Wall clock time and date at job start Tue Mar 31 2020 14:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 117.00426 * 2 1 4 4 C 1.38697 * 119.98309 * 179.97438 * 3 2 1 5 5 C 1.38111 * 120.02260 * 180.02562 * 4 3 2 6 6 C 1.38863 * 119.97688 * 359.97438 * 5 4 3 7 7 N 1.39947 * 120.01744 * 180.02562 * 6 5 4 8 8 C 1.46494 * 119.99838 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47118 * 180.02562 * 8 7 6 10 10 C 1.38289 * 119.92661 * 89.99939 * 9 8 7 11 11 C 1.38100 * 120.07703 * 180.02562 * 10 9 8 12 12 C 1.38913 * 119.92613 * 359.97438 * 11 10 9 13 13 N 1.39673 * 120.07616 * 179.97438 * 12 11 10 14 14 C 1.46498 * 120.00285 * 0.02562 * 13 12 11 15 15 C 1.46506 * 119.99960 * 180.02562 * 13 12 11 16 16 C 1.50703 * 109.47289 * 89.99927 * 15 13 12 17 17 H 1.07994 * 119.99399 * 0.02562 * 16 15 13 18 18 C 1.37874 * 119.99789 * 179.97438 * 16 15 13 19 19 N 1.31518 * 120.00144 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99733 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46762 * 60.00562 * 20 18 16 22 22 H 1.48506 * 109.46725 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00217 * 20 18 16 24 24 C 1.38912 * 119.84952 * 0.25994 * 12 11 10 25 25 C 1.38107 * 119.92242 * 359.48694 * 24 12 11 26 26 C 1.38859 * 119.96318 * 0.27957 * 6 5 4 27 27 C 1.38108 * 119.97895 * 359.46065 * 26 6 5 28 28 H 1.08990 * 109.47205 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46633 * 299.99949 * 1 2 3 30 30 H 1.09002 * 109.46846 * 59.99378 * 1 2 3 31 31 H 1.07997 * 119.98948 * 0.02632 * 4 3 2 32 32 H 1.07997 * 120.01527 * 179.97438 * 5 4 3 33 33 H 0.97001 * 119.99865 * 0.02562 * 7 6 5 34 34 H 1.09001 * 109.47483 * 60.00117 * 8 7 6 35 35 H 1.09001 * 109.47554 * 299.99975 * 8 7 6 36 36 H 1.07999 * 119.95876 * 0.02562 * 10 9 8 37 37 H 1.07996 * 120.04085 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.46923 * 270.00426 * 14 13 12 39 39 H 1.08997 * 109.46694 * 29.99558 * 14 13 12 40 40 H 1.08995 * 109.47258 * 149.99834 * 14 13 12 41 41 H 1.09001 * 109.47060 * 210.00378 * 15 13 12 42 42 H 1.09004 * 109.47073 * 329.99866 * 15 13 12 43 43 H 0.96997 * 119.99752 * 179.97438 * 19 18 16 44 44 H 1.08000 * 120.03937 * 179.72354 * 24 12 11 45 45 H 1.08005 * 119.96225 * 180.25637 * 25 24 12 46 46 H 1.07999 * 120.00977 * 179.70640 * 26 6 5 47 47 H 1.08004 * 119.98819 * 180.25473 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0596 2.5138 0.0011 6 6 3.3037 3.6787 0.0005 7 7 3.9391 4.9256 0.0005 8 6 3.1413 6.1542 0.0005 9 6 4.0593 7.3493 -0.0001 10 6 4.4791 7.8961 -1.1989 11 6 5.3209 8.9910 -1.2031 12 6 5.7454 9.5434 -0.0013 13 7 6.5971 10.6504 -0.0019 14 6 7.0433 11.2306 -1.2709 15 6 7.0443 11.2312 1.2666 16 6 8.3237 10.5640 1.7014 17 1 8.7602 9.7855 1.0934 18 6 8.9373 10.9483 2.8747 19 7 8.4058 11.8967 3.6148 20 14 10.5228 10.1207 3.4140 21 1 11.5666 10.3286 2.3785 22 1 10.9760 10.7097 4.6997 23 1 10.2857 8.6658 3.5928 24 6 5.3257 8.9886 1.2011 25 6 4.4797 7.8970 1.1981 26 6 1.9170 3.6057 0.0053 27 6 1.2908 2.3747 -0.0006 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.0193 0.3777 0.0005 32 1 5.1381 2.5698 0.0019 33 1 4.9078 4.9763 0.0005 34 1 2.5125 6.1792 0.8905 35 1 2.5124 6.1792 -0.8894 36 1 4.1484 7.4664 -2.1329 37 1 5.6487 9.4173 -2.1396 38 1 7.9685 10.7478 -1.5858 39 1 6.2766 11.0768 -2.0302 40 1 7.2169 12.2988 -1.1409 41 1 7.2177 12.2994 1.1359 42 1 6.2780 11.0779 2.0265 43 1 8.8374 12.1668 4.4404 44 1 5.6575 9.4129 2.1372 45 1 4.1497 7.4677 2.1326 46 1 1.3284 4.5112 0.0097 47 1 0.2123 2.3178 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069830893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:19 Heat of formation + Delta-G solvation = 24.539921 kcal Electronic energy + Delta-G solvation = -25850.852423 eV Core-core repulsion = 22191.800833 eV Total energy + Delta-G solvation = -3659.051589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.15140 -39.19541 -38.01695 -36.19088 -34.48767 -32.75682 -31.13446 -30.63436 -30.55104 -28.50961 -27.87980 -27.04905 -25.79603 -24.36807 -22.89569 -22.09694 -21.64410 -21.34610 -19.71350 -18.25641 -17.32757 -16.68272 -16.52090 -16.14514 -15.80987 -15.39796 -15.06994 -14.78593 -14.54457 -14.25215 -13.88858 -13.74802 -13.69362 -13.26583 -13.21030 -13.01565 -12.96290 -12.70826 -12.37679 -12.17269 -12.00633 -11.89855 -11.55632 -11.35029 -11.30340 -11.03830 -10.88809 -10.79460 -10.73879 -10.33902 -10.00366 -9.84962 -9.52920 -9.05685 -8.97161 -8.55729 -8.40716 -7.09867 -6.58847 -6.09253 -4.23179 1.28376 1.61257 1.98456 2.00383 3.23851 3.24475 3.29207 3.32167 3.66276 3.80952 4.04474 4.35673 4.47564 4.71820 4.80196 4.92882 4.94175 5.06943 5.16036 5.21765 5.23632 5.27102 5.39152 5.45810 5.51691 5.55113 5.68142 5.71263 5.90101 5.90361 6.02406 6.05823 6.20563 6.26310 6.27833 6.30631 6.34154 6.51636 6.59574 6.82445 6.90363 7.07801 7.14391 7.25086 7.27583 7.44240 7.48730 7.74861 7.84403 8.08191 8.16263 8.36539 8.84867 9.43778 10.90205 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.017046 B = 0.002133 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.241272 B =13124.198703 C =14102.978063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.325 6.325 3 C 0.056 3.944 4 C -0.100 4.100 5 C -0.162 4.162 6 C 0.192 3.808 7 N -0.742 5.742 8 C 0.183 3.817 9 C -0.200 4.200 10 C -0.053 4.053 11 C -0.224 4.224 12 C 0.248 3.752 13 N -0.612 5.612 14 C 0.098 3.902 15 C 0.248 3.752 16 C -0.533 4.533 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.190 4.190 25 C -0.053 4.053 26 C -0.165 4.165 27 C -0.156 4.156 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.401 0.599 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.042 0.958 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.036 0.964 43 H 0.265 0.735 44 H 0.134 0.866 45 H 0.112 0.888 46 H 0.123 0.877 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.259 -15.707 -8.873 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.239 6.239 3 C 0.011 3.989 4 C -0.119 4.119 5 C -0.184 4.184 6 C 0.089 3.911 7 N -0.372 5.372 8 C 0.060 3.940 9 C -0.203 4.203 10 C -0.073 4.073 11 C -0.247 4.247 12 C 0.140 3.860 13 N -0.317 5.317 14 C -0.046 4.046 15 C 0.128 3.872 16 C -0.572 4.572 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.212 4.212 25 C -0.073 4.073 26 C -0.188 4.188 27 C -0.175 4.175 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.236 0.764 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.151 0.849 45 H 0.130 0.870 46 H 0.141 0.859 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.129 -15.384 -8.688 22.622 hybrid contribution 1.148 -0.107 0.397 1.219 sum -12.981 -15.491 -8.292 21.845 Atomic orbital electron populations 1.22944 0.79158 1.03364 1.01007 1.86033 1.20678 1.27155 1.90042 1.18730 0.92202 0.83956 1.04046 1.20122 0.91261 0.97784 1.02766 1.20439 0.99490 0.90404 1.08088 1.17850 0.91790 0.85934 0.95565 1.45037 1.08509 1.01750 1.81910 1.19960 0.92257 0.81396 1.00376 1.19246 1.06789 1.00621 0.93601 1.20556 0.95539 0.94596 0.96560 1.20573 1.06468 1.01316 0.96387 1.18005 0.87846 0.86657 0.93487 1.47166 1.47653 1.29416 1.07452 1.21490 0.98549 0.98366 0.86146 1.19336 0.94887 0.93603 0.79351 1.21508 1.08195 1.20768 1.06724 0.92319 1.24963 0.97818 0.95026 0.96246 1.69916 1.39870 1.29139 1.14379 0.86568 0.83287 0.79826 0.77860 1.20219 1.21139 1.20083 1.20907 1.02970 0.99533 0.97797 1.20709 0.95272 0.94600 0.96683 1.20433 0.92620 0.97510 1.08219 1.20958 0.99441 0.91888 1.05249 0.88743 0.93029 0.93065 0.85554 0.85566 0.76388 0.92446 0.92569 0.87242 0.86708 0.93939 0.92723 0.91906 0.95091 0.94570 0.92530 0.84869 0.86961 0.85880 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.50 10.50 -19.72 -0.21 -3.71 16 3 C 0.06 0.64 6.69 -39.24 -0.26 0.38 16 4 C -0.10 -1.12 9.98 -39.46 -0.39 -1.52 16 5 C -0.16 -1.81 9.89 -39.40 -0.39 -2.20 16 6 C 0.19 2.27 6.66 -83.69 -0.56 1.71 16 7 N -0.74 -8.75 5.74 -59.76 -0.34 -9.09 16 8 C 0.18 2.16 5.03 -5.20 -0.03 2.14 16 9 C -0.20 -2.83 5.25 -104.59 -0.55 -3.38 16 10 C -0.05 -0.77 9.69 -39.61 -0.38 -1.15 16 11 C -0.22 -3.67 9.21 -39.38 -0.36 -4.03 16 12 C 0.25 4.79 6.55 -83.79 -0.55 4.24 16 13 N -0.61 -12.62 2.99 -181.00 -0.54 -13.17 16 14 C 0.10 1.66 10.23 59.85 0.61 2.27 16 15 C 0.25 6.05 4.95 -5.19 -0.03 6.03 16 16 C -0.53 -14.28 9.39 -34.44 -0.32 -14.60 16 17 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 20 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.19 -3.65 9.20 -39.38 -0.36 -4.01 16 25 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 26 C -0.16 -1.84 9.31 -39.40 -0.37 -2.20 16 27 C -0.16 -1.64 9.03 -39.46 -0.36 -2.00 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.40 4.78 8.48 -40.82 -0.35 4.43 16 34 H 0.06 0.66 7.88 -51.93 -0.41 0.25 16 35 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 36 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.12 1.70 6.14 -52.49 -0.32 1.37 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.77 6.20 -51.93 -0.32 0.45 16 40 H 0.06 1.02 7.89 -51.93 -0.41 0.61 16 41 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 42 H 0.04 0.93 6.21 -51.93 -0.32 0.61 16 43 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 44 H 0.13 2.86 6.15 -52.49 -0.32 2.54 16 45 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 46 H 0.12 1.23 6.73 -52.49 -0.35 0.88 16 47 H 0.12 1.02 6.29 -52.48 -0.33 0.69 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -29.24 387.11 -10.16 -39.40 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.84 Total: 5.98 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -3.79 Total: -16.79 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.15 Total: -46.76 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -0.21 Total: -3.71 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.24 -10.16 -39.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069830893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.941 kcal (2) G-P(sol) polarization free energy of solvation -29.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds