.48 16 5 N -0.68 -7.93 6.22 -115.06 -0.72 -8.64 16 6 C 0.10 0.97 5.69 -4.98 -0.03 0.94 16 7 C -0.13 -1.38 5.35 -100.95 -0.54 -1.92 16 8 C -0.13 -1.42 9.37 -35.90 -0.34 -1.76 16 9 C -0.09 -0.93 6.11 -28.18 -0.17 -1.11 16 10 C -0.12 -1.11 6.01 -26.52 -0.16 -1.26 16 11 C -0.12 -1.24 6.01 -26.52 -0.16 -1.40 16 12 C -0.08 -0.80 5.80 -28.18 -0.16 -0.97 16 13 N -0.60 -8.67 2.48 -173.93 -0.43 -9.10 16 14 C 0.09 1.01 9.30 59.84 0.56 1.57 16 15 C 0.54 10.54 7.69 -10.98 -0.08 10.45 16 16 O -0.52 -12.07 15.19 5.56 0.08 -11.98 16 17 C -0.15 -3.11 4.71 36.01 0.17 -2.94 16 18 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 19 C -0.53 -15.44 9.50 30.94 0.29 -15.15 16 20 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 23 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 27 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.67 6.88 -51.93 -0.36 0.31 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.35 4.58 8.69 -39.29 -0.34 4.24 16 33 H 0.07 0.69 7.80 -51.93 -0.41 0.28 16 34 H 0.03 0.27 8.11 -51.93 -0.42 -0.16 16 35 H 0.10 1.10 7.74 -52.48 -0.41 0.70 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.72 8.11 -51.93 -0.42 0.29 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.62 6.53 -51.93 -0.34 0.28 16 46 H 0.07 0.88 6.43 -51.93 -0.33 0.55 16 47 H 0.08 1.69 8.11 -51.92 -0.42 1.27 16 48 H 0.09 1.79 7.39 -51.92 -0.38 1.41 16 49 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 402.62 15.07 6.07 6.07 Total: -1.00 -33.58 402.62 -10.87 -44.45 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.78 Total: 3.00 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.59 Total: -10.73 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.41 Total: -43.53 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.58 -10.87 -44.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679082.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.150 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds