Wall clock time and date at job start Tue Mar 31 2020 14:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 117.00426 * 2 1 4 4 C 1.38697 * 119.98309 * 179.97438 * 3 2 1 5 5 C 1.38111 * 120.02260 * 180.02562 * 4 3 2 6 6 C 1.38863 * 119.97688 * 359.97438 * 5 4 3 7 7 N 1.39947 * 120.01744 * 180.02562 * 6 5 4 8 8 C 1.46494 * 119.99838 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47118 * 180.02562 * 8 7 6 10 10 C 1.38289 * 119.92661 * 89.99939 * 9 8 7 11 11 C 1.38100 * 120.07703 * 180.02562 * 10 9 8 12 12 C 1.38913 * 119.92613 * 359.97438 * 11 10 9 13 13 N 1.39673 * 120.07616 * 179.97438 * 12 11 10 14 14 C 1.46498 * 120.00285 * 0.02562 * 13 12 11 15 15 C 1.46506 * 119.99960 * 180.02562 * 13 12 11 16 16 C 1.50703 * 109.47289 * 89.99927 * 15 13 12 17 17 H 1.07994 * 119.99399 * 0.02562 * 16 15 13 18 18 C 1.37874 * 119.99789 * 179.97438 * 16 15 13 19 19 N 1.31518 * 120.00144 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99733 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46762 * 60.00562 * 20 18 16 22 22 H 1.48506 * 109.46725 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00217 * 20 18 16 24 24 C 1.38912 * 119.84952 * 0.25994 * 12 11 10 25 25 C 1.38107 * 119.92242 * 359.48694 * 24 12 11 26 26 C 1.38859 * 119.96318 * 0.27957 * 6 5 4 27 27 C 1.38108 * 119.97895 * 359.46065 * 26 6 5 28 28 H 1.08990 * 109.47205 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46633 * 299.99949 * 1 2 3 30 30 H 1.09002 * 109.46846 * 59.99378 * 1 2 3 31 31 H 1.07997 * 119.98948 * 0.02632 * 4 3 2 32 32 H 1.07997 * 120.01527 * 179.97438 * 5 4 3 33 33 H 0.97001 * 119.99865 * 0.02562 * 7 6 5 34 34 H 1.09001 * 109.47483 * 60.00117 * 8 7 6 35 35 H 1.09001 * 109.47554 * 299.99975 * 8 7 6 36 36 H 1.07999 * 119.95876 * 0.02562 * 10 9 8 37 37 H 1.07996 * 120.04085 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.46923 * 270.00426 * 14 13 12 39 39 H 1.08997 * 109.46694 * 29.99558 * 14 13 12 40 40 H 1.08995 * 109.47258 * 149.99834 * 14 13 12 41 41 H 1.09001 * 109.47060 * 210.00378 * 15 13 12 42 42 H 1.09004 * 109.47073 * 329.99866 * 15 13 12 43 43 H 0.96997 * 119.99752 * 179.97438 * 19 18 16 44 44 H 1.08000 * 120.03937 * 179.72354 * 24 12 11 45 45 H 1.08005 * 119.96225 * 180.25637 * 25 24 12 46 46 H 1.07999 * 120.00977 * 179.70640 * 26 6 5 47 47 H 1.08004 * 119.98819 * 180.25473 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0596 2.5138 0.0011 6 6 3.3037 3.6787 0.0005 7 7 3.9391 4.9256 0.0005 8 6 3.1413 6.1542 0.0005 9 6 4.0593 7.3493 -0.0001 10 6 4.4791 7.8961 -1.1989 11 6 5.3209 8.9910 -1.2031 12 6 5.7454 9.5434 -0.0013 13 7 6.5971 10.6504 -0.0019 14 6 7.0433 11.2306 -1.2709 15 6 7.0443 11.2312 1.2666 16 6 8.3237 10.5640 1.7014 17 1 8.7602 9.7855 1.0934 18 6 8.9373 10.9483 2.8747 19 7 8.4058 11.8967 3.6148 20 14 10.5228 10.1207 3.4140 21 1 11.5666 10.3286 2.3785 22 1 10.9760 10.7097 4.6997 23 1 10.2857 8.6658 3.5928 24 6 5.3257 8.9886 1.2011 25 6 4.4797 7.8970 1.1981 26 6 1.9170 3.6057 0.0053 27 6 1.2908 2.3747 -0.0006 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.0193 0.3777 0.0005 32 1 5.1381 2.5698 0.0019 33 1 4.9078 4.9763 0.0005 34 1 2.5125 6.1792 0.8905 35 1 2.5124 6.1792 -0.8894 36 1 4.1484 7.4664 -2.1329 37 1 5.6487 9.4173 -2.1396 38 1 7.9685 10.7478 -1.5858 39 1 6.2766 11.0768 -2.0302 40 1 7.2169 12.2988 -1.1409 41 1 7.2177 12.2994 1.1359 42 1 6.2780 11.0779 2.0265 43 1 8.8374 12.1668 4.4404 44 1 5.6575 9.4129 2.1372 45 1 4.1497 7.4677 2.1326 46 1 1.3284 4.5112 0.0097 47 1 0.2123 2.3178 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069830893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:18 Heat of formation + Delta-G solvation = 9.632320 kcal Electronic energy + Delta-G solvation = -25851.498865 eV Core-core repulsion = 22191.800833 eV Total energy + Delta-G solvation = -3659.698031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.95868 -40.47876 -38.88482 -37.52089 -35.59064 -34.68803 -31.94862 -31.93161 -31.76428 -29.72460 -29.31991 -27.83611 -26.98182 -25.86199 -24.20659 -23.15735 -22.98346 -22.24049 -21.06497 -19.02190 -18.66175 -18.34897 -17.84404 -17.03361 -16.92749 -16.47759 -16.32620 -15.96950 -15.66989 -15.37716 -15.32901 -15.03784 -14.67320 -14.40864 -14.24039 -14.17384 -14.08525 -13.98349 -13.52060 -13.26706 -13.19085 -13.13513 -13.04984 -12.69558 -12.64112 -12.54304 -12.26933 -12.07287 -11.99598 -11.80101 -11.57662 -11.44883 -10.65493 -10.48845 -10.35497 -9.87337 -9.71620 -8.38844 -7.94945 -7.86670 -6.38746 0.47003 0.66679 0.71925 0.77318 1.36274 1.37788 1.45991 2.32368 2.55003 2.59730 2.70495 2.98150 3.04810 3.22089 3.96204 3.98688 4.03586 4.06613 4.20618 4.36874 4.38637 4.47308 4.47945 4.48496 4.60302 4.63597 4.67039 4.70755 4.77297 4.80715 4.86032 4.92055 4.99208 5.07750 5.11721 5.17273 5.24671 5.29431 5.43742 5.52915 5.55844 5.61897 5.67479 5.79831 5.87142 6.05342 6.14602 6.45448 6.46989 6.66650 6.80047 6.89121 6.93827 7.32869 8.81462 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.017046 B = 0.002133 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.241272 B =13124.198703 C =14102.978063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.343 6.343 3 C 0.046 3.954 4 C -0.113 4.113 5 C -0.168 4.168 6 C 0.179 3.821 7 N -0.744 5.744 8 C 0.189 3.811 9 C -0.180 4.180 10 C -0.046 4.046 11 C -0.218 4.218 12 C 0.219 3.781 13 N -0.629 5.629 14 C 0.098 3.902 15 C 0.265 3.735 16 C -0.542 4.542 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.925 5.925 20 Si 0.960 3.040 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.274 1.274 24 C -0.218 4.218 25 C -0.054 4.054 26 C -0.170 4.170 27 C -0.158 4.158 28 H 0.114 0.886 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.400 0.600 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.040 0.960 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.011 0.989 42 H 0.012 0.988 43 H 0.267 0.733 44 H 0.096 0.904 45 H 0.123 0.877 46 H 0.136 0.864 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.448 -17.757 -10.516 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.258 6.258 3 C 0.000 4.000 4 C -0.133 4.133 5 C -0.190 4.190 6 C 0.076 3.924 7 N -0.375 5.375 8 C 0.066 3.934 9 C -0.183 4.183 10 C -0.065 4.065 11 C -0.241 4.241 12 C 0.113 3.887 13 N -0.336 5.336 14 C -0.045 4.045 15 C 0.143 3.857 16 C -0.581 4.581 17 H 0.067 0.933 18 C -0.187 4.187 19 N -0.565 5.565 20 Si 0.785 3.215 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.199 1.199 24 C -0.241 4.241 25 C -0.073 4.073 26 C -0.193 4.193 27 C -0.177 4.177 28 H 0.132 0.868 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.234 0.766 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.141 0.859 46 H 0.153 0.847 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.350 -17.467 -10.360 25.457 hybrid contribution 1.353 0.379 0.875 1.655 sum -13.997 -17.088 -9.485 24.039 Atomic orbital electron populations 1.23221 0.77219 1.05046 1.01804 1.86010 1.22783 1.27025 1.89990 1.18953 0.92526 0.84598 1.03907 1.20335 0.91726 0.98199 1.03000 1.20591 1.00070 0.90406 1.07968 1.17976 0.92245 0.85876 0.96310 1.44919 1.08376 1.01716 1.82461 1.19944 0.91672 0.80211 1.01611 1.19498 1.05497 1.00594 0.92702 1.20937 0.94162 0.93486 0.97958 1.20816 1.06055 1.01427 0.95811 1.18279 0.88728 0.87016 0.94633 1.47001 1.49034 1.30583 1.06981 1.21619 0.99437 0.98119 0.85316 1.18820 0.93447 0.92376 0.81039 1.21728 1.09039 1.20473 1.06819 0.93304 1.25770 1.00999 0.95600 0.96315 1.70023 1.41299 1.30380 1.14778 0.85577 0.79515 0.78707 0.77706 1.19403 1.20425 1.19884 1.20790 1.05214 1.01408 0.96674 1.20844 0.94556 0.93634 0.98294 1.20648 0.92516 0.98255 1.07902 1.21201 1.00585 0.91391 1.04550 0.86795 0.92276 0.92119 0.84775 0.84746 0.76581 0.91868 0.90751 0.83863 0.84779 0.94162 0.89580 0.91981 0.97129 0.96973 0.92384 0.88593 0.85891 0.84662 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -6.86 10.50 -93.49 -0.98 -7.84 16 3 C 0.05 0.98 6.69 22.49 0.15 1.13 16 4 C -0.11 -2.41 9.98 22.35 0.22 -2.19 16 5 C -0.17 -3.53 9.89 22.39 0.22 -3.31 16 6 C 0.18 3.85 6.66 38.14 0.25 4.10 16 7 N -0.74 -15.71 5.74 -342.99 -1.97 -17.68 16 8 C 0.19 3.85 5.03 85.63 0.43 4.28 16 9 C -0.18 -4.68 5.25 -19.84 -0.10 -4.78 16 10 C -0.05 -1.19 9.69 22.25 0.22 -0.97 16 11 C -0.22 -6.70 9.21 22.40 0.21 -6.50 16 12 C 0.22 8.53 6.55 38.22 0.25 8.78 16 13 N -0.63 -26.70 2.99 -726.55 -2.17 -28.87 16 14 C 0.10 3.28 10.23 127.77 1.31 4.59 16 15 C 0.26 13.68 4.95 85.63 0.42 14.10 16 16 C -0.54 -30.14 9.39 25.60 0.24 -29.90 16 17 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 18 C 0.01 0.70 5.46 84.65 0.46 1.16 16 19 N -0.93 -53.92 13.29 21.45 0.28 -53.63 16 20 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 24 C -0.22 -8.73 9.20 22.40 0.21 -8.52 16 25 C -0.05 -1.72 9.69 22.25 0.22 -1.50 16 26 C -0.17 -3.37 9.31 22.39 0.21 -3.16 16 27 C -0.16 -2.97 9.03 22.35 0.20 -2.77 16 28 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 30 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 31 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 33 H 0.40 8.68 8.48 -92.71 -0.79 7.90 16 34 H 0.06 1.25 7.88 -2.39 -0.02 1.23 16 35 H 0.07 1.30 7.90 -2.39 -0.02 1.29 16 36 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 37 H 0.13 3.55 6.14 -2.91 -0.02 3.53 16 38 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 2.28 6.20 -2.39 -0.01 2.27 16 40 H 0.06 2.04 7.89 -2.39 -0.02 2.02 16 41 H 0.01 0.58 7.89 -2.39 -0.02 0.56 16 42 H 0.01 0.68 6.21 -2.38 -0.01 0.67 16 43 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.10 4.50 6.15 -2.91 -0.02 4.48 16 45 H 0.12 3.55 8.06 -2.91 -0.02 3.52 16 46 H 0.14 2.26 6.73 -2.91 -0.02 2.24 16 47 H 0.14 1.97 6.29 -2.91 -0.02 1.96 16 Total: -1.00 -65.03 387.11 3.61 -61.42 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.19 Total: 24.79 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 6.23 Total: -24.08 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -3.86 Total: -100.19 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.98 Total: -7.84 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -65.03 3.61 -61.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069830893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.056 kcal (2) G-P(sol) polarization free energy of solvation -65.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds