Wall clock time and date at job start Tue Mar 31 2020 15:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 C 1.53001 * 109.47429 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47376 * 179.97438 * 4 3 2 6 6 C 1.36542 * 127.14297 * 269.68372 * 5 4 3 7 7 S 1.76197 * 126.48536 * 0.02562 * 6 5 4 8 8 C 1.80993 * 100.00109 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47226 * 179.97438 * 8 7 6 10 10 H 1.07994 * 119.99990 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00173 * 179.97438 * 9 8 7 12 12 N 1.31523 * 119.99933 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00208 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46923 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47314 * 120.00364 * 13 11 9 16 16 H 1.48503 * 109.46892 * 240.00146 * 13 11 9 17 17 N 1.31290 * 107.02967 * 179.89784 * 6 5 4 18 18 N 1.28524 * 109.85597 * 0.37756 * 17 6 5 19 19 C 1.30301 * 110.08011 * 359.75968 * 18 17 6 20 20 C 1.50698 * 126.33807 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.46621 * 195.02312 * 20 19 18 22 22 C 1.52999 * 109.47498 * 75.02590 * 20 19 18 23 23 C 1.52991 * 109.47392 * 176.38462 * 22 20 19 24 24 N 1.46901 * 109.47293 * 315.02479 * 20 19 18 25 25 C 1.46903 * 111.00021 * 299.99451 * 24 20 19 26 26 C 1.46899 * 110.99904 * 63.95068 * 24 20 19 27 27 H 1.09002 * 109.47643 * 300.00357 * 1 2 3 28 28 H 1.09003 * 109.46956 * 60.00246 * 1 2 3 29 29 H 1.09001 * 109.47401 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47643 * 239.99643 * 2 1 3 31 31 H 1.09002 * 109.47405 * 119.99465 * 2 1 3 32 32 H 1.08992 * 109.47550 * 59.99647 * 3 2 1 33 33 H 1.09003 * 109.46966 * 299.99748 * 3 2 1 34 34 H 1.09003 * 109.46829 * 299.99818 * 4 3 2 35 35 H 1.09002 * 109.47101 * 59.99256 * 4 3 2 36 36 H 1.08996 * 109.47334 * 300.00106 * 8 7 6 37 37 H 1.09000 * 109.47344 * 60.00083 * 8 7 6 38 38 H 0.97001 * 119.99911 * 180.02562 * 12 11 9 39 39 H 1.08996 * 109.46866 * 296.39080 * 22 20 19 40 40 H 1.09008 * 109.46984 * 56.38406 * 22 20 19 41 41 H 1.08999 * 109.47499 * 295.23596 * 23 22 20 42 42 H 1.08998 * 109.47114 * 55.23698 * 23 22 20 43 43 H 1.08997 * 109.47257 * 175.23396 * 23 22 20 44 44 H 1.09006 * 109.47025 * 65.25794 * 25 24 20 45 45 H 1.08993 * 109.47403 * 185.26360 * 25 24 20 46 46 H 1.09001 * 109.47470 * 305.26758 * 25 24 20 47 47 H 1.08999 * 109.47084 * 56.04507 * 26 24 20 48 48 H 1.08998 * 109.46628 * 176.04719 * 26 24 20 49 49 H 1.08997 * 109.46807 * 296.04216 * 26 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3383 3.5987 -1.0900 7 16 4.1802 3.1271 -2.7803 8 6 4.7257 4.6538 -3.5850 9 6 4.6728 4.4798 -5.0810 10 1 4.3428 3.5426 -5.5042 11 6 5.0445 5.5174 -5.9093 12 7 5.4459 6.6589 -5.3938 13 14 4.9782 5.3019 -7.7636 14 1 4.4955 3.9352 -8.0862 15 1 4.0501 6.3044 -8.3456 16 1 6.3360 5.4951 -8.3332 17 7 4.7450 4.7627 -0.6391 18 7 4.7431 4.7579 0.6462 19 6 4.3340 3.6026 1.0886 20 6 4.1916 3.1992 2.5336 21 1 4.0904 2.1159 2.6000 22 6 2.9493 3.8649 3.1289 23 6 2.7539 3.3851 4.5684 24 7 5.3818 3.6267 3.2809 25 6 6.5966 3.0057 2.7362 26 6 5.4986 5.0910 3.2920 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9336 0.9286 0.8892 35 1 3.9329 0.9288 -0.8908 36 1 4.0705 5.4737 -3.2908 37 1 5.7482 4.8791 -3.2818 38 1 5.7071 7.3890 -5.9766 39 1 3.0780 4.9472 3.1209 40 1 2.0746 3.5986 2.5353 41 1 2.5411 2.3161 4.5694 42 1 3.6615 3.5754 5.1412 43 1 1.9199 3.9220 5.0204 44 1 6.7674 3.3693 1.7228 45 1 7.4495 3.2643 3.3636 46 1 6.4742 1.9228 2.7177 47 1 4.5859 5.5252 3.6999 48 1 6.3477 5.3830 3.9100 49 1 5.6491 5.4512 2.2743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066317155.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:36 Heat of formation + Delta-G solvation = 43.383849 kcal Electronic energy + Delta-G solvation = -26559.480700 eV Core-core repulsion = 23068.982947 eV Total energy + Delta-G solvation = -3490.497753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.03975 -39.29324 -37.58955 -35.36411 -34.77961 -33.96071 -31.84283 -30.75120 -30.13283 -28.61844 -27.94969 -25.57497 -25.22033 -24.18452 -23.65216 -22.79116 -22.16470 -20.60169 -19.08776 -18.30026 -17.62372 -17.38076 -17.01666 -16.61672 -16.49753 -16.16173 -15.92170 -15.20208 -14.95739 -14.84329 -14.50267 -14.42590 -14.25869 -14.16822 -13.78042 -13.51995 -13.32065 -12.95237 -12.82489 -12.79212 -12.71407 -12.65354 -12.57292 -12.52094 -12.42908 -12.23456 -12.02754 -11.90438 -11.70437 -11.65035 -11.58403 -11.50024 -11.21176 -11.09735 -10.91008 -10.69067 -9.57329 -8.60143 -8.35359 -6.53823 0.20977 0.57714 1.38656 1.40982 1.41273 1.55746 1.66483 1.69697 2.34607 2.80302 2.99116 3.25077 3.50874 3.65630 3.75133 3.96282 4.05337 4.13948 4.17957 4.22835 4.29817 4.38750 4.48013 4.57949 4.59876 4.61053 4.66644 4.74034 4.79605 4.84747 4.89469 4.90253 4.93218 4.96334 4.98069 5.00650 5.17327 5.23047 5.26010 5.32145 5.32712 5.44499 5.49805 5.54655 5.75654 5.79401 5.85980 5.91050 6.55539 7.16176 7.58755 8.77095 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.003605 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.080615 B = 7765.128668 C = 9435.515613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.129 4.129 4 C 0.096 3.904 5 N -0.455 5.455 6 C 0.157 3.843 7 S -0.009 6.009 8 C 0.082 3.918 9 C -0.544 4.544 10 H 0.076 0.924 11 C 0.015 3.985 12 N -0.923 5.923 13 Si 0.984 3.016 14 H -0.255 1.255 15 H -0.274 1.274 16 H -0.274 1.274 17 N -0.345 5.345 18 N -0.316 5.316 19 C 0.159 3.841 20 C 0.176 3.824 21 H 0.124 0.876 22 C -0.112 4.112 23 C -0.134 4.134 24 N -0.505 5.505 25 C 0.023 3.977 26 C 0.000 4.000 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.130 0.870 35 H 0.098 0.902 36 H 0.015 0.985 37 H 0.014 0.986 38 H 0.271 0.729 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.060 0.940 44 H -0.005 1.005 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.900 -16.035 19.500 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.168 4.168 4 C -0.025 4.025 5 N -0.149 5.149 6 C -0.219 4.219 7 S 0.219 5.781 8 C -0.067 4.067 9 C -0.583 4.583 10 H 0.094 0.906 11 C -0.187 4.187 12 N -0.561 5.561 13 Si 0.806 3.194 14 H -0.179 1.179 15 H -0.199 1.199 16 H -0.199 1.199 17 N -0.188 5.188 18 N -0.155 5.155 19 C -0.113 4.113 20 C 0.064 3.936 21 H 0.142 0.858 22 C -0.150 4.150 23 C -0.191 4.191 24 N -0.226 5.226 25 C -0.126 4.126 26 C -0.148 4.148 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.148 0.852 35 H 0.117 0.883 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.014 0.986 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.732 -15.629 19.505 25.885 hybrid contribution 0.408 1.086 -1.616 1.990 sum -6.324 -14.543 17.889 23.906 Atomic orbital electron populations 1.21759 0.95202 1.02412 1.01683 1.21412 0.96456 0.93570 1.03604 1.21966 0.92145 0.99963 1.02714 1.22424 0.96614 0.76800 1.06632 1.46839 1.49732 1.14802 1.03542 1.27184 1.05178 0.92145 0.97413 1.84753 1.83569 1.24496 0.85237 1.20852 0.97756 0.90209 0.97855 1.20990 1.47501 1.00890 0.88942 0.90560 1.26039 0.93473 0.94044 1.05137 1.70147 1.43526 1.04530 1.37917 0.85121 0.78254 0.79115 0.76883 1.17894 1.19909 1.19897 1.74752 1.21724 1.18226 1.04077 1.73792 1.19866 1.19359 1.02486 1.26990 1.01709 0.88579 0.94046 1.20758 0.93347 1.01645 0.77873 0.85849 1.21635 0.94419 1.00453 0.98529 1.21610 1.02349 1.01704 0.93440 1.62583 1.02073 1.09144 1.48841 1.22439 0.92949 1.00340 0.96838 1.22791 1.02950 0.87071 1.01992 0.92339 0.93808 0.91289 0.91337 0.89363 0.90758 0.93240 0.85228 0.88320 0.96698 0.96738 0.92005 0.92352 0.91578 0.91327 0.91481 0.92109 0.98643 0.89651 0.89648 0.90444 0.90687 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.11 -1.38 5.93 30.59 0.18 -1.20 16 3 C -0.13 -2.33 5.54 30.59 0.17 -2.16 16 4 C 0.10 1.94 5.85 86.38 0.51 2.44 16 5 N -0.46 -14.19 2.81 -513.12 -1.44 -15.64 16 6 C 0.16 6.60 8.07 179.55 1.45 8.05 16 7 S -0.01 -0.41 21.72 -56.49 -1.23 -1.64 16 8 C 0.08 4.61 4.99 71.24 0.36 4.96 16 9 C -0.54 -31.01 9.13 25.60 0.23 -30.78 16 10 H 0.08 4.11 7.71 -2.91 -0.02 4.09 16 11 C 0.01 0.84 5.46 84.65 0.46 1.30 16 12 N -0.92 -56.54 13.29 21.45 0.28 -56.26 16 13 Si 0.98 43.42 29.54 68.60 2.03 45.45 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 17 N -0.34 -16.68 11.60 -56.85 -0.66 -17.34 16 18 N -0.32 -12.95 9.16 -49.52 -0.45 -13.41 16 19 C 0.16 4.94 5.39 137.63 0.74 5.69 16 20 C 0.18 3.70 2.25 44.17 0.10 3.80 16 21 H 0.12 1.89 6.96 -2.39 -0.02 1.87 16 22 C -0.11 -2.10 5.04 30.59 0.15 -1.95 16 23 C -0.13 -1.75 9.85 71.98 0.71 -1.05 16 24 N -0.50 -10.82 4.36 -927.73 -4.04 -14.86 16 25 C 0.02 0.49 9.21 127.69 1.18 1.66 16 26 C 0.00 0.00 8.82 127.69 1.13 1.13 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 1.27 7.99 -2.39 -0.02 1.25 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.13 1.65 7.11 -2.39 -0.02 1.63 16 35 H 0.10 2.05 7.85 -2.39 -0.02 2.03 16 36 H 0.01 0.92 8.14 -2.40 -0.02 0.90 16 37 H 0.01 0.89 8.14 -2.40 -0.02 0.87 16 38 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.06 1.33 6.06 -2.39 -0.01 1.32 16 40 H 0.07 1.23 7.99 -2.38 -0.02 1.21 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.96 7.58 -2.39 -0.02 0.94 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H -0.01 -0.16 7.21 -2.38 -0.02 -0.17 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.08 1.45 8.13 -2.39 -0.02 1.43 16 47 H 0.08 1.76 5.93 -2.39 -0.01 1.75 16 48 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.04 1.36 5.33 -2.39 -0.01 1.35 16 Total: -1.00 -74.07 401.08 3.47 -70.60 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.91 Total: 12.40 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 8.08 Total: -9.31 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -6.31 Total: -117.50 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -1.23 Total: -1.64 kcal Total: -74.07 3.47 -70.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066317155.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.980 kcal (2) G-P(sol) polarization free energy of solvation -74.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds