Wall clock time and date at job start Tue Mar 31 2020 15:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 C 1.53001 * 109.47429 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47376 * 179.97438 * 4 3 2 6 6 C 1.36542 * 127.14297 * 269.68372 * 5 4 3 7 7 S 1.76197 * 126.48536 * 0.02562 * 6 5 4 8 8 C 1.80993 * 100.00109 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47226 * 179.97438 * 8 7 6 10 10 H 1.07994 * 119.99990 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00173 * 179.97438 * 9 8 7 12 12 N 1.31523 * 119.99933 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00208 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46923 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47314 * 120.00364 * 13 11 9 16 16 H 1.48503 * 109.46892 * 240.00146 * 13 11 9 17 17 N 1.31290 * 107.02967 * 179.89784 * 6 5 4 18 18 N 1.28524 * 109.85597 * 0.37756 * 17 6 5 19 19 C 1.30301 * 110.08011 * 359.75968 * 18 17 6 20 20 C 1.50698 * 126.33807 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.46621 * 195.02312 * 20 19 18 22 22 C 1.52999 * 109.47498 * 75.02590 * 20 19 18 23 23 C 1.52991 * 109.47392 * 176.38462 * 22 20 19 24 24 N 1.46901 * 109.47293 * 315.02479 * 20 19 18 25 25 C 1.46903 * 111.00021 * 299.99451 * 24 20 19 26 26 C 1.46899 * 110.99904 * 63.95068 * 24 20 19 27 27 H 1.09002 * 109.47643 * 300.00357 * 1 2 3 28 28 H 1.09003 * 109.46956 * 60.00246 * 1 2 3 29 29 H 1.09001 * 109.47401 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47643 * 239.99643 * 2 1 3 31 31 H 1.09002 * 109.47405 * 119.99465 * 2 1 3 32 32 H 1.08992 * 109.47550 * 59.99647 * 3 2 1 33 33 H 1.09003 * 109.46966 * 299.99748 * 3 2 1 34 34 H 1.09003 * 109.46829 * 299.99818 * 4 3 2 35 35 H 1.09002 * 109.47101 * 59.99256 * 4 3 2 36 36 H 1.08996 * 109.47334 * 300.00106 * 8 7 6 37 37 H 1.09000 * 109.47344 * 60.00083 * 8 7 6 38 38 H 0.97001 * 119.99911 * 180.02562 * 12 11 9 39 39 H 1.08996 * 109.46866 * 296.39080 * 22 20 19 40 40 H 1.09008 * 109.46984 * 56.38406 * 22 20 19 41 41 H 1.08999 * 109.47499 * 295.23596 * 23 22 20 42 42 H 1.08998 * 109.47114 * 55.23698 * 23 22 20 43 43 H 1.08997 * 109.47257 * 175.23396 * 23 22 20 44 44 H 1.09006 * 109.47025 * 65.25794 * 25 24 20 45 45 H 1.08993 * 109.47403 * 185.26360 * 25 24 20 46 46 H 1.09001 * 109.47470 * 305.26758 * 25 24 20 47 47 H 1.08999 * 109.47084 * 56.04507 * 26 24 20 48 48 H 1.08998 * 109.46628 * 176.04719 * 26 24 20 49 49 H 1.08997 * 109.46807 * 296.04216 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3383 3.5987 -1.0900 7 16 4.1802 3.1271 -2.7803 8 6 4.7257 4.6538 -3.5850 9 6 4.6728 4.4798 -5.0810 10 1 4.3428 3.5426 -5.5042 11 6 5.0445 5.5174 -5.9093 12 7 5.4459 6.6589 -5.3938 13 14 4.9782 5.3019 -7.7636 14 1 4.4955 3.9352 -8.0862 15 1 4.0501 6.3044 -8.3456 16 1 6.3360 5.4951 -8.3332 17 7 4.7450 4.7627 -0.6391 18 7 4.7431 4.7579 0.6462 19 6 4.3340 3.6026 1.0886 20 6 4.1916 3.1992 2.5336 21 1 4.0904 2.1159 2.6000 22 6 2.9493 3.8649 3.1289 23 6 2.7539 3.3851 4.5684 24 7 5.3818 3.6267 3.2809 25 6 6.5966 3.0057 2.7362 26 6 5.4986 5.0910 3.2920 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9336 0.9286 0.8892 35 1 3.9329 0.9288 -0.8908 36 1 4.0705 5.4737 -3.2908 37 1 5.7482 4.8791 -3.2818 38 1 5.7071 7.3890 -5.9766 39 1 3.0780 4.9472 3.1209 40 1 2.0746 3.5986 2.5353 41 1 2.5411 2.3161 4.5694 42 1 3.6615 3.5754 5.1412 43 1 1.9199 3.9220 5.0204 44 1 6.7674 3.3693 1.7228 45 1 7.4495 3.2643 3.3636 46 1 6.4742 1.9228 2.7177 47 1 4.5859 5.5252 3.6999 48 1 6.3477 5.3830 3.9100 49 1 5.6491 5.4512 2.2743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066317155.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:37 Heat of formation + Delta-G solvation = 60.983256 kcal Electronic energy + Delta-G solvation = -26558.717532 eV Core-core repulsion = 23068.982947 eV Total energy + Delta-G solvation = -3489.734585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.62839 -38.27741 -36.61576 -33.79934 -33.20460 -33.08455 -30.46084 -29.21838 -28.63029 -27.58986 -26.93212 -24.49669 -23.37713 -23.15164 -22.22907 -21.66465 -21.42551 -19.50899 -17.52897 -16.55747 -16.29707 -16.05536 -15.87352 -15.58736 -15.08995 -14.94691 -14.68762 -14.19272 -13.90534 -13.51463 -13.33793 -13.11083 -12.92603 -12.70914 -12.44859 -12.37333 -12.31288 -11.91598 -11.90591 -11.81513 -11.71664 -11.61774 -11.42593 -11.16672 -11.00690 -10.96714 -10.91030 -10.79340 -10.73034 -10.53634 -10.03270 -9.91947 -9.67508 -9.39634 -9.23946 -8.63290 -8.49295 -6.89296 -6.21924 -4.30425 1.82312 1.96614 2.84117 3.18108 3.22447 3.29413 3.31897 3.45992 3.82622 4.30400 4.30867 4.44123 4.54811 4.64957 4.78641 4.85496 4.88571 5.07947 5.12747 5.14384 5.20881 5.27146 5.37077 5.41021 5.47712 5.51048 5.55788 5.61944 5.63801 5.71158 5.79994 5.83211 5.85525 5.88602 5.91848 5.94855 6.05095 6.09285 6.17981 6.26836 6.52952 6.86320 6.91942 7.01179 7.09627 7.20789 7.65752 7.90698 8.70563 9.05748 9.33282 10.88413 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.003605 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.080615 B = 7765.128668 C = 9435.515613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.136 4.136 4 C 0.108 3.892 5 N -0.466 5.466 6 C 0.181 3.819 7 S -0.059 6.059 8 C 0.080 3.920 9 C -0.526 4.526 10 H 0.067 0.933 11 C 0.071 3.929 12 N -0.881 5.881 13 Si 0.907 3.093 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.280 1.280 17 N -0.293 5.293 18 N -0.282 5.282 19 C 0.132 3.868 20 C 0.177 3.823 21 H 0.092 0.908 22 C -0.115 4.115 23 C -0.143 4.143 24 N -0.518 5.518 25 C 0.021 3.979 26 C -0.003 4.003 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.267 0.733 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.032 0.968 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.061 0.939 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.923 -12.807 17.971 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.175 4.175 4 C -0.015 4.015 5 N -0.161 5.161 6 C -0.193 4.193 7 S 0.170 5.830 8 C -0.067 4.067 9 C -0.566 4.566 10 H 0.085 0.915 11 C -0.135 4.135 12 N -0.517 5.517 13 Si 0.734 3.266 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.206 1.206 17 N -0.136 5.136 18 N -0.122 5.122 19 C -0.139 4.139 20 C 0.065 3.935 21 H 0.110 0.890 22 C -0.153 4.153 23 C -0.200 4.200 24 N -0.240 5.240 25 C -0.127 4.127 26 C -0.151 4.151 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.741 -12.367 17.947 22.539 hybrid contribution 0.114 0.116 -1.359 1.369 sum -5.627 -12.251 16.588 21.376 Atomic orbital electron populations 1.21745 0.95290 1.01727 1.02150 1.21426 0.96467 0.95423 1.02385 1.22008 0.93291 0.98321 1.03856 1.21926 0.95677 0.79234 1.04699 1.46563 1.50872 1.13558 1.05073 1.27412 1.03595 0.91417 0.96872 1.85404 1.83581 1.29002 0.84999 1.21313 1.00561 0.87809 0.97014 1.20618 1.47385 1.00327 0.88306 0.91456 1.24944 0.94417 0.94654 0.99449 1.69998 1.42610 1.03421 1.35701 0.86294 0.77948 0.78467 0.83914 1.19424 1.20609 1.20612 1.74845 1.20310 1.16299 1.02170 1.73808 1.17675 1.16957 1.03724 1.26082 1.05344 0.89928 0.92568 1.20290 0.92672 0.99777 0.80755 0.89012 1.21644 0.95202 1.01634 0.96832 1.21673 1.02153 1.00572 0.95622 1.62508 1.01971 1.09810 1.49750 1.22385 0.92442 0.99136 0.98773 1.22849 1.01920 0.86451 1.03859 0.92751 0.92373 0.92558 0.91349 0.91814 0.91285 0.90330 0.89124 0.88285 0.92976 0.93039 0.92324 0.90459 0.91761 0.93088 0.91116 0.92959 0.94929 0.91051 0.91952 0.91214 0.92056 0.90577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.15 0.37 -0.77 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.14 -1.37 5.54 -26.73 -0.15 -1.52 16 4 C 0.11 1.22 5.85 -4.04 -0.02 1.19 16 5 N -0.47 -7.37 2.81 -113.54 -0.32 -7.69 16 6 C 0.18 3.67 8.07 -88.33 -0.71 2.95 16 7 S -0.06 -1.24 21.72 -107.50 -2.33 -3.57 16 8 C 0.08 2.12 4.99 36.01 0.18 2.30 16 9 C -0.53 -14.51 9.13 -34.44 -0.31 -14.83 16 10 H 0.07 1.80 7.71 -52.49 -0.40 1.39 16 11 C 0.07 1.97 5.46 -17.82 -0.10 1.88 16 12 N -0.88 -25.85 13.29 55.43 0.74 -25.11 16 13 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 N -0.29 -6.66 11.60 30.68 0.36 -6.31 16 18 N -0.28 -5.52 9.16 33.00 0.30 -5.22 16 19 C 0.13 2.08 5.39 -153.99 -0.83 1.25 16 20 C 0.18 2.08 2.25 -68.86 -0.15 1.92 16 21 H 0.09 0.93 6.96 -51.93 -0.36 0.57 16 22 C -0.11 -1.21 5.04 -26.74 -0.13 -1.34 16 23 C -0.14 -1.19 9.85 37.15 0.37 -0.82 16 24 N -0.52 -6.08 4.36 -244.58 -1.07 -7.15 16 25 C 0.02 0.25 9.21 60.07 0.55 0.80 16 26 C 0.00 -0.04 8.82 60.06 0.53 0.49 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.68 7.99 -51.93 -0.41 0.27 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.79 7.11 -51.93 -0.37 0.42 16 35 H 0.10 1.13 7.85 -51.93 -0.41 0.72 16 36 H 0.05 1.49 8.14 -51.92 -0.42 1.07 16 37 H 0.05 1.47 8.14 -51.92 -0.42 1.05 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.08 0.92 6.06 -51.93 -0.31 0.60 16 40 H 0.06 0.68 7.99 -51.92 -0.41 0.26 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.63 7.58 -51.93 -0.39 0.23 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.03 0.48 7.21 -51.93 -0.37 0.11 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 47 H 0.07 0.81 5.93 -51.93 -0.31 0.50 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.08 1.20 5.33 -51.93 -0.28 0.92 16 LS Contribution 401.08 15.07 6.04 6.04 Total: -1.00 -31.33 401.08 -10.55 -41.88 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.67 Total: -1.26 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.58 Total: -7.57 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.01 Total: -51.48 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -2.33 Total: -3.57 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.33 -10.55 -41.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066317155.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.866 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds